The Experts below are selected from a list of 2310 Experts worldwide ranked by ideXlab platform
Ghatwary Noha - One of the best experts on this subject based on the ideXlab platform.
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Automatic Esophageal Abnormality Detection and Classification
2020Co-Authors: Ghatwary NohaAbstract:Esophageal cancer is counted as one of the deadliest cancers worldwide ranking the sixth among all types of cancers. Early esophageal cancer typically causes no symp- toms and mainly arises from overlooked/untreated premalignant abnormalities in the Esophagus Tube. Endoscopy is the main tool used for the detection of abnormalities, and the cell deformation stage is confirmed by taking biopsy samples. The process of detection and classification is considered challenging for several reasons such as; different types of abnormalities (including early cancer stages) can be located ran- domly throughout the Esophagus Tube, abnormal regions can have various sizes and appearances which makes it difficult to capture, and failure in discriminating between the columnar mucosa from the metaplastic epithelium. Although many studies have been conducted, it remains a challenging task and improving the accuracy of auto- matically classifying and detecting different esophageal abnormalities is an ongoing field. This thesis aims to develop novel automated methods for the detection and classification of the abnormal esophageal regions (precancerous and cancerous) from endoscopic images and videos. In this thesis, firstly, the abnormality stage of the esophageal cell deformation is clas- sified from confocal laser endomicroscopy (CLE) images. The CLE is an endoscopic tool that provides a digital pathology view of the Esophagus cells. The classifica- tion is achieved by enhancing the internal features of the CLE image, using a novel enhancement filter that utilizes fractional integration and differentiation. Different imaging features including, Multi-Scale pyramid rotation LBP (MP-RLBP), gray level co-occurrence matrices (GLCM), fractal analysis, fuzzy LBP and maximally stable extremal regions (MSER), are calculated from the enhanced image to assure a robust classification result. The support vector machine (SVM) and random forest (RF) classifiers are employed to classify each image into its pathology stage. Secondly, we propose an automatic detection method to locate abnormality regions from high definition white light (HD-WLE) endoscopic images. We first investigate the performance of different deep learning detection methods on our dataset. Then we propose an approach that combines hand-designed Gabor features with extracted convolutional neural network features that are used by the Faster R-CNN to detect abnormal regions. Moreover, to further improve the detection performance, we pro- pose a novel two-input network named GFD-Faster RCNN. The proposed method generates a Gabor fractal image from the original endoscopic image using Gabor filters. Then features are learned separately from the endoscopic image and the gen- erated Gabor fractal image using the densely connected convolutional network to detect abnormal esophageal regions. Thirdly, we present a novel model to detect the abnormal regions from endoscopic videos. We design a 3D Sequential DenseConvLstm network to extract spatiotem- poral features from the input videos that are utilized by a region proposal network and ROI pooling layer to detect abnormality regions in each frame throughout the video. Additionally, we suggest an FS-CRF post-processing method that incorpor- ates the Conditional Random Field (CRF) on a frame-based level to recover missed abnormal regions in neighborhood frames within the same clip. The methods are evaluated on four datasets: (1) CLE dataset used for the classific- ation model, (2) Publicly available dataset named Kvasir, (3) MICCAI’15 Endovis challenge dataset, Both datasets (2) and (3) are used for the evaluation of detection model from endoscopic images. Finally, (4) Gastrointestinal Atlas dataset used for the evaluation of the video detection model. The experimental results demonstrate promising results of the different models and have outperformed the state-of-the-art methods
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GFD Faster R-CNN: Gabor Fractal DenseNet Faster R-CNN for automatic detection of esophageal abnormalities in endoscopic images
'Springer Science and Business Media LLC', 2019Co-Authors: Ghatwary Noha, Zolgharni Massoud, Ye XujiongAbstract:Esophageal cancer is ranked as the sixth most fatal cancer type. Most esophageal cancers are believed to arise from overlooked abnormalities in the Esophagus Tube. The early detection of these abnormalities is considered challenging due to their different appearance and random location throughout the Esophagus Tube. In this paper, a novel Gabor Fractal DenseNet Faster R-CNN (GFD Faster R-CNN) is proposed which is a two-input network adapted from the Faster R-CNN to address the challenges of esophageal abnormality detection. First, a Gabor Fractal (GF) image is generated using various Gabor filter responses considering different orientations and scales, obtained from the original endoscopic image that strengthens the fractal texture information within the image. Secondly, we incorporate Densely Connected Convolutional Network (DenseNet) as the backbone network to extract features from both original endoscopic image and the generated GF image separately; the DenseNet provides a reduction in the trained parameters while supporting the network accuracy and enables a maximum flow of information. Features extracted from the GF and endoscopic images are fused through bilinear fusion before ROI pooling stage in Faster R-CNN, providing a rich feature representation that boosts the performance of final detection. The proposed architecture was trained and tested on two different datasets independently: Kvasir (1000 images) and MICCAI’15 (100 images). Extensive experiments have been carried out to evaluate the performance of the model, with a recall of 0.927 and precision of 0.942 for Kvasir dataset, and a recall of 0.97 and precision of 0.92 for MICCAI’15 dataset, demonstrating a high detection performance compared to the state-of-the-art
L I Hepin - One of the best experts on this subject based on the ideXlab platform.
