The Experts below are selected from a list of 363 Experts worldwide ranked by ideXlab platform
Irina R Arkhipova - One of the best experts on this subject based on the ideXlab platform.
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multitasking of the pirna silencing machinery targeting transposable elements and foreign genes in the bdelloid rotifer adineta vaga
Genetics, 2016Co-Authors: Fernando Santos Rodriguez, Irina R ArkhipovaAbstract:RNA-mediated silencing processes play a key role in silencing of transposable elements, especially in the germ line, where piwi-interacting RNAs (piRNAs) are responsible for suppressing transposon mobility and maintaining genome integrity. We previously reported that the genome of Adineta vaga, the first sequenced representative of the phylum Rotifera (class Bdelloidea), is characterized by massive levels of horizontal gene transfer, by unusually low transposon content, and by highly diversified RNA-mediated silencing machinery. Here, we investigate genome-wide distribution of pi-like small RNAs, which in A. vaga are 25-31 nucleotides in length and have a strong 5'-uridine bias, while lacking ping-pong amplification signatures. In agreement with expectations, 71% of mapped reads corresponded to annotated transposons, with 93% of these reads being in the antisense orientation. Unexpectedly, a significant fraction of piRNAs originate from predicted coding regions corresponding to genes of putatively foreign origin. The distribution of piRNAs across foreign genes is not biased toward 3'-UTRs, instead resembling transposons in uniform distribution pattern throughout the gene body, and in predominantly antisense orientation. We also find that genes with small RNA coverage, including a number of genes of metazoan origin, are characterized by higher occurrence of telomeric repeats in the surrounding genomic regions, and by higher density of transposons in the vicinity, which have the potential to promote antisense transcription. Our findings highlight the complex interplay between RNA-based silencing processes and acquisition of genes at the genome periphery, which can result either in their loss or eventual domestication and integration into the host genome.
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multitasking of the pirna silencing machinery targeting transposable elements and foreign genes in the bdelloid rotifer adineta vaga
Genetics, 2016Co-Authors: Fernando Rodríguez, Irina R ArkhipovaAbstract:RNA-mediated silencing processes play a key role in silencing of transposable elements, especially in the germ line, where piRNAs are responsible for suppressing transposon mobility and maintaining genome integrity. We previously reported that the genome of Adineta vaga , the first sequenced representative of the phylum Rotifera (class Bdelloidea), is characterized by massive levels of horizontal gene transfer, by unusually low transposon content, and by highly diversified RNA-mediated silencing machinery. Here, we investigate genome-wide distribution of pi-like small RNAs, which in A. vaga are 25-31 nucleotides in length and have a strong 5' uridine bias, while lacking ping-pong amplification signatures. In agreement with expectations, 71% of mapped reads corresponded to annotated transposons, with 93% of these reads being in the antisense orientation. Unexpectedly, a significant fraction of piRNAs originates from predicted coding regions corresponding to genes of putatively foreign origin. The distribution of piRNAs across foreign genes is not biased towards 3'-UTRs, instead resembling transposons in uniform distribution pattern throughout the gene body, and in predominantly antisense orientation. We also find that genes with small RNA coverage, including a number of genes of metazoan origin, are characterized by higher occurrence of telomeric repeats in the surrounding genomic regions, and by higher density of transposons in the vicinity, which have the potential to promote antisense transcription. Our findings highlight the complex interplay between RNA-based silencing processes and acquisition of genes at the genome periphery, which can result either in their loss or eventual domestication and integration into the host genome.
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a subtelomeric non ltr retrotransposon hebe in the bdelloid rotifer adineta vaga is subject to inactivation by deletions but not 5 truncations
Mobile Dna, 2010Co-Authors: Eugene Gladyshev, Irina R ArkhipovaAbstract:Background Rotifers of the class Bdelloidea are microscopic freshwater invertebrates best known for: their capacity for anhydrobiosis; the lack of males and meiosis; and for the ability to capture genes from other non-metazoan species. Although genetic exchange between these animals might take place by non-canonical means, the overall lack of meiosis and syngamy should greatly impair the ability of transposable elements (TEs) to spread in bdelloid populations. Previous studies demonstrated that bdelloid chromosome ends, in contrast to gene-rich regions, harbour various kinds of TEs, including specialized telomere-associated retroelements, as well as DNA TEs and retrovirus-like retrotransposons which are prone to horizontal transmission. Vertically-transmitted retrotransposons have not previously been reported in bdelloids and their identification and studies of the patterns of their distribution and evolution could help in the understanding of the high degree of TE compartmentalization within bdelloid genomes.
