The Experts below are selected from a list of 39 Experts worldwide ranked by ideXlab platform

Kai F Muller - One of the best experts on this subject based on the ideXlab platform.

  • jphyloio a java library for event based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. We developed the Java library JPhyloIO, which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO-based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL. Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO’s features in their own software. JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML.

  • JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Background Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. Results We developed the Java library JPhyloIO , which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO -based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL . Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO ’s features in their own software. Conclusion JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML .

Ben C Stover - One of the best experts on this subject based on the ideXlab platform.

  • jphyloio a java library for event based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. We developed the Java library JPhyloIO, which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO-based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL. Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO’s features in their own software. JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML.

  • JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Background Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. Results We developed the Java library JPhyloIO , which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO -based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL . Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO ’s features in their own software. Conclusion JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML .

Sarah Wiechers - One of the best experts on this subject based on the ideXlab platform.

  • jphyloio a java library for event based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. We developed the Java library JPhyloIO, which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO-based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL. Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO’s features in their own software. JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML.

  • JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface
    BMC Bioinformatics, 2019
    Co-Authors: Ben C Stover, Sarah Wiechers, Kai F Muller
    Abstract:

    Background Today a variety of phylogenetic file formats exists, some of which are well-established but limited in their Data model, while other more recently introduced ones offer advanced features for metaData representation. Although most currently available software only supports the classical formats with a limited metaData model, it would be desirable to have support for the more advanced formats. This is necessary for users to produce richly annotated Data that can be efficiently reused and make underlying workflows easily reproducible. A programming library that abstracts over the Data and metaData models of the different formats and allows supporting all of them in one step would significantly simplify the development of new and the extension of existing software to address the need for better metaData annotation. Results We developed the Java library JPhyloIO , which allows event-based reading and writing of the most common alignment and tree/network formats. It allows full access to all features of the nine currently supported formats. By implementing a single JPhyloIO -based reader and writer, Application developers can support all of these formats. Due to the event-based architecture, JPhyloIO can be combined with any Application Data Structure, and is memory efficient for large Datasets. JPhyloIO is distributed under LGPL . Detailed documentation and example Applications (available on http://bioinfweb.info/JPhyloIO/ ) significantly lower the entry barrier for bioinformaticians who wish to benefit from JPhyloIO ’s features in their own software. Conclusion JPhyloIO enables simplified development of new and extension of existing Applications that support various standard formats simultaneously. This has the potential to improve interoperability between phylogenetic software tools and at the same time motivate usage of more recent metaData-rich formats such as NeXML or phyloXML .

Fenni Agustina - One of the best experts on this subject based on the ideXlab platform.

  • INTERACTIVE LEARNING Application Data Structure USING MACROMEDIA AUTHOWARE 6.5
    2011
    Co-Authors: Andrian F.n, Fenni Agustina
    Abstract:

    Learning Application Data Interakif Structure is a software which is made by using multimedia Applications. The making of this Application includes several elements such as pictures, sound, animation, video and sounds that will be processed and merged with Authorware 6.5. Learning Applications Interakif This Data Structure is useful for users, other than it looks interesting also easier in use. The objective is to build an interactive CD which is expected to provide facilities for students, especially in the present information, ideas and concepts for the purposes of learning.

Andrian F.n - One of the best experts on this subject based on the ideXlab platform.

  • INTERACTIVE LEARNING Application Data Structure USING MACROMEDIA AUTHOWARE 6.5
    2011
    Co-Authors: Andrian F.n, Fenni Agustina
    Abstract:

    Learning Application Data Interakif Structure is a software which is made by using multimedia Applications. The making of this Application includes several elements such as pictures, sound, animation, video and sounds that will be processed and merged with Authorware 6.5. Learning Applications Interakif This Data Structure is useful for users, other than it looks interesting also easier in use. The objective is to build an interactive CD which is expected to provide facilities for students, especially in the present information, ideas and concepts for the purposes of learning.