The Experts below are selected from a list of 13140 Experts worldwide ranked by ideXlab platform
Derek W. Hollomon - One of the best experts on this subject based on the ideXlab platform.
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rapid detection and diagnosis of septoria tritici epidemics in wheat using a polymerase chain reaction PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.
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Rapid detection and diagnosis of Septoria tritici epidemics in wheat using a polymerase chain reaction/PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.
Bart A. Fraaije - One of the best experts on this subject based on the ideXlab platform.
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rapid detection and diagnosis of septoria tritici epidemics in wheat using a polymerase chain reaction PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.
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Rapid detection and diagnosis of Septoria tritici epidemics in wheat using a polymerase chain reaction/PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.
G. Tolun - One of the best experts on this subject based on the ideXlab platform.
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A real‐time DNase assay (ReDA) based on PicoGreen ® fluorescence
Nucleic acids research, 2003Co-Authors: G. Tolun, Richard S. MyersAbstract:DNA nucleases (DNases) perform a wide variety of important cellular functions and are also very useful for research and in biotechnological applications. Due to the biological and technological importance of DNases and their use in a wide range of applications, DNase activity assays are essential. Traditional DNase assays employ radiolabeled DNA substrates and require separation of the products of the reaction from the unreacted substrate before quantification of enzyme activity. As a consequence, these methods are discontinuous. In this report, we describe a continuous DNase assay based on the differential fluorescence output of a DNA dye ligand called PicoGreen®. The assay was developed to characterize a processive dsDNA exonuclease, lambda exonuclease. The assay appears to have general utility as it is also suitable for measuring the DNA digestion activities of a processive helicase/nuclease, RecBCD, a distributive exonuclease, T7 gene 6 exonuclease, and an endonuclease, DNaseI. The benefits of, and limitations to, the method are discussed.
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A real-time DNase assay (ReDA) based on PicoGreen(R) fluorescence
Nucleic Acids Research, 2003Co-Authors: G. TolunAbstract:DNA nucleases (DNases) perform a wide variety of important cellular functions and are also very useful for research and in biotechnological applications. Due to the biological and technological importance of DNases and their use in a wide range of applications, DNase activity assays are essential. Traditional DNase assays employ radiolabeled DNA substrates and require separation of the products of the reaction from the unreacted substrate before quantification of enzyme activity. As a consequence, these methods are discontinuous. In this report, we describe a continuous DNase assay based on the differential fluorescence output of a DNA dye ligand called PicoGreen. The assay was developed to characterize a processive dsDNA exonuclease, lambda exonuclease. The assay appears to have general utility as it is also suitable for measuring the DNA digestion activities of a processive helicase/nuclease, RecBCD, a distributive exonuclease, T7 gene 6 exonuclease, and an endonuclease, DNaseI. The benefits of, and limitations to, the method are discussed.
Sukhendu Nath - One of the best experts on this subject based on the ideXlab platform.
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Ultrafast Dynamics of a Molecular Rotor-Based Bioprobe-PicoGreen: Understanding toward Fibril Sensing Mechanism.
The journal of physical chemistry. B, 2019Co-Authors: Aruna K. Mora, Sukhendu NathAbstract:A recent report shows that the cyanine-based molecular rotor, PicoGreen, has very strong affinity toward amyloid fibrils and shows large increase in its emission yield upon binding with insulin amyloid fibrils. To gain deeper knowledge about the excited-state molecular processes that are responsible for its amyloid sensing behavior, detailed ultrafast dynamics of PicoGreen in molecular solvents with varying polarity and viscosity have been investigated. Our detailed studies on femtosecond time-resolved emission of PicoGreen show that both polarity and viscosity of the medium a play vital role in the deactivation of its photoexcited state. Detailed analysis of the time-resolved data suggests the formation of the intramolecular charge transfer (ICT) state, which is independent of solvent viscosity, takes place in ultrafast time scales (
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ultrafast dynamics of a molecular rotor based bioprobe PicoGreen understanding toward fibril sensing mechanism
Journal of Physical Chemistry B, 2019Co-Authors: Aruna K. Mora, Sukhendu NathAbstract:A recent report shows that the cyanine-based molecular rotor, PicoGreen, has very strong affinity toward amyloid fibrils and shows large increase in its emission yield upon binding with insulin amyloid fibrils. To gain deeper knowledge about the excited-state molecular processes that are responsible for its amyloid sensing behavior, detailed ultrafast dynamics of PicoGreen in molecular solvents with varying polarity and viscosity have been investigated. Our detailed studies on femtosecond time-resolved emission of PicoGreen show that both polarity and viscosity of the medium a play vital role in the deactivation of its photoexcited state. Detailed analysis of the time-resolved data suggests the formation of the intramolecular charge transfer (ICT) state, which is independent of solvent viscosity, takes place in ultrafast time scales (<2 ps), followed by the formation of a twisted ICT (TICT) state at a longer time scale in polar solvents. The formation of TICT from the ICT state due to the large amplitude ...
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PicoGreen: a better amyloid probe than Thioflavin-T.
Chemical communications (Cambridge England), 2016Co-Authors: Aruna K. Mora, Prabhat K. Singh, Birija S. Patro, Sukhendu NathAbstract:PicoGreen, a cyanine based ultrafast molecular rotor, shows high affinity towards amyloid fibrils and scores a much better sensitivity than Thioflavin-T, a gold standard probe for amyloid fibrils. Detailed spectroscopic and molecular docking studies have been performed to understand the mode of interaction between PicoGreen and amyloid fibrils.
Eric A Rohel - One of the best experts on this subject based on the ideXlab platform.
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rapid detection and diagnosis of septoria tritici epidemics in wheat using a polymerase chain reaction PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.
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Rapid detection and diagnosis of Septoria tritici epidemics in wheat using a polymerase chain reaction/PicoGreen assay
Journal of Applied Microbiology, 1999Co-Authors: Bart A. Fraaije, D. J. Lovell, Eric A Rohel, Derek W. HollomonAbstract:In order to detect and quantify Septoria tritici infection levels in wheat leaves, a polymerase chain reaction (PCR) assay was developed using the β-tubulin gene as target. Specific PCR primers were designed by aligning and comparing β-tubulin sequences from other fungi. The final primer set was selected after being tested against several fungi, and against S. tritici-infected and uninfected wheat leaves from different localities. A single DNA fragment (496 bp) was amplified from S. tritici, whereas no products were generated from DNA of the host plant or other micro-organisms associated with wheat leaves. Using agarose gel analysis, approximately 2 pg S. tritici genomic DNA could be detected in each assay. However, for rapid quantification of PCR-amplified products, a fluorometric microtitre plate-formatted PicoGreen assay was used; this could detect as little as 10 pg S. tritici DNA in the presence of 200 ng wheat leaf DNA. The PCR/PicoGreen assay was applied successfully to study the colonization, infection and subsequent disease development of S. tritici on wheat, both under controlled conditions in the glasshouse and in the field.