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a subtelomeric non ltr retrotransposon hebe in the bdelloid rotifer adineta vaga is subject to inactivation by deletions but not 5 truncations
Mobile Dna, 2010Co-Authors: Eugene Gladyshev, Irina R ArkhipovaAbstract:Background Rotifers of the class Bdelloidea are microscopic freshwater invertebrates best known for: their capacity for anhydrobiosis; the lack of males and meiosis; and for the ability to capture genes from other non-metazoan species. Although genetic exchange between these animals might take place by non-canonical means, the overall lack of meiosis and syngamy should greatly impair the ability of transposable elements (TEs) to spread in bdelloid populations. Previous studies demonstrated that bdelloid chromosome ends, in contrast to gene-rich regions, harbour various kinds of TEs, including specialized telomere-associated retroelements, as well as DNA TEs and retrovirus-like retrotransposons which are prone to horizontal transmission. Vertically-transmitted retrotransposons have not previously been reported in bdelloids and their identification and studies of the patterns of their distribution and evolution could help in the understanding of the high degree of TE compartmentalization within bdelloid genomes.
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diverse dna transposons in rotifers of the class Bdelloidea
Proceedings of the National Academy of Sciences of the United States of America, 2005Co-Authors: Irina R Arkhipova, Matthew MeselsonAbstract:We surveyed the diversity, structural organization, and patterns of evolution of DNA transposons in rotifers of the class Bdelloidea, a group of basal triploblast animals that appears to have evolved for millions of years without sexual reproduction. Representatives of five superfamilies were identified: ITm (IS630/Tc/mariner), hAT, piggyBac, helitron, and foldback. Except for mariners, no fully intact copies were found. Mariners, both intact and decayed, are present in high copy number, and those described here may be grouped in several closely related lineages. Comparisons across lineages show strong evidence of purifying selection, whereas there is little or no evidence of such selection within lineages. This pattern could have resulted from repeated horizontal transfers from an exogenous source, followed by limited intragenomic proliferation, or, less plausibly, from within-host formation of new lineages under host- or element-based selection for function, in either case followed by eventual inactivation and decay. Unexpectedly, the flanking sequences surrounding the majority of mariners are very similar, indicating either insertion specificity or proliferation as part of larger DNA segments. Members of all superfamilies are present near chromosome ends, associated with the apparently domesticated retroelement Athena, in large clusters composed of diverse DNA transposons, often inserted into each other, whereas the examined gene-rich regions are nearly transposon-free.
Matthew Meselson - One of the best experts on this subject based on the ideXlab platform.
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Phylogenomics of unusual histone H2A Variants in Bdelloid rotifers.
PLOS Genetics, 2009Co-Authors: Karine Van Doninck, Morgan Mandigo, Peter Wang, Julien Guglielmini, Michel C. Milinkovitch, William S. Lane, Matthew MeselsonAbstract:Rotifers of Class Bdelloidea are remarkable in having evolved for millions of years, apparently without males and meiosis. In addition, they are unusually resistant to desiccation and ionizing radiation and are able to repair hundreds of radiation-induced DNA double-strand breaks per genome with little effect on viability or reproduction. Because specific histone H2A variants are involved in DSB repair and certain meiotic processes in other eukaryotes, we investigated the histone H2A genes and proteins of two bdelloid species. Genomic libraries were built and probed to identify histone H2A genes in Adineta vaga and Philodina roseola, species representing two different bdelloid families. The expressed H2A proteins were visualized on SDS-PAGE gels and identified by tandem mass spectrometry. We find that neither the core histone H2A, present in nearly all other eukaryotes, nor the H2AX variant, a ubiquitous component of the eukaryotic DSB repair machinery, are present in bdelloid rotifers. Instead, they are replaced by unusual histone H2A variants of higher mass. In contrast, a species of rotifer belonging to the facultatively sexual, desiccation- and radiation-intolerant sister class of bdelloid rotifers, the monogononts, contains a canonical core histone H2A and appears to lack the bdelloid H2A variant genes. Applying phylogenetic tools, we demonstrate that the bdelloid-specific H2A variants arose as distinct lineages from canonical H2A separate from those leading to the H2AX and H2AZ variants. The replacement of core H2A and H2AX in bdelloid rotifers by previously uncharacterized H2A variants with extended carboxy-terminal tails is further evidence for evolutionary diversity within this class of histone H2A genes and may represent adaptation to unusual features specific to bdelloid rotifers.
