The Experts below are selected from a list of 291 Experts worldwide ranked by ideXlab platform
Gary Ruvkun - One of the best experts on this subject based on the ideXlab platform.
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lysosomal activity regulates caenorhabditis elegans mitochondrial dynamics through vitamin b12 metabolism
Proceedings of the National Academy of Sciences of the United States of America, 2020Co-Authors: Wei Wei, Gary RuvkunAbstract:Mitochondrial fission and fusion are highly regulated by energy demand and physiological conditions to control the production, activity, and movement of these organelles. Mitochondria are arrayed in a periodic pattern in Caenorhabditis elegans muscle, but this pattern is disrupted by mutations in the mitochondrial fission component dynamin DRP-1. Here we show that the dramatically disorganized mitochondria caused by a mitochondrial fission-defective dynamin mutation is strongly suppressed to a more periodic pattern by a second mutation in lysosomal biogenesis or acidification. Vitamin B12 is normally imported from the bacterial diet via lysosomal degradation of B12-binding proteins and transport of vitamin B12 to the mitochondrion and cytoplasm. We show that the lysosomal dysfunction induced by gene inactivations of lysosomal biogenesis or acidification factors causes vitamin B12 deficiency. Growth of the C. elegans dynamin mutant on an Escherichia coli strain with low vitamin B12 also strongly suppressed the mitochondrial fission defect. Of the two C. elegans enzymes that require B12, gene inactivation of methionine synthase suppressed the mitochondrial fission defect of a dynamin mutation. We show that lysosomal dysfunction induced mitochondrial biogenesis, which is mediated by vitamin B12 deficiency and methionine restriction. S-adenosylmethionine, the methyl donor of many methylation reactions, including histones, is synthesized from methionine by S-adenosylmethionine synthase; inactivation of the sams-1 S-adenosylmethionine synthase also suppresses the drp-1 fission defect, suggesting that vitamin B12 regulates mitochondrial biogenesis and then affects mitochondrial fission via chromatin pathways.
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lysosomal activity regulates caenorhabditis elegans mitochondrial dynamics through vitamin b12 metabolism
bioRxiv, 2020Co-Authors: Wei Wei, Gary RuvkunAbstract:Mitochondrial fission and fusion are highly regulated by energy demand and physiological conditions to control the production, activity, and movement of these organelles. Mitochondria are arrayed in a periodic pattern in Caenorhabditis elegans muscle, but this pattern is disrupted by mutations in the mitochondrial fission component dynamin. Here we show that the dramatically disorganized mitochondria caused by a mitochondrial fission-defective dynamin mutation is strongly suppressed to a more periodic pattern by a second mutation in lysosomal biogenesis or acidification. Vitamin B12 is normally imported from the bacterial diet via lysosomal degradation of B12-binding proteins and transport of vitamin B12 to the mitochondrion and cytoplasm. We show that the lysosomal dysfunction induced by gene inactivations of lysosomal biogenesis or acidification factors causes vitamin B12 deficiency. Growth of the C. elegans dynamin mutant on an E. coli strain with low vitamin B12 also strongly suppressed the mitochondrial fission defect. Of the two C. elegans enzymes that require B12, gene inactivation of methionine synthase suppressed the mitochondrial fission defect of a dynamin mutation. We show that lysosomal dysfunction induced mitochondrial biogenesis which is mediated by vitamin B12 deficiency and methionine restriction. S-adenosylmethionine, the methyl donor of many methylation reactions, including histones, is synthesized from methionine by S-adenosylmethionine synthase; inactivation of the sams-1 S-adenosylmethionine synthase also suppresses the drp-1 fission defect, suggesting that vitamin B12 regulates mitochondrial biogenesis and then affects mitochondrial fission via chromatin pathways.
