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John F. Hunt - One of the best experts on this subject based on the ideXlab platform.

  • Structural characterization of an MJ1267 ATP-binding cassette crystal with a complex pattern of twinning caused by promiscuous fiber packing.
    Acta Crystallographica Section D Biological Crystallography, 2003
    Co-Authors: Yu‐ren Yuan, Oskana Martsinkevich, John F. Hunt
    Abstract:

    ATP-binding cassettes represent the motor domains in ABC transporters, a superfamily of integral membrane-protein pumps that couple the hydrolysis of ATP to transmembrane solute translocation. A crystal of a Mg-ADP complex of the MJ1267 ATP-binding cassette was obtained that produced a diffraction pattern characterized by pathological streaking of the spots in the a* x b* plane. While the Laue symmetry of the diffraction pattern was P3;1m, the crystal was determined to be twinned based on intensity statistics, molecular-replacement analysis and difference Fourier analysis of an engineered single-site Methylmercury Derivative. The unit cell contains three similar 3(1) fibers, with two of them related by primarily translational non-crystallographic symmetry (NCS) and the third related to the first two by approximate twofold screw operations whose rotational components are very similar to the twinning operator. The promiscuous packing of these 3(1) fibers, which make both parallel and antiparallel interactions in the primary crystal lattice, can explain the twinning tendency based on the ability of the twin-related lattices to interact with one another while making only one slightly sub-optimal intermolecular contact per unit cell in the boundary region. The promiscuous fiber packing can also explain the streaking in the diffraction pattern based on the ability to form a variety of different lattices with similar inter-fiber packing interactions. The crystal structure was refined as a twin in space group P3(1) using the program CNS, yielding a free R factor of 28.9% at 2.6 A and a refined twin fraction of 0.50. The structure shows a rigid-body rotation of the ABC-transporter-specific alpha-helical subdomain (ABCalpha subdomain) in MJ1267 compared with the conformation observed for the same protein in a C2 crystal lattice; this observation suggests that the ABCalpha subdomain is flexibly attached to the F1-type ATP-binding core of the ATP-binding cassette when Mg-ADP is bound at the active site.

Yu‐ren Yuan - One of the best experts on this subject based on the ideXlab platform.

  • Structural characterization of an MJ1267 ATP-binding cassette crystal with a complex pattern of twinning caused by promiscuous fiber packing.
    Acta Crystallographica Section D Biological Crystallography, 2003
    Co-Authors: Yu‐ren Yuan, Oskana Martsinkevich, John F. Hunt
    Abstract:

    ATP-binding cassettes represent the motor domains in ABC transporters, a superfamily of integral membrane-protein pumps that couple the hydrolysis of ATP to transmembrane solute translocation. A crystal of a Mg-ADP complex of the MJ1267 ATP-binding cassette was obtained that produced a diffraction pattern characterized by pathological streaking of the spots in the a* x b* plane. While the Laue symmetry of the diffraction pattern was P3;1m, the crystal was determined to be twinned based on intensity statistics, molecular-replacement analysis and difference Fourier analysis of an engineered single-site Methylmercury Derivative. The unit cell contains three similar 3(1) fibers, with two of them related by primarily translational non-crystallographic symmetry (NCS) and the third related to the first two by approximate twofold screw operations whose rotational components are very similar to the twinning operator. The promiscuous packing of these 3(1) fibers, which make both parallel and antiparallel interactions in the primary crystal lattice, can explain the twinning tendency based on the ability of the twin-related lattices to interact with one another while making only one slightly sub-optimal intermolecular contact per unit cell in the boundary region. The promiscuous fiber packing can also explain the streaking in the diffraction pattern based on the ability to form a variety of different lattices with similar inter-fiber packing interactions. The crystal structure was refined as a twin in space group P3(1) using the program CNS, yielding a free R factor of 28.9% at 2.6 A and a refined twin fraction of 0.50. The structure shows a rigid-body rotation of the ABC-transporter-specific alpha-helical subdomain (ABCalpha subdomain) in MJ1267 compared with the conformation observed for the same protein in a C2 crystal lattice; this observation suggests that the ABCalpha subdomain is flexibly attached to the F1-type ATP-binding core of the ATP-binding cassette when Mg-ADP is bound at the active site.

Oskana Martsinkevich - One of the best experts on this subject based on the ideXlab platform.

  • Structural characterization of an MJ1267 ATP-binding cassette crystal with a complex pattern of twinning caused by promiscuous fiber packing.
    Acta Crystallographica Section D Biological Crystallography, 2003
    Co-Authors: Yu‐ren Yuan, Oskana Martsinkevich, John F. Hunt
    Abstract:

    ATP-binding cassettes represent the motor domains in ABC transporters, a superfamily of integral membrane-protein pumps that couple the hydrolysis of ATP to transmembrane solute translocation. A crystal of a Mg-ADP complex of the MJ1267 ATP-binding cassette was obtained that produced a diffraction pattern characterized by pathological streaking of the spots in the a* x b* plane. While the Laue symmetry of the diffraction pattern was P3;1m, the crystal was determined to be twinned based on intensity statistics, molecular-replacement analysis and difference Fourier analysis of an engineered single-site Methylmercury Derivative. The unit cell contains three similar 3(1) fibers, with two of them related by primarily translational non-crystallographic symmetry (NCS) and the third related to the first two by approximate twofold screw operations whose rotational components are very similar to the twinning operator. The promiscuous packing of these 3(1) fibers, which make both parallel and antiparallel interactions in the primary crystal lattice, can explain the twinning tendency based on the ability of the twin-related lattices to interact with one another while making only one slightly sub-optimal intermolecular contact per unit cell in the boundary region. The promiscuous fiber packing can also explain the streaking in the diffraction pattern based on the ability to form a variety of different lattices with similar inter-fiber packing interactions. The crystal structure was refined as a twin in space group P3(1) using the program CNS, yielding a free R factor of 28.9% at 2.6 A and a refined twin fraction of 0.50. The structure shows a rigid-body rotation of the ABC-transporter-specific alpha-helical subdomain (ABCalpha subdomain) in MJ1267 compared with the conformation observed for the same protein in a C2 crystal lattice; this observation suggests that the ABCalpha subdomain is flexibly attached to the F1-type ATP-binding core of the ATP-binding cassette when Mg-ADP is bound at the active site.

Deng-fwu Hwang - One of the best experts on this subject based on the ideXlab platform.

  • Determination of Methylmercury in fish using focused microwave digestion following by Cu2+ addition, sodium tetrapropylborate derivatization, n-heptane extraction, and gas chromatography-mass spectrometry.
    Journal of chromatography. A, 2004
    Co-Authors: Syr-song Chen, Shin-shou Chou, Deng-fwu Hwang
    Abstract:

    The analytical procedure for analysis of Methylmercury in fish was developed. It involves microwave-assisted digestion with alkaline solution (tetramethylammonium hydroxide), addition of Cu2+, aqueous-phase derivatization of Methylmercury with sodium tetrapropylborate, and subsequent extraction with n-heptane. The Methylmercury Derivative was desorbed in the splitless injection port of a gas chromatograph and subsequently analyzed by electron impact mass spectrometry. Optimum conditions allowed sample throughout to be controlled by the instrumental analysis time (near 7 min per sample) but not by the sample preparation step. At the power of 15-30, 45, and 60-75 W, sample preparation time is only 3.5, 2.5, and 1.5 min, respectively. The proposed method was finally validated by the analysis of three biological certified reference materials, BCR CRM 464 tuna fish, NRC DORM-2 dogfish muscle, and NRC DOLT-2 dogfish liver. The detection limit of the overall procedure was found to be 40 ng/g of biological tissue for Methylmercury. The recovery of Methylmercury was 91.2-95.3% for tuna, 89.3-94.7% for marlin, and 91.7-94.8% for shark, respectively. The detected and certified values of Methylmercury of three biological certified reference materials were as follows: 5.34 +/- 0.30 microg/g (mean +/- S.D.) and 5.50 +/- 0.17 microg/g for CRM 464 tuna fish, 4.34 +/- 0.24 and 4.47 +/- 0.32 microg/g for NRC DORM-2 dogfish muscle, and 0.652 +/- 0.053 and 0.693 +/- 0.055 microg/g for NRC DOLT-2 dogfish liver, respectively. It indicated that the method was well available to quantify the Methylmercury in fish.

Syr-song Chen - One of the best experts on this subject based on the ideXlab platform.

  • Determination of Methylmercury in fish using focused microwave digestion following by Cu2+ addition, sodium tetrapropylborate derivatization, n-heptane extraction, and gas chromatography-mass spectrometry.
    Journal of chromatography. A, 2004
    Co-Authors: Syr-song Chen, Shin-shou Chou, Deng-fwu Hwang
    Abstract:

    The analytical procedure for analysis of Methylmercury in fish was developed. It involves microwave-assisted digestion with alkaline solution (tetramethylammonium hydroxide), addition of Cu2+, aqueous-phase derivatization of Methylmercury with sodium tetrapropylborate, and subsequent extraction with n-heptane. The Methylmercury Derivative was desorbed in the splitless injection port of a gas chromatograph and subsequently analyzed by electron impact mass spectrometry. Optimum conditions allowed sample throughout to be controlled by the instrumental analysis time (near 7 min per sample) but not by the sample preparation step. At the power of 15-30, 45, and 60-75 W, sample preparation time is only 3.5, 2.5, and 1.5 min, respectively. The proposed method was finally validated by the analysis of three biological certified reference materials, BCR CRM 464 tuna fish, NRC DORM-2 dogfish muscle, and NRC DOLT-2 dogfish liver. The detection limit of the overall procedure was found to be 40 ng/g of biological tissue for Methylmercury. The recovery of Methylmercury was 91.2-95.3% for tuna, 89.3-94.7% for marlin, and 91.7-94.8% for shark, respectively. The detected and certified values of Methylmercury of three biological certified reference materials were as follows: 5.34 +/- 0.30 microg/g (mean +/- S.D.) and 5.50 +/- 0.17 microg/g for CRM 464 tuna fish, 4.34 +/- 0.24 and 4.47 +/- 0.32 microg/g for NRC DORM-2 dogfish muscle, and 0.652 +/- 0.053 and 0.693 +/- 0.055 microg/g for NRC DOLT-2 dogfish liver, respectively. It indicated that the method was well available to quantify the Methylmercury in fish.