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degenerate tetraploidy was established before bdelloid rotifer families diverged
Molecular Biology and Evolution, 2009Co-Authors: Morgan Mandigo, Karine Van Doninck, Matthew MeselsonAbstract:Rotifers of Class Bdelloidea are abundant freshwater invertebrates known for their remarkable ability to survive desiccation and their lack of males and meiosis. Sequencing and annotation of approximately 50-kb regions containing the four hsp82 heat shock genes of the bdelloid Philodina roseola, each located on a separate chromosome, have suggested that its genome is that of a degenerate tetraploid. In order to determine whether a similar structure exists in a bdelloid distantly related to P. roseola and if degenerate tetraploidy was established before the two species separated, we sequenced regions containing the hsp82 genes of a bdelloid belonging to a different family, Adineta vaga, and the histone gene clusters of P. roseola and A. vaga. Our findings are entirely consistent with degenerate tetraploidy and show that it was established before the two bdelloid families diverged and therefore probably before the bdelloid radiation.
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Evidence for Degenerate Tetraploidy in Bdelloid Rotifers
Proceedings of the National Academy of Sciences of the United States of America, 2008Co-Authors: David B. Mark Welch, Jessica L. Mark Welch, Matthew MeselsonAbstract:Rotifers of class Bdelloidea have evolved for millions of years apparently without sexual reproduction. We have sequenced 45- to 70-kb regions surrounding the four copies of the hsp82 gene of the bdelloid rotifer Philodina roseola, each of which is on a separate chromosome. The four regions comprise two colinear gene-rich pairs with gene content, order, and orientation conserved within each pair. Only a minority of genes are common to both pairs, also in the same orientation and order, but separated by gene-rich segments present in only one or the other pair. The pattern is consistent with degenerate tetraploidy with numerous segmental deletions, some in one pair of colinear chromosomes and some in the other. Divergence in 1,000-bp windows varies along an alignment of a colinear pair, from zero to as much as 20% in a pattern consistent with gene conversion associated with recombinational repair of DNA double-strand breaks. Although pairs of colinear chromosomes are a characteristic of sexually reproducing diploids and polyploids, a quite different explanation for their presence in bdelloids is suggested by the recent finding that bdelloid rotifers can recover and resume reproduction after suffering hundreds of radiation-induced DNA double-strand breaks per oocyte nucleus. Because bdelloid primary oocytes are in G1 and therefore lack sister chromatids, we propose that bdelloid colinear chromosome pairs are maintained as templates for the repair of DNA double-strand breaks caused by the frequent desiccation and rehydration characteristic of bdelloid habitats.