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intermittent oro esophageal Tube feeding for parkinson s disease with swallowing disorder
Parenteral & Enteral Nutrition, 2014Co-Authors: L I HepinAbstract:Objective: To study the clinical curative effect of intermittent oro-esophageal Tube feeding for Parkinson's disease( PD) with swallowing disorder. Methods: 50 patients with swallowing disorder caused by PD were divided into the treatment group and control group. The nutritional status and swallowing disorders were observed. Results: The clinical nutritional status was improved after treatment. The swallowing disorders were alse improved in treatment group. Conclusion: The intermitent oro-Esophagus Tube feeding can improve the nutritional status and promote the functional recovery of swallowing disorders in PD.
Ye Xujiong - One of the best experts on this subject based on the ideXlab platform.
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GFD Faster R-CNN: Gabor Fractal DenseNet Faster R-CNN for automatic detection of esophageal abnormalities in endoscopic images
'Springer Science and Business Media LLC', 2019Co-Authors: Ghatwary Noha, Zolgharni Massoud, Ye XujiongAbstract:Esophageal cancer is ranked as the sixth most fatal cancer type. Most esophageal cancers are believed to arise from overlooked abnormalities in the Esophagus Tube. The early detection of these abnormalities is considered challenging due to their different appearance and random location throughout the Esophagus Tube. In this paper, a novel Gabor Fractal DenseNet Faster R-CNN (GFD Faster R-CNN) is proposed which is a two-input network adapted from the Faster R-CNN to address the challenges of esophageal abnormality detection. First, a Gabor Fractal (GF) image is generated using various Gabor filter responses considering different orientations and scales, obtained from the original endoscopic image that strengthens the fractal texture information within the image. Secondly, we incorporate Densely Connected Convolutional Network (DenseNet) as the backbone network to extract features from both original endoscopic image and the generated GF image separately; the DenseNet provides a reduction in the trained parameters while supporting the network accuracy and enables a maximum flow of information. Features extracted from the GF and endoscopic images are fused through bilinear fusion before ROI pooling stage in Faster R-CNN, providing a rich feature representation that boosts the performance of final detection. The proposed architecture was trained and tested on two different datasets independently: Kvasir (1000 images) and MICCAI’15 (100 images). Extensive experiments have been carried out to evaluate the performance of the model, with a recall of 0.927 and precision of 0.942 for Kvasir dataset, and a recall of 0.97 and precision of 0.92 for MICCAI’15 dataset, demonstrating a high detection performance compared to the state-of-the-art
Hamid A Jalab - One of the best experts on this subject based on the ideXlab platform.
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automatic grade classification of barretts Esophagus through feature enhancement
Proceedings of SPIE, 2017Co-Authors: Noha Ghatwary, Amr Ahmed, Hamid A JalabAbstract:Barretts Esophagus (BE) is a precancerous condition that affects the Esophagus Tube and has the risk of develop- ing esophageal adenocarcinoma. BE is the process of developing metaplastic intestinal epithelium and replacing the normal cells in the esophageal area. The detection of BE is considered difficult due to its appearance and properties. The diagnosis is usually done through both endoscopy and biopsy. Recently, Computer Aided Diag- nosis systems have been developed to support physicians opinion when facing difficulty in detection/classification in different types of diseases. In this paper, an automatic classification of Barretts Esophagus condition is intro- duced. The presented method enhances the internal features of a Confocal Laser Endomicroscopy (CLE) image by utilizing a proposed enhancement filter. This filter depends on fractional differentiation and integration that improve the features in the discrete wavelet transform of an image. Later on, various features are extracted from each enhanced image on different levels for the multi-classification process. Our approach is validated on a dataset that consists of a group of 32 patients with 262 images with different histology grades. The experimental results demonstrated the efficiency of the proposed technique. Our method helps clinicians for more accurate classification. This potentially helps to reduce the need for biopsies needed for diagnosis, facilitate the regular monitoring of treatment/development of the patients case and can help train doctors with the new endoscopy technology. The accurate automatic classification is particularly important for the Intestinal Metaplasia (IM) type, which could turn into deadly cancerous. Hence, this work contributes to automatic classification that facilitates early intervention/treatment and decreasing biopsy samples needed.
Noha Ghatwary - One of the best experts on this subject based on the ideXlab platform.
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automatic grade classification of barretts Esophagus through feature enhancement
Proceedings of SPIE, 2017Co-Authors: Noha Ghatwary, Amr Ahmed, Hamid A JalabAbstract:Barretts Esophagus (BE) is a precancerous condition that affects the Esophagus Tube and has the risk of develop- ing esophageal adenocarcinoma. BE is the process of developing metaplastic intestinal epithelium and replacing the normal cells in the esophageal area. The detection of BE is considered difficult due to its appearance and properties. The diagnosis is usually done through both endoscopy and biopsy. Recently, Computer Aided Diag- nosis systems have been developed to support physicians opinion when facing difficulty in detection/classification in different types of diseases. In this paper, an automatic classification of Barretts Esophagus condition is intro- duced. The presented method enhances the internal features of a Confocal Laser Endomicroscopy (CLE) image by utilizing a proposed enhancement filter. This filter depends on fractional differentiation and integration that improve the features in the discrete wavelet transform of an image. Later on, various features are extracted from each enhanced image on different levels for the multi-classification process. Our approach is validated on a dataset that consists of a group of 32 patients with 262 images with different histology grades. The experimental results demonstrated the efficiency of the proposed technique. Our method helps clinicians for more accurate classification. This potentially helps to reduce the need for biopsies needed for diagnosis, facilitate the regular monitoring of treatment/development of the patients case and can help train doctors with the new endoscopy technology. The accurate automatic classification is particularly important for the Intestinal Metaplasia (IM) type, which could turn into deadly cancerous. Hence, this work contributes to automatic classification that facilitates early intervention/treatment and decreasing biopsy samples needed.