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Alexander S. Graphodatsky - One of the best experts on this subject based on the ideXlab platform.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).
PLOS ONE, 2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae–monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table 1
2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table
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Comparative chromosome painting in Carnivora and Pholidota.
Cytogenetic and genome research, 2012Co-Authors: Polina L Perelman, Violetta R Beklemisheva, Dmitry V. Yudkin, T.n. Petrina, V.v. Rozhnov, Wenhui Nie, Alexander S. GraphodatskyAbstract:The order of Carnivora has been very well characterized with over 50 species analyzed by chromosome painting and with painting probe sets made for 9 Carnivora species. Representatives of almost all families have been studied with few exceptions (Otariidae, Odobenidae, Nandiniidae, Prionodontidae). The patterns of chromosome evolution in Carnivora are discussed here. Overall, many Carnivora species retained karyotypes that only slightly differ from the ancestral carnivore karyotype. However, there are at least 3 families in which the ancestral carnivore karyotype has been severely rearranged – Canidae, Ursidae and Mephitidae. Here we report chromosome painting of yet another Carnivora species with a highly rearranged karyotype, Genetta pardina. Recurrent rearrangements make it difficult to define the ancestral chromosomal arrangement in several instances. Only 2 species of pangolins (Pholidota), a sister order of Carnivora, have been studied by chromosome painting. Future use of whole-genome sequencing data is discussed in the context of solving the questions that are beyond resolution of conventional banding techniques and chromosome painting.
Francisco J. Prevosti - One of the best experts on this subject based on the ideXlab platform.
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Evolution of the Carnassial in Living Mammalian Carnivores (Carnivora, Didelphimorphia, Dasyuromorphia): Diet, Phylogeny, and Allometry
Journal of Mammalian Evolution, 2020Co-Authors: Sergio D. Tarquini, M. Amelia Chemisquy, Francisco J. PrevostiAbstract:Different living mammals have developed a carnivorous habit (e.g., Carnivora, Dasyuridae, Thylacinidae, some Didelphidae). They exhibit different specializations for Carnivory; however, they share some characters such as a carnassial molar. Previous studies have correlated the shape of molars with diet using morphometric indices or surface scans. In this work, we used 3D geometric morphometrics to explore the shape of the lower carnassials of 235 specimens corresponding to 71 extant species of Carnivora and six extant species of Marsupialia, both Didelphimorphia and Dasyuromorphia. We statistically estimated the effect of size, diet, and phylogeny on molar shape. All the analyses indicated a higher correlation between diet and molar shape, and a better correlation between molar shape and the position of each species on the phylogeny. Therefore, if we take into account the phylogenetic pattern, we can use molar morphology to infer diet of fossil species. Finally, this work evaluates for the first time, in a quantitative way, which of the lower molars of the Metatheria (m3 or m4) is the best analogue to the m1 of Carnivora; our results indicated the m4 is the best analogue.
Violetta R Beklemisheva - One of the best experts on this subject based on the ideXlab platform.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).
PLOS ONE, 2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae–monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table 1
2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table
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Comparative chromosome painting in Carnivora and Pholidota.
Cytogenetic and genome research, 2012Co-Authors: Polina L Perelman, Violetta R Beklemisheva, Dmitry V. Yudkin, T.n. Petrina, V.v. Rozhnov, Wenhui Nie, Alexander S. GraphodatskyAbstract:The order of Carnivora has been very well characterized with over 50 species analyzed by chromosome painting and with painting probe sets made for 9 Carnivora species. Representatives of almost all families have been studied with few exceptions (Otariidae, Odobenidae, Nandiniidae, Prionodontidae). The patterns of chromosome evolution in Carnivora are discussed here. Overall, many Carnivora species retained karyotypes that only slightly differ from the ancestral carnivore karyotype. However, there are at least 3 families in which the ancestral carnivore karyotype has been severely rearranged – Canidae, Ursidae and Mephitidae. Here we report chromosome painting of yet another Carnivora species with a highly rearranged karyotype, Genetta pardina. Recurrent rearrangements make it difficult to define the ancestral chromosomal arrangement in several instances. Only 2 species of pangolins (Pholidota), a sister order of Carnivora, have been studied by chromosome painting. Future use of whole-genome sequencing data is discussed in the context of solving the questions that are beyond resolution of conventional banding techniques and chromosome painting.
Sergio D. Tarquini - One of the best experts on this subject based on the ideXlab platform.
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Evolution of the Carnassial in Living Mammalian Carnivores (Carnivora, Didelphimorphia, Dasyuromorphia): Diet, Phylogeny, and Allometry
Journal of Mammalian Evolution, 2020Co-Authors: Sergio D. Tarquini, M. Amelia Chemisquy, Francisco J. PrevostiAbstract:Different living mammals have developed a carnivorous habit (e.g., Carnivora, Dasyuridae, Thylacinidae, some Didelphidae). They exhibit different specializations for Carnivory; however, they share some characters such as a carnassial molar. Previous studies have correlated the shape of molars with diet using morphometric indices or surface scans. In this work, we used 3D geometric morphometrics to explore the shape of the lower carnassials of 235 specimens corresponding to 71 extant species of Carnivora and six extant species of Marsupialia, both Didelphimorphia and Dasyuromorphia. We statistically estimated the effect of size, diet, and phylogeny on molar shape. All the analyses indicated a higher correlation between diet and molar shape, and a better correlation between molar shape and the position of each species on the phylogeny. Therefore, if we take into account the phylogenetic pattern, we can use molar morphology to infer diet of fossil species. Finally, this work evaluates for the first time, in a quantitative way, which of the lower molars of the Metatheria (m3 or m4) is the best analogue to the m1 of Carnivora; our results indicated the m4 is the best analogue.