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Extreme resistance of bdelloid rotifers to ionizing radiation
Proceedings of the National Academy of Sciences of the United States of America, 2008Co-Authors: Evgeniy Gladyshev, Matthew MeselsonAbstract:Rotifers of class Bdelloidea are common invertebrate animals with highly unusual characteristics, including apparently obligate asexuality, the ability to resume reproduction after desiccation at any life stage, and a paucity of transposable genetic elements of types not prone to horizontal transmission. We find that bdelloids are also extraordinarily resistant to ionizing radiation (IR). Reproduction of the bdelloids Adineta vaga and Philodina roseola is much more resistant to IR than that of Euchlanis dilatata, a rotifer belonging to the desiccation-intolerant and facultatively sexual class Monogononta, and all other animals for which we have found relevant data. By analogy with the desiccation- and radiation-resistant bacterium Deinococcus radiodurans, we suggest that the extraordinary radiation resistance of bdelloid rotifers is a consequence of their evolutionary adaptation to survive episodes of desiccation encountered in their characteristic habitats and that the damage incurred in such episodes includes DNA breakage that is repaired upon rehydration. Such breakage and repair may have maintained bdelloid chromosomes as colinear pairs and kept the load of transposable genetic elements low and may also have contributed to the success of bdelloid rotifers in avoiding the early extinction suffered by most asexuals.
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diverse dna transposons in rotifers of the class Bdelloidea
Proceedings of the National Academy of Sciences of the United States of America, 2005Co-Authors: Irina R Arkhipova, Matthew MeselsonAbstract:We surveyed the diversity, structural organization, and patterns of evolution of DNA transposons in rotifers of the class Bdelloidea, a group of basal triploblast animals that appears to have evolved for millions of years without sexual reproduction. Representatives of five superfamilies were identified: ITm (IS630/Tc/mariner), hAT, piggyBac, helitron, and foldback. Except for mariners, no fully intact copies were found. Mariners, both intact and decayed, are present in high copy number, and those described here may be grouped in several closely related lineages. Comparisons across lineages show strong evidence of purifying selection, whereas there is little or no evidence of such selection within lineages. This pattern could have resulted from repeated horizontal transfers from an exogenous source, followed by limited intragenomic proliferation, or, less plausibly, from within-host formation of new lineages under host- or element-based selection for function, in either case followed by eventual inactivation and decay. Unexpectedly, the flanking sequences surrounding the majority of mariners are very similar, indicating either insertion specificity or proliferation as part of larger DNA segments. Members of all superfamilies are present near chromosome ends, associated with the apparently domesticated retroelement Athena, in large clusters composed of diverse DNA transposons, often inserted into each other, whereas the examined gene-rich regions are nearly transposon-free.
Raquel Aparecida Moreira - One of the best experts on this subject based on the ideXlab platform.
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TAXAS DE FILTRAÇÃO E INGESTÃO DE UMA MICROALGA POR Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:RESUMORotíferos possuem um importante papel nos ciclos biogeoquímicos e na produtividade orgânica dos ecossistemas de água doce em decorrência de suas elevadas taxas metabólicas. Informações sobre a filtração, seu principal processo de aquisição de energia, são relevantes e ainda escassos para a região tropical. Os rotíferos da Subclasse Bdelloidea alimentam-se por filtração ou raspagem consumindo pequenos itens alimentares, como bactérias, algas, leveduras ou matéria orgânica particulada. Sabemos pouco sobre o papel que desempenham na dinâmica trófica dos habitats que ocupam e por isso o objetivo deste estudo foi quantificar em laboratório as taxas de filtração e ingestão do rotífero Philodina roseola, alimentado com Raphidocelis subcapitata. O delineamento experimental consistiu na exposição de 10 rotíferos adultos por tratamento, em cinco concentrações que