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Christopher G Chute - One of the best experts on this subject based on the ideXlab platform.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Journal of Biomedical Semantics, 2013
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of authoring. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop, and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the Unified Medical Language System (UMLS) and the formal definitions of the Systematized Nomenclature of Medicine—Clinical Terms (SNOMED CT). We integrated them in a Semantic Web framework (i.e., the Linked Data in a Resource Description Framework [RDF] triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Semantic Web Applications and Tools for Life Sciences, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of crowdsourcing. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the UMLS and the formal definitions of SNOMED CT. We integrated them in a Semantic Web framework (i.e. linked data in a RDF triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • adepedia a scalable and standardized knowledge base of adverse drug events using Semantic Web Technology
    American Medical Informatics Association Annual Symposium, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    A source of Semantically coded Adverse Drug Event (ADE) data can be useful for identifying common phenotypes related to ADEs. We proposed a comprehensive framework for building a standardized ADE knowledge base (called ADEpedia) through combining ontology-based approach with Semantic Web Technology. The framework comprises four primary modules: 1) an XML2RDF transformation module; 2) a data normalization module based on NCBO Open Biomedical Annotator; 3) a RDF store based persistence module; and 4) a front-end module based on a Semantic Wiki for the review and curation. A prototype is successfully implemented to demonstrate the capability of the system to integrate multiple drug data and ontology resources and open Web services for the ADE data standardization. A preliminary evaluation is performed to demonstrate the usefulness of the system, including the performance of the NCBO annotator. In conclusion, the Semantic Web Technology provides a highly scalable framework for ADE data source integration and standard query service.

Guoqian Jiang - One of the best experts on this subject based on the ideXlab platform.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Journal of Biomedical Semantics, 2013
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of authoring. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop, and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the Unified Medical Language System (UMLS) and the formal definitions of the Systematized Nomenclature of Medicine—Clinical Terms (SNOMED CT). We integrated them in a Semantic Web framework (i.e., the Linked Data in a Resource Description Framework [RDF] triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Semantic Web Applications and Tools for Life Sciences, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of crowdsourcing. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the UMLS and the formal definitions of SNOMED CT. We integrated them in a Semantic Web framework (i.e. linked data in a RDF triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • adepedia a scalable and standardized knowledge base of adverse drug events using Semantic Web Technology
    American Medical Informatics Association Annual Symposium, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    A source of Semantically coded Adverse Drug Event (ADE) data can be useful for identifying common phenotypes related to ADEs. We proposed a comprehensive framework for building a standardized ADE knowledge base (called ADEpedia) through combining ontology-based approach with Semantic Web Technology. The framework comprises four primary modules: 1) an XML2RDF transformation module; 2) a data normalization module based on NCBO Open Biomedical Annotator; 3) a RDF store based persistence module; and 4) a front-end module based on a Semantic Wiki for the review and curation. A prototype is successfully implemented to demonstrate the capability of the system to integrate multiple drug data and ontology resources and open Web services for the ADE data standardization. A preliminary evaluation is performed to demonstrate the usefulness of the system, including the performance of the NCBO annotator. In conclusion, the Semantic Web Technology provides a highly scalable framework for ADE data source integration and standard query service.

Harold R Solbrig - One of the best experts on this subject based on the ideXlab platform.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Journal of Biomedical Semantics, 2013
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of authoring. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop, and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the Unified Medical Language System (UMLS) and the formal definitions of the Systematized Nomenclature of Medicine—Clinical Terms (SNOMED CT). We integrated them in a Semantic Web framework (i.e., the Linked Data in a Resource Description Framework [RDF] triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • using Semantic Web Technology to support icd 11 textual definitions authoring
    Semantic Web Applications and Tools for Life Sciences, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    The beta phase of the 11th revision of International Classification of Diseases (ICD-11) intends to accept public input through a distributed model of crowdsourcing. One of the core use cases is to create textual definitions for the ICD categories. The objective of the present study is to design, develop and evaluate approaches to support ICD-11 textual definitions authoring using Semantic Web Technology. We investigated a number of heterogeneous resources related to the definitions of diseases, including the linked open data (LOD) from DBpedia, the textual definitions from the UMLS and the formal definitions of SNOMED CT. We integrated them in a Semantic Web framework (i.e. linked data in a RDF triple store), which is being proposed as a backend in a prototype platform for collaborative authoring of ICD-11 beta. We performed a preliminary evaluation on the usefulness of our approaches and discussed the potential challenges from both technical and clinical perspectives.