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Lifespan regulation by evolutionarily conserved genes essential for viability
PLoS Genetics, 2007Co-Authors: Sean P. Curran, Gary RuvkunAbstract:Evolutionarily conserved mechanisms that control aging are predicted to have prereproductive functions in order to be subject to natural selection. Genes that are essential for growth and development are highly conserved in evolution, but their role in longevity has not previously been assessed. We screened 2,700 genes essential for Caenorhabditis elegans development and identified 64 genes that extend lifespan when inactivated postdevelopmentally. These candidate lifespan regulators are highly conserved from yeast to humans. Classification of the candidate lifespan regulators into functional groups identified the expected insulin and metabolic pathways but also revealed enrichment for translation, RNA, and chromatin factors. Many of these essential gene inactivations extend lifespan as much as the strongest known regulators of aging. Early gene inactivations of these essential genes caused growth arrest at larval stages, and some of these arrested animals live much longer than wild-type adults. daf-16 is required for the enhanced survival of arrested larvae, suggesting that the increased longevity is a physiological response to the essential gene inactivation. These results suggest that insulin-signaling pathways play a role in regulation of aging at any stage in life.
Paul F. Hollenberg - One of the best experts on this subject based on the ideXlab platform.
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P450 active site architecture and reversibility: inactivation of cytochromes P450 2B4 and 2B4 T302A by tert-butyl acetylenes.
Biochemistry, 2005Co-Authors: Anna L. Blobaum, Danni L. Harris, Paul F. HollenbergAbstract:The inactivations of P450 2B4 and the T302A mutant of 2B4 by tert-butyl acetylene (tBA) and the inactivation of 2B4 T302A by tert-butyl 1-methyl-2-propynyl ether (tBMP) have been investigated. tBA and tBMP inactivated both enzymes in a mechanism-based manner with the losses in enzymatic activity corresponding closely to losses in P450 heme. HPLC and ESI-LC-MS analysis detected two different tBA- or tBMP-modified heme products with masses of 661 and 705 Da, respectively. Interestingly, the inactivations of the P450s 2B4 by tBA and tBMP were partially reversible by dialysis, and the tBA- or tBMP-modified heme products could only be observed with ESI-LC-MS/MS when the inactivated samples were acidified prior to analysis, indicating a requirement for protons in the formation of stable heme adducts in both the wild-type and mutant 2B4 enzymes. Results of studies using artificial oxidants to support enzyme inactivation suggest that the oxenoid-iron activated oxygen species is preferentially utilized during the inactivation of the P450s 2B4 by tBA. These results argue against the use of a peroxo-iron species by P450 2B4 T302A. Molecular dynamics studies of wild-type P450 2B4 reveal that contiguous hydrogen bond networks, including structural waters, link a conserved glutamate (E301) to the distal oxygen of the peroxo-heme species via threonine 302. Interestingly, models of 2B4 T302A reveal that a compensatory, ordered hydrogen bond network forms despite the removal of T302. These results indicate that while T302 may play a role in proton delivery in the formation of the oxenoid-iron complex and in the stabilization of acetylene heme adducts in 2B4, it is not essential for proton delivery given the presence of E301 in the binding site.
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Mechanism-based inactivation of cytochrome P450 2B1 by N-benzyl-1- aminobenzotriazole
Chemical research in toxicology, 1997Co-Authors: Ute M. Kent, John R. Bend, Beverly A. Chamberlin, Douglas A. Gage, Paul F. HollenbergAbstract:The kinetics of inactivation of cytochrome P450 2B1, the major phenobarbital inducible rat hepatic P450, by N-benzyl-1-aminobenzotriazole (BBT) were characterized. Purified, reconstituted P450 2B1 7-ethoxy-4-(trifluoromethyl)coumarin (7-EFC) O-deethylase activity was inhibited by BBT in a mechanism-based manner. The loss of O-deethylase activity followed pseudo-first-order kinetics and was NADPH and BBT dependent. After a 5 min incubation, greater than 90% of the 2B1 activity was lost, whereas more than 70% of the ability of the reduced enzyme to bind CO was maintained. Inclusion of 10 mM glutathione in the inactivation reaction lowered the rate of inactivation (kinactivation) and increased the partition ratio without significantly affecting the inactivator concentration required for half-maximal inactivation (KI). The maximal rate constant for inactivation at 23 °C was 0.24 min-1 without and 0.15 min-1 with glutathione. The apparent KI was 2 μM in both cases. The extrapolated partition ratios were 4 and ...