variaram entre 104 e 107 cels mL-1, mantidos sob temperatura de 25 ± 1 °C. Os experimentos tiveram a duração de 1 hora e as concentrações iniciais e finais da suspensão algal foram quantificadas por contagem numérica das células em câmara de Neubauer. Não foram encontradas diferenças significativas entre as concentrações iniciais e finais de células nos controles indicando não ter ocorrido crescimento algal. As taxas de filtração de P. roseola variaram entre 0,09 e 0,25 mL ind-1 h-1. Tendo em vista que a filtração é o principal processo de aquisição de energia de Philodina roseola, assim como dos demais rotíferos, e que está relacionada a questões importantes da dinâmica trófica dos ecossistemas aquáticos, informações adicionais são desejáveis mas necessitam, no entanto, ser ampliadas para outros tipos de alimento e para diferentes combinações de condições experimentais.Rates of Filtration and Ingestion of a Microalga by Philodina roseola (Rotifera: Bdelloidea)ABSTRACTRotifers play an important role in biogeochemical cycles and organic productivity of freshwater ecosystems due to their high metabolic rates. Information on filter feeding, their main process of energy acquisition, are relevant and still scarce for tropical regions. The rotifers of the class Bdelloidea feed by filtration or scraping consuming small food items, such as bacteria, algae, yeasts or particulate organic matter. We know little of their role in the trophic dynamics in the habitats they occupy and so the aim of this study was to quantify laboratory filtration and ingestion rates of the rotifer Philodina roseola, fed with Raphidocelis subcapitata. The experiment consisted of 10 adult exposure treatment at five concentrations approximately in the range between 104 and 107 cells mL-1, at the temperature of 25 ± 1 °C. The experiments lasted one hour and initial and final concentrations of the algal suspensions were determined by counting the number of cells in a Neubauer chamber. There were no significant differences between the initial and final concentrations of cells in the control group indicating that algal growth did not occur. Philodina roseola filtration rates varied between 0.09 and 0.25 mL ind-1 h-1. Given that filtration is the main process of energy acquisition by Philodina roseola, as well as for most other rotifers, and that it comprises important issues related to trophic dynamics of aquatic ecosystems, additional experimental information is especially important and need to be extended to other types of food and combinations of experimental conditions.Tasas de filtración e ingestión de una microalga por Philodina roseola (Rotifera: Bdelloidea)RESUMENLos rotíferos desempeñan un importante papel en los ciclos biogeoquímicos y en la productividad orgánica de los ecosistemas de agua dulce como consecuencia de sus elevadas tasas metabólicas. Es relevante la información sobre la filtración, su principal proceso de adquisición de energía, la cual es todavía escasa para la región tropical. Los rotíferos de la subclase Bdelloidea se alimentan por filtración o raspaje, consumiendo pequeños elementos alimentícios, como bacterias, algas, levaduras o materia orgánica particulada. Sabemos poco del papel que desempeñan en la dinámica trófica de los hábitats que ocupan, y por eso el objetivo de este estudio fue cuantificar en laboratorio las tasas de filtración e ingestión del rotífero Philodina roseola, alimentado con Raphidocelis subcapitata. El experimento consistió en la exposición de diez adultos por tratamiento en concentraciones entre 1x104 y 1x107 células mL-1 y bajo temperatura de 25±1 °C. Los experimentos tuvieron la duración de una hora y las concentraciones iniciales y finales de la suspensión algal fueron cuantificadas por conteo numérico de las células en cámara de Neubauer. No fueron encontradas diferencias significativas entre las concentraciones iniciales y finales de células en los controles, lo cual indica que no se presentó crecimiento algal. Las tasas de filtración de P. roseola variaron entre 0,09 y 0,25 mL ind-1 h-1. Teniendo en cuenta que la filtración es el principal proceso de adquisición de energía de la Philodina roseola, así como de los demás rotíferos, y que comprende cuestiones importantes relacionadas con la dinámica trófica de los ecosistemas acuáticos, es importante ampliar la información con experimentos usando otros tipos de alimento y diferentes combinaciones de las condiciones experimentales.
