The Experts below are selected from a list of 120 Experts worldwide ranked by ideXlab platform

Svetlana Sheremetyeva - One of the best experts on this subject based on the ideXlab platform.

  • CICLing (1) - Universal Computational Formalisms and Developer Environment for Rule-Based NLP
    Computational Linguistics and Intelligent Text Processing, 2018
    Co-Authors: Svetlana Sheremetyeva
    Abstract:

    The paper explores the issues of universal computational formalisms and reusable Developer Environment as applied to rule-based NLP. It suggests a portable grammar framework and modular NLP architecture that by combining certain modules can be reused for different unilingual and multilingual applications through a universal Developer Environment. The Developer Environment includes a lexicon shell with flexible settings to define, among others, tag descriptions, entry structures, depth of knowledge, and a number of compilers with universal rule-writing formalisms. The formalisms and compilers described have been successfully used (in different combinations and with different depth of analysis) in a number of unilingual and multilingual applications that involved English, Danish, French and Russian.

  • universal computational formalisms and Developer Environment for rule based nlp
    International Conference on Computational Linguistics, 2017
    Co-Authors: Svetlana Sheremetyeva
    Abstract:

    The paper explores the issues of universal computational formalisms and reusable Developer Environment as applied to rule-based NLP. It suggests a portable grammar framework and modular NLP architecture that by combining certain modules can be reused for different unilingual and multilingual applications through a universal Developer Environment. The Developer Environment includes a lexicon shell with flexible settings to define, among others, tag descriptions, entry structures, depth of knowledge, and a number of compilers with universal rule-writing formalisms. The formalisms and compilers described have been successfully used (in different combinations and with different depth of analysis) in a number of unilingual and multilingual applications that involved English, Danish, French and Russian.

Michael Primig - One of the best experts on this subject based on the ideXlab platform.

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    Background The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. Description AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii . A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae . Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae . Conclusion AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/ .

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    BACKGROUND: The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae. CONCLUSION: AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.

Alexandre Gattiker - One of the best experts on this subject based on the ideXlab platform.

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    Background The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. Description AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii . A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae . Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae . Conclusion AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/ .

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    BACKGROUND: The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae. CONCLUSION: AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.

Riccarda Rischatsch - One of the best experts on this subject based on the ideXlab platform.

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    Background The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. Description AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii . A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae . Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae . Conclusion AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/ .

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    BACKGROUND: The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae. CONCLUSION: AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.

Philippe Demougin - One of the best experts on this subject based on the ideXlab platform.

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    Background The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. Description AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii . A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae . Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae . Conclusion AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/ .

  • Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
    BMC Genomics, 2007
    Co-Authors: Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig
    Abstract:

    BACKGROUND: The Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl Developer Environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae. CONCLUSION: AGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.