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Mechanism-based inactivation of cytochrome P450 2B1 by 2-ethynylnaphthalene: identification of an active-site peptide.
Chemical research in toxicology, 1993Co-Authors: Elizabeth S. Roberts, Nancy Eddy Hopkins, William L. Alworth, Paul F. HollenbergAbstract:The 7-ethoxycoumarin O-deethylase activity of rat liver cytochrome P450 2B1 reconstituted with NADPH-cytochrome P450 reductase and lipid was inactivated by 2-ethynylnaphthalene (2EN) in a time- and NADPH-dependent manner, and the loss of activity followed pseudo-first-order kinetics. The extrapolated KI and kinactivation were 0.08 microM and 0.83 min-1, respectively. The loss of 7-ethoxycoumarin O-deethylation activity displayed a number of characteristics consistent with mechanism-based inactivation, including irreversibility, saturability, protection by an alternate substrate, and the lack of an effect of exogenous nucleophiles on the inactivation. The inactivation was not accompanied by a concomitant loss of spectrally detectable cytochrome P450. HPLC analysis showed that [3H]2EN was irreversibly bound to the protein moiety of cytochrome P450 and the stoichiometry of inactivation was approximately 1.3 mol of 2EN bound per mole of cytochrome P450. Liquid chromatographic and GC-MS analyses of the organic extracts from these incubations showed that the major metabolite was 2-naphthylacetic acid, and a partition ratio of 4-5 mol of acid produced per mole of cytochrome P450 2B1 inactivated was determined. A radiolabeled peptide, approximately 6.5 kDa when analyzed by Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), was isolated by HPLC from a tryptic digest of the [3H]2EN-inactivated cytochrome P450 and NADPH-cytochrome P450 reductase. Sequence data were obtained after cyanogen bromide cleavage of this amino-terminally blocked peptide. These results in conjunction with the results from the cleavage of the intact [3H]2EN-inactivated cytochrome P450 by cyanogen bromide and separation of the peptides either by HPLC or by Tricine-SDS-PAGE followed by transfer of the peptides to a poly(vinylidene difluoride) membrane and sequencing of the labeled peptides from both experiments, led to the identification of a 2EN-modified active-site peptide with the sequence ISLLSLFFAGTETSSTTLRYGFLLM. This corresponds to positions 290-314 in cytochrome P450 2B1. Sequence alignments of cytochrome P450 2B1 with cytochrome P450 2B1 with cytochrome P450 101 predict that this region might correspond to helix I of the bacterial protein [Poulos, T.L. (1988) Pharm. Res. 5, 67-75] that contains a highly conserved threonine residue involved in oxygen binding.
Wei Wei - One of the best experts on this subject based on the ideXlab platform.
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lysosomal activity regulates caenorhabditis elegans mitochondrial dynamics through vitamin b12 metabolism
Proceedings of the National Academy of Sciences of the United States of America, 2020Co-Authors: Wei Wei, Gary RuvkunAbstract:Mitochondrial fission and fusion are highly regulated by energy demand and physiological conditions to control the production, activity, and movement of these organelles. Mitochondria are arrayed in a periodic pattern in Caenorhabditis elegans muscle, but this pattern is disrupted by mutations in the mitochondrial fission component dynamin DRP-1. Here we show that the dramatically disorganized mitochondria caused by a mitochondrial fission-defective dynamin mutation is strongly suppressed to a more periodic pattern by a second mutation in lysosomal biogenesis or acidification. Vitamin B12 is normally imported from the bacterial diet via lysosomal degradation of B12-binding proteins and transport of vitamin B12 to the mitochondrion and cytoplasm. We show that the lysosomal dysfunction induced by gene inactivations of lysosomal biogenesis or acidification factors causes vitamin B12 deficiency. Growth of the C. elegans dynamin mutant on an Escherichia coli strain with low vitamin B12 also strongly suppressed the mitochondrial fission defect. Of the two C. elegans enzymes that require B12, gene inactivation of methionine synthase suppressed the mitochondrial fission defect of a dynamin mutation. We show that lysosomal dysfunction induced mitochondrial biogenesis, which is mediated by vitamin B12 deficiency and methionine restriction. S-adenosylmethionine, the methyl donor of many methylation reactions, including histones, is synthesized from methionine by S-adenosylmethionine synthase; inactivation of the sams-1 S-adenosylmethionine synthase also suppresses the drp-1 fission defect, suggesting that vitamin B12 regulates mitochondrial biogenesis and then affects mitochondrial fission via chromatin pathways.