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Rates of Filtration and Ingestion of a Microalga by Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:Rotifers play an important role in biogeochemical cycles and organic productivity of freshwater ecosystems due to their high metabolic rates. Information on filter feeding, their main process of energy acquisition, are relevant and still scarce for tropical regions. The rotifers of the class Bdelloidea feed by filtration or scraping consuming small food items, such as bacteria, algae, yeasts or particulate organic matter. We know little of their role in the trophic dynamics in the habitats they occupy and so the aim of this study was to quantify laboratory filtration and ingestion rates of the rotifer Philodina roseola, fed with Raphidocelis subcapitata. The experiment consisted of 10 adult exposure treatment at five concentrations approximately in the range between 104 and 107 cells mL-1, at the temperature of 25 ± 1 °C. The experiments lasted one hour and initial and final concentrations of the algal suspensions were determined by counting the number of cells in a Neubauer chamber. There were no significant differences between the initial and final concentrations of cells in the control group indicating that algal growth did not occur. Philodina roseola filtration rates varied between 0.09 and 0.25 mL ind-1 h-1. Given that filtration is the main process of energy acquisition by Philodina roseola, as well as for most other rotifers, and that it comprises important issues related to trophic dynamics of aquatic ecosystems, additional experimental information is especially important and need to be extended to other types of food and combinations of experimental conditions
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TAXAS DE FILTRAÇÃO E INGESTÃO DE UMA MICROALGA POR Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:Los rotíferos desempeñan un importante papel en los ciclos biogeoquímicos y en la productividad orgánica de los ecosistemas de agua dulce como consecuencia de sus elevadas tasas metabólicas. Es relevante la información sobre la filtración, su principal proceso de adquisición de energía, la cual es todavía escasa para la región tropical. Los rotíferos de la subclase Bdelloidea se alimentan por filtración o raspaje, consumiendo pequeños elementos alimentícios, como bacterias, algas, levaduras o materia orgánica particulada. Sabemos poco del papel que desempeñan en la dinámica trófica de los hábitats que ocupan, y por eso el objetivo de este estudio fue cuantificar en laboratorio las tasas de filtración e ingestión del rotífero Philodina roseola , alimentado con Raphidocelis subcapitata . El experimento consistió en la exposición de diez adultos por tratamiento en concentraciones entre 1x10 4 y 1x10 7 células mL -1 y bajo temperatura de 25±1 °C. Los experimentos tuvieron la duración de una hora y las concentraciones iniciales y finales de la suspensión algal fueron cuantificadas por conteo numérico de las células en cámara de Neubauer. No fueron encontradas diferencias significativas entre las concentraciones iniciales y finales de células en los controles, lo cual indica que no se presentó crecimiento algal. Las tasas de filtración de P. roseola variaron entre 0,09 y 0,25 mL ind -1 h -1 . Teniendo en cuenta que la filtración es el principal proceso de adquisición de energía de la Philodina roseola , así como de los demás rotíferos, y que comprende cuestiones importantes relacionadas con la dinámica trófica de los ecosistemas acuáticos, es importante ampliar la información con experimentos usando otros tipos de alimento y diferentes combinaciones de las condiciones experimentales
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Estudos biológicos e ecotoxicológicos da espécie Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea)
Universidade Federal de São Carlos, 2014Co-Authors: Raquel Aparecida MoreiraAbstract:No Brasil e em outros países o agrotóxico carbofurano é amplamente utilizado, podendo atingir as águas doces e ocasionar danos a organismos não-alvo. Os rotíferos dominam o zooplâncton da maioria dos ambientes aquáticos em todo o mundo, tanto em número de espécies como em densidade. No presente trabalho, estudos biológicos e ecotoxicológicos em laboratório com a espécie Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea) foram realizados, em relação aos principais aspectos de sua biologia: ciclo de vida, taxas de filtração, ingestão e produção secundária a 25 1,0 C, além de testar sua sensibilidade e desempenho como organismo-teste para estudos ecotoxicológicos. Realizou-se uma revisão de literatura sobre a utilização de rotíferos como organismos-teste na avaliação da toxicidade de pesticidas em águas doces, para as últimas três décadas. Experimentos foram realizados para determinar as taxas de filtração e de ingestão de P roseola, alimentadas com Raphidocelis subcapitata em 7 concentrações diferentes. A biomassa (μg PS. ind-1) e a produção secundária individual foram determinadas. Os principais parâmetros do ciclo de vida de P. roseola foram: desenvolvimento embrionário de 23,88 3,82 horas; idade da primípara de 3,5 dias; fecundidade total média de 22,33 2,29 ovos/fêmea e longevidade máxima de 23 dias. As taxas de filtração variaram entre 2,715 e 6,615 mL ind-1d-1. A produção secundária total foi de 0, 285692 0,055185 μg ind-1d-1 sendo 84,68 3,65 % desta alocada em reprodução. P. roseola é uma espécie