  • adepedia a scalable and standardized knowledge base of adverse drug events using Semantic Web Technology
    American Medical Informatics Association Annual Symposium, 2011
    Co-Authors: Guoqian Jiang, Harold R Solbrig, Christopher G Chute
    Abstract:

    A source of Semantically coded Adverse Drug Event (ADE) data can be useful for identifying common phenotypes related to ADEs. We proposed a comprehensive framework for building a standardized ADE knowledge base (called ADEpedia) through combining ontology-based approach with Semantic Web Technology. The framework comprises four primary modules: 1) an XML2RDF transformation module; 2) a data normalization module based on NCBO Open Biomedical Annotator; 3) a RDF store based persistence module; and 4) a front-end module based on a Semantic Wiki for the review and curation. A prototype is successfully implemented to demonstrate the capability of the system to integrate multiple drug data and ontology resources and open Web services for the ADE data standardization. A preliminary evaluation is performed to demonstrate the usefulness of the system, including the performance of the NCBO annotator. In conclusion, the Semantic Web Technology provides a highly scalable framework for ADE data source integration and standard query service.

N Jones - One of the best experts on this subject based on the ideXlab platform.

  • using social networking and Semantic Web Technology in software engineering use cases patterns and a case study
    Journal of Systems and Software, 2008
    Co-Authors: Jens Dietrich, N Jones, Jevon M Wright
    Abstract:

    We present an approach that uses social networking and Semantic Web Technology to share knowledge within the software engineering community. We propose to use existing Web 2.0 services such as social bookmarking and blogs as the infrastructure to share knowledge artefacts. Due to the openness of these services, it is crucial to provide support to establish the trustworthiness of knowledge artefacts. The solution proposed is designed following the original Semantic Web stack architecture and uses existing and emerging W3C Semantic Web standards such as the Resource Description Framework (RDF), the Web Ontology Language (OWL), and the Semantic Web Rule Language (SWRL). The WebOfPatterns project is presented as a case study, which includes an Eclipse plug-in that can be used to discover design pattern definitions in social networks, to define and publish patterns, to rate patterns, to establish the trustworthiness of patterns found, and finally to scan Java projects for instances of discovered patterns. We also propose the ContributedProperties design pattern that can be used to bridge the conceptual gap between RDF resources and objects in an object-oriented programming language.

  • using social networking and Semantic Web Technology in software engineering use cases patterns and a case study
    Australian Software Engineering Conference, 2007
    Co-Authors: Jens Dietrich, N Jones
    Abstract:

    We present an approach that uses social networking and Semantic Web Technology to share knowledge within the software engineering community. We propose to use existing Web 2.0 services such as social bookmarking and blogs as the infrastructure to share knowledge artefacts. Due to the openness of these services, it is crucial to provide support in order to establish the trustworthiness of knowledge artefacts. The solution proposed is designed following the original Semantic Web stack architecture and uses existing and emerging W3C Semantic Web standards such as RDF, OWL, and SWRL. The WebOfPatterns project is presented in a case study. This includes an Eclipse based WebOfPatterns client that can be used to discover design pattern definitions in social networks, to define and publish patterns, to rate patterns, to establish the trustworthiness of patterns found, and finally to x-ray Java projects for instances of discovered patterns.

Jens Dietrich - One of the best experts on this subject based on the ideXlab platform.

  • using social networking and Semantic Web Technology in software engineering use cases patterns and a case study
    Journal of Systems and Software, 2008
    Co-Authors: Jens Dietrich, N Jones, Jevon M Wright
    Abstract:

    We present an approach that uses social networking and Semantic Web Technology to share knowledge within the software engineering community. We propose to use existing Web 2.0 services such as social bookmarking and blogs as the infrastructure to share knowledge artefacts. Due to the openness of these services, it is crucial to provide support to establish the trustworthiness of knowledge artefacts. The solution proposed is designed following the original Semantic Web stack architecture and uses existing and emerging W3C Semantic Web standards such as the Resource Description Framework (RDF), the Web Ontology Language (OWL), and the Semantic Web Rule Language (SWRL). The WebOfPatterns project is presented as a case study, which includes an Eclipse plug-in that can be used to discover design pattern definitions in social networks, to define and publish patterns, to rate patterns, to establish the trustworthiness of patterns found, and finally to scan Java projects for instances of discovered patterns. We also propose the ContributedProperties design pattern that can be used to bridge the conceptual gap between RDF resources and objects in an object-oriented programming language.

  • using social networking and Semantic Web Technology in software engineering use cases patterns and a case study
    Australian Software Engineering Conference, 2007
    Co-Authors: Jens Dietrich, N Jones
    Abstract:

    We present an approach that uses social networking and Semantic Web Technology to share knowledge within the software engineering community. We propose to use existing Web 2.0 services such as social bookmarking and blogs as the infrastructure to share knowledge artefacts. Due to the openness of these services, it is crucial to provide support in order to establish the trustworthiness of knowledge artefacts. The solution proposed is designed following the original Semantic Web stack architecture and uses existing and emerging W3C Semantic Web standards such as RDF, OWL, and SWRL. The WebOfPatterns project is presented in a case study. This includes an Eclipse based WebOfPatterns client that can be used to discover design pattern definitions in social networks, to define and publish patterns, to rate patterns, to establish the trustworthiness of patterns found, and finally to x-ray Java projects for instances of discovered patterns.

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