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lysosomal activity regulates caenorhabditis elegans mitochondrial dynamics through vitamin b12 metabolism
bioRxiv, 2020Co-Authors: Wei Wei, Gary RuvkunAbstract:Mitochondrial fission and fusion are highly regulated by energy demand and physiological conditions to control the production, activity, and movement of these organelles. Mitochondria are arrayed in a periodic pattern in Caenorhabditis elegans muscle, but this pattern is disrupted by mutations in the mitochondrial fission component dynamin. Here we show that the dramatically disorganized mitochondria caused by a mitochondrial fission-defective dynamin mutation is strongly suppressed to a more periodic pattern by a second mutation in lysosomal biogenesis or acidification. Vitamin B12 is normally imported from the bacterial diet via lysosomal degradation of B12-binding proteins and transport of vitamin B12 to the mitochondrion and cytoplasm. We show that the lysosomal dysfunction induced by gene inactivations of lysosomal biogenesis or acidification factors causes vitamin B12 deficiency. Growth of the C. elegans dynamin mutant on an E. coli strain with low vitamin B12 also strongly suppressed the mitochondrial fission defect. Of the two C. elegans enzymes that require B12, gene inactivation of methionine synthase suppressed the mitochondrial fission defect of a dynamin mutation. We show that lysosomal dysfunction induced mitochondrial biogenesis which is mediated by vitamin B12 deficiency and methionine restriction. S-adenosylmethionine, the methyl donor of many methylation reactions, including histones, is synthesized from methionine by S-adenosylmethionine synthase; inactivation of the sams-1 S-adenosylmethionine synthase also suppresses the drp-1 fission defect, suggesting that vitamin B12 regulates mitochondrial biogenesis and then affects mitochondrial fission via chromatin pathways.
Mark Laubach - One of the best experts on this subject based on the ideXlab platform.
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The rat medial frontal cortex controls pace, but not breakpoint, in a progressive ratio licking task.
Behavioral Neuroscience, 2019Co-Authors: Kyra Swanson, Hannah C. Goldbach, Mark LaubachAbstract:: The medial frontal cortex (MFC) is crucial for selecting actions and evaluating their outcomes. Outcome monitoring may be triggered by rostral parts of the MFC, which contain neurons that are modulated by reward consumption and are necessary for the expression of relative reward value. Here, we examined if the MFC further has a role in the control of instrumental licking. We used a progressive ratio licking task in which rats had to make increasing numbers of licks to receive liquid sucrose rewards. We determined what measures of progressive ratio performance are sensitive to value by testing rats with rewards containing 0%-16% sucrose. We found some measures (breakpoint, number of licking bouts) were sensitive to sucrose concentration and others (response rate, duration of licking bouts) were not. Then, we examined the effects of reversibly inactivating rostral (medial orbital) and caudal (prelimbic) parts of the MFC. We were surprised to find that inactivation had no effects on measures associated with value (e.g., breakpoint). Instead, inactivation altered behavioral measures associated with the pace of task performance (response rate and time to break). These effects depended on where inactivations were made. Response rates increased and time to break decreased when the caudal prelimbic area was inactivated. By contrast, response rates decreased and the time to break increased when the rostral medial orbital cortex was inactivated. Our findings suggest that the medial frontal cortex has a role in maintaining task engagement, but not in the motivational control of action, in the progressive ratio licking task. (PsycINFO Database Record (c) 2019 APA, all rights reserved).
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The rat medial frontal cortex controls pace, but not breakpoint, in a progressive ratio licking task
2018Co-Authors: T. Kyra Swanson, Hannah C. Goldbach, Mark LaubachAbstract:The medial frontal cortex (MFC) is crucial for selecting actions and evaluating their outcomes. Outcome monitoring may be triggered by the rostral part of MFC, which contains neurons that are modulated by reward consumption and is necessary for the expression of relative reward value. Here, we examined if the MFC further has a role in the control of instrumental licking. We used a progressive ratio licking task in which rats had to make increasing numbers of licks to receive liquid sucrose rewards. We determined what measures of progressive ratio performance are sensitive to value by testing rats with rewards containing 0-16% sucrose. We found some measures (e.g. breakpoint, number of licking bouts) were sensitive to sucrose concentration and others (e.g. response rate, duration of licking bouts) were not. Then, we examined the effects of reversibly inactivating rostral (medial orbital) and caudal (prelimbic) parts of the MFC. We were surprised to find that inactivation had no effects on measures associated with value (e.g. breakpoint). Instead, inactivation altered behavioral measures associated with the pace of task performance (response rate and time to break). These effects depended on where inactivations were made. Response rates increased and the time to break decreased when the caudal prelimbic area was inactivated. By contrast, response rates decreased and the time to break increased when the rostral medial orbital cortex was inactivated. Our findings suggest that the medial frontal cortex has a role in maintaining task engagement, but not in the motivational control of action, in the progressive ratio licking task.
Virendra M Puri - One of the best experts on this subject based on the ideXlab platform.
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modeling the inactivation of salmonella typhimurium listeria monocytogenes and salmonella enteritidis on poultry products exposed to pulsed uv light
Journal of Food Protection, 2012Co-Authors: Nene Meltem Keklik, Ali Demirci, Virendra M Puri, P H HeinemannAbstract:Pulsed UV light inactivation of Salmonella Typhimurium on unpackaged and vacuum-packaged chicken breast, Listeria monocytogenes on unpackaged and vacuum-packaged chicken frankfurters, and Salmonella Enteritidis on shell eggs was explained by log-linear and Weibull models using inactivation data from previous studies. This study demonstrated that the survival curves of Salmonella Typhimurium and L. monocytogenes were nonlinear exhibiting concavity. The Weibull model was more successful than the log-linear model in estimating the inactivations for all poultry products evaluated, except for Salmonella Enteritidis on shell eggs, for which the survival curve was sigmoidal rather than concave, and the use of the Weibull model resulted in slightly better fit than the log-linear model. The analyses for the goodness of fit and performance of the Weibull model produced root mean square errors of 0.059 to 0.824, percent root mean square errors of 3.105 to 21.182, determination coefficients of 0.747 to 0.989, slopes ...
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modeling the inactivation of escherichia coli o157 h7 and salmonella enterica on raspberries and strawberries resulting from exposure to ozone or pulsed uv light
Journal of Food Engineering, 2008Co-Authors: Katherine L Bialka, Ali Demirci, Virendra M PuriAbstract:Inactivation data for Escherichia coli O157:H7 and Salmonella enterica on raspberries and strawberries resulting from treatment with gaseous ozone, aqueous ozone, or pulsed UV-light were used to construct inactivation models; a log-linear model (based on first-order kinetics) and a Weibull model were developed. Initial analysis indicated that survival curves were non-linear and that the log-linear model failed to accurately estimate the inactivations in most instances. The Weibull model more accurately estimated the inactivation and the concavity exhibited in the survival curves. Validation of the Weibull model produced correlation coefficients of 0.83–0.99 and slopes of 0.76–1.26. The results presented in this study indicated that first-order kinetics are not suitable for the estimation of microbial inactivation on berries treated with ozone or pulsed UV-light, but that the Weibull model can be successfully used to estimate the reductions of E. coli O157:H7 and Salmonella enterica on raspberries and strawberries.
