Ribose-Phosphate Diphosphokinase

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Dietmar Schomburg - One of the best experts on this subject based on the ideXlab platform.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on HCO3−.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on glucose.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, (27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on phenol.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase, (49) phenol 2-monooxygenase, (50) catechol 2,3-dioxygenase, (51) 2-hydroxymuconate-semialdehyde hydrolase, (52) 2-oxopent-4-enoate hydratase, (53) 4-hydroxy-2-ketovalerate aldolase, (54) aldehyde dehydrogenase, (55) acetate-CoA ligase.

Thomas Ulas - One of the best experts on this subject based on the ideXlab platform.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on HCO3−.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on glucose.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, (27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on phenol.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase, (49) phenol 2-monooxygenase, (50) catechol 2,3-dioxygenase, (51) 2-hydroxymuconate-semialdehyde hydrolase, (52) 2-oxopent-4-enoate hydratase, (53) 4-hydroxy-2-ketovalerate aldolase, (54) aldehyde dehydrogenase, (55) acetate-CoA ligase.

Alexander S. Riemer - One of the best experts on this subject based on the ideXlab platform.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on HCO3−.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on glucose.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, (27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on phenol.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase, (49) phenol 2-monooxygenase, (50) catechol 2,3-dioxygenase, (51) 2-hydroxymuconate-semialdehyde hydrolase, (52) 2-oxopent-4-enoate hydratase, (53) 4-hydroxy-2-ketovalerate aldolase, (54) aldehyde dehydrogenase, (55) acetate-CoA ligase.

Melanie Zaparty - One of the best experts on this subject based on the ideXlab platform.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on HCO3−.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on glucose.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, (27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on phenol.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase, (49) phenol 2-monooxygenase, (50) catechol 2,3-dioxygenase, (51) 2-hydroxymuconate-semialdehyde hydrolase, (52) 2-oxopent-4-enoate hydratase, (53) 4-hydroxy-2-ketovalerate aldolase, (54) aldehyde dehydrogenase, (55) acetate-CoA ligase.

Bettina Siebers - One of the best experts on this subject based on the ideXlab platform.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on HCO3−.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on glucose.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, (27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase.

  • Central carbon metabolism in S. solfataricus with flux distribution for growth on phenol.
    2012
    Co-Authors: Thomas Ulas, Alexander S. Riemer, Melanie Zaparty, Bettina Siebers, Dietmar Schomburg
    Abstract:

    Solid arrows show the used pathways and their directions. Dashed arrows show available but not used pathways. Arrow size represents predicted flux though the pathways. Enzymes in this pathway: (1) glucose 1-dehydrogenase, (2) gluconolactonase, (3) gluconate dehydratase (4) 2-dehydro-3-deoxygluconokinase, (5) 2-dehydro-3-deoxy-phosphogluconate aldolase, (6) glyceraldehyde-3-phosphate dehydrogenase, (7) phosphoglycerate mutase, (8) phosphopyruvate hydratase, (9) pyruvate kinase, (10) pyruvate synthase, (11) citrate (Si)-synthase, (12) aconitate hydratase, (13) isocitrate dehydrogenase, (14) 2-oxoglutarate synthase, (15) succinate-CoA ligase, (16) succinate dehydrogenase, (17) fumarate hydratase, (18) malate dehydrogenase, (19) glucose 1-dehydrogenase, (20) galactonate dehydratase, (21) 2-keto-3-deoxygluconate aldolase, (22) aldehyde dehydrogenase, (23) glycerate kinase, (24) malate dehydrogenase, (25) phosphoenolpyruvate carboxykinase (GTP), (26) phosphoenolpyruvate carboxylase, ((27) pyruvate carboxylase, (28) triose-phosphate isomerase, (29) fructose-bisphosphate aldolase, (30) fructose-bisphosphatase, (31) glucose-6-phosphate isomerase, (32) beta-phosphoglucomutase, (33) glucose-1-phosphate adenylyltransferase, (34) starch synthase, (35) glucan 1,4-alpha-glucosidase, (36) 6-phospho-3-hexuloisomerase, (37) 3-hexulose-6-phosphate synthase, (38) ribose-5-phosphate isomerase, (39) Ribose-Phosphate Diphosphokinase, (40) transketolase, (41) transketolase, (42) sulfite reductase, (43) phosphoadenylyl-sulfate reductase, (44) sulfate adenylyltransferase, (45) adenylyl-sulfate kinase, (46) 3′(2′),5′-bisphosphate nucleotidase, (47) phosphoglycerate kinase, (48) glyceraldehyde-3-phosphate dehydrogenase, (49) phenol 2-monooxygenase, (50) catechol 2,3-dioxygenase, (51) 2-hydroxymuconate-semialdehyde hydrolase, (52) 2-oxopent-4-enoate hydratase, (53) 4-hydroxy-2-ketovalerate aldolase, (54) aldehyde dehydrogenase, (55) acetate-CoA ligase.

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