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Melanie J Filiatrault - One of the best experts on this subject based on the ideXlab platform.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2021
    Co-Authors: Yingyu Liu, Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potato. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium P. carotovorum WPP14 is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225-bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2020
    Co-Authors: Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potatoes. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium, P. carotovorum WPP14, is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225 bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

Paul Stodghill - One of the best experts on this subject based on the ideXlab platform.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2021
    Co-Authors: Yingyu Liu, Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potato. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium P. carotovorum WPP14 is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225-bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2020
    Co-Authors: Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potatoes. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium, P. carotovorum WPP14, is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225 bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

Tyler C Helmann - One of the best experts on this subject based on the ideXlab platform.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2021
    Co-Authors: Yingyu Liu, Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potato. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium P. carotovorum WPP14 is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225-bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

  • complete genome sequence resource for the necrotrophic plant pathogenic bacterium pectobacterium carotovorum wpp14
    Plant Disease, 2020
    Co-Authors: Tyler C Helmann, Paul Stodghill, Melanie J Filiatrault
    Abstract:

    Pectobacterium spp. are a major cause of loss in vegetable and ornamental plant production. One of these species, Pectobacterium carotovorum, can cause soft rot disease on many plants, particularly potatoes. These diseases lead to significant economic loss and pose food security threats by reducing crop yields in the field, in transit, and during storage. The Gram-negative enterobacterium, P. carotovorum WPP14, is a particularly virulent strain for which there is no available closed genome, limiting the Molecular Research for this important pathogen. Here, we report a high-quality complete and annotated genome sequence of P. carotovorum WPP14. The 4,892,225 bp genome was assembled with Nanopore reads and polished with Illumina reads, yielding 394× and 164× coverage, respectively. This closed genome provides a resource for Research on improved detection and biology of P. carotovorum, which could translate into improved disease management.

Thomas Mock - One of the best experts on this subject based on the ideXlab platform.

  • Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity
    The Plant cell, 2020
    Co-Authors: Angela Falciatore, Marianne Jaubert, Jean-pierre Bouly, Benjamin Bailleul, Thomas Mock
    Abstract:

    Diatoms are the world's most diverse group of algae, comprising at least 100,000 species. Contributing ;20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the past two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important model systems for diatom Molecular Research, ranging from cell biology to ecophysiology, due to their rapid growth rates, small genomes, and the cumulative wealth of associated genetic resources. To explore the evolutionary divergence of diatoms, additional model species are emerging, such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata. Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology, and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new Molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.

  • diatom Molecular Research comes of age model species for studying phytoplankton biology and diversity
    The Plant Cell, 2020
    Co-Authors: Marianne Jaubert, Angela Falciatore, Jean-pierre Bouly, Benjamin Bailleul, Thomas Mock
    Abstract:

    Diatoms are the most diverse group of algae with at least 100,000 species. Contributing approximately 20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the last two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important references for diatom Molecular Research, ranging from cell biology to ecophysiology, because of their rapid growth rates, small genomes and the cumulative wealth of associated genetic resources. To ascertain the significance of the evolutionary divergence of diatoms, additional references are emerging such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata. Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new Molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.

Angela Falciatore - One of the best experts on this subject based on the ideXlab platform.

  • Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity
    The Plant cell, 2020
    Co-Authors: Angela Falciatore, Marianne Jaubert, Jean-pierre Bouly, Benjamin Bailleul, Thomas Mock
    Abstract:

    Diatoms are the world's most diverse group of algae, comprising at least 100,000 species. Contributing ;20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the past two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important model systems for diatom Molecular Research, ranging from cell biology to ecophysiology, due to their rapid growth rates, small genomes, and the cumulative wealth of associated genetic resources. To explore the evolutionary divergence of diatoms, additional model species are emerging, such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata. Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology, and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new Molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.

  • diatom Molecular Research comes of age model species for studying phytoplankton biology and diversity
    The Plant Cell, 2020
    Co-Authors: Marianne Jaubert, Angela Falciatore, Jean-pierre Bouly, Benjamin Bailleul, Thomas Mock
    Abstract:

    Diatoms are the most diverse group of algae with at least 100,000 species. Contributing approximately 20% of annual global carbon fixation, they underpin major aquatic food webs and drive global biogeochemical cycles. Over the last two decades, Thalassiosira pseudonana and Phaeodactylum tricornutum have become the most important references for diatom Molecular Research, ranging from cell biology to ecophysiology, because of their rapid growth rates, small genomes and the cumulative wealth of associated genetic resources. To ascertain the significance of the evolutionary divergence of diatoms, additional references are emerging such as Fragilariopsis cylindrus and Pseudo-nitzschia multistriata. Here, we describe how functional genomics and reverse genetics have contributed to our understanding of this important class of microalgae in the context of evolution, cell biology and metabolic adaptations. Our review will also highlight promising areas of investigation into the diversity of these photosynthetic organisms, including the discovery of new Molecular pathways governing the life of secondary plastid-bearing organisms in aquatic environments.