Polina L Perelman - One of the best experts on this subject based on the ideXlab platform.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora).
PLOS ONE, 2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:Karyotype evolution in Carnivora is thoroughly studied by classical and molecular cytogenetics and supplemented by reconstructions of Ancestral Carnivora Karyotype (ACK). However chromosome painting information from two pinniped families (Odobenidae and Otariidae) is noticeably missing. We report on the construction of the comparative chromosome map for species from each of the three pinniped families: the walrus (Odobenus rosmarus, Odobenidae–monotypic family), near threatened Steller sea lion (Eumetopias jubatus, Otariidae) and the endemic Baikal seal (Pusa sibirica, Phocidae) using combination of human, domestic dog and stone marten whole-chromosome painting probes. The earliest karyological studies of Pinnipedia showed that pinnipeds were characterized by a pronounced karyological conservatism that is confirmed here with species from Phocidae, Otariidae and Odobenidae sharing same low number of conserved human autosomal segments (32). Chromosome painting in Pinnipedia and comparison with non-pinniped carnivore karyotypes provide strong support for refined structure of ACK with 2n = 38. Constructed comparative chromosome maps show that pinniped karyotype evolution was characterized by few tandem fusions, seemingly absent inversions and slow rate of genome rearrangements (less then one rearrangement per 10 million years). Integrative comparative analyses with published chromosome painting of Phoca vitulina revealed common cytogenetic signature for Phoca/Pusa branch and supports Phocidae and Otaroidea (Otariidae/Odobenidae) as sister groups. We revealed rearrangements specific for walrus karyotype and found the chromosomal signature linking together families Otariidae and Odobenidae. The Steller sea lion karyotype is the most conserved among three studied species and differs from the ACK by single fusion. The study underlined the strikingly slow karyotype evolution of the Pinnipedia in general and the Otariidae in particular.
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The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table 1
2016Co-Authors: Violetta R Beklemisheva, Vladimir N Burkanov, Natalia A. Lemskaya, Anastasia I. Kulemzina, Polina L Perelman, Anastasia A. Proskuryakova, Alexander S. GraphodatskyAbstract:The Ancestral Carnivore Karyotype As Substantiated by Comparative Chromosome Painting of Three Pinnipeds, the Walrus, the Steller Sea Lion and the Baikal Seal (Pinnipedia, Carnivora) - Table
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Comparative chromosome painting in Carnivora and Pholidota.
Cytogenetic and genome research, 2012Co-Authors: Polina L Perelman, Violetta R Beklemisheva, Dmitry V. Yudkin, T.n. Petrina, V.v. Rozhnov, Wenhui Nie, Alexander S. GraphodatskyAbstract:The order of Carnivora has been very well characterized with over 50 species analyzed by chromosome painting and with painting probe sets made for 9 Carnivora species. Representatives of almost all families have been studied with few exceptions (Otariidae, Odobenidae, Nandiniidae, Prionodontidae). The patterns of chromosome evolution in Carnivora are discussed here. Overall, many Carnivora species retained karyotypes that only slightly differ from the ancestral carnivore karyotype. However, there are at least 3 families in which the ancestral carnivore karyotype has been severely rearranged – Canidae, Ursidae and Mephitidae. Here we report chromosome painting of yet another Carnivora species with a highly rearranged karyotype, Genetta pardina. Recurrent rearrangements make it difficult to define the ancestral chromosomal arrangement in several instances. Only 2 species of pangolins (Pholidota), a sister order of Carnivora, have been studied by chromosome painting. Future use of whole-genome sequencing data is discussed in the context of solving the questions that are beyond resolution of conventional banding techniques and chromosome painting.
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The Ancestral Carnivore Karyotype (2n 5 38) Lives Today in Ringtails
2008Co-Authors: William G. Nash, Joan C. Menninger, Hesed Padilla-nash, Gary Stone, Polina L PerelmanAbstract:Chromosome painting was used to investigate the conservation of high-resolution longitudinal 4#,6-diamidino-2-phenylindole (DAPI)/G bands in Carnivore chromosomes. Cat (Felis catus) and raccoon dog (Nyctereutes procyonoides) painting probes were hybridized to the ringtail (Bassaricus astutus), dwarf mongoose (Helogale parvula), and Malagasy civet (Fossa fossa) to identify homologous chromosome elements. The patterns of chromosome segment homology among Carnivore species allowed us to reconstruct and propose the disposition of a high-resolution banded ancestral carnivore karyotype (ACK). Three bi-armed chromosomes consistently found among Caniformia species are represented as 6 homologous acrocentric chromosomes among Feliformia species of Carnivora. However, reexamination of the most basal of Feliformia species, the African palm civet Nandinia, revealed the presence of the 3 heretofore Caniformia bi-armed chromosomes. Because these 3 bi-armed chromosomes are found in both Caniformia and Feliformia lineages, they are presumed ancestral for all Carnivora, suggesting that the ACK chromosome number would be 38, rather than the previously supposed 42. Banded chromosomes of the ACK are used to evaluate the consistency between recently determined molecular phylogenetic relationships and postulated cytogenetic dynamics in the same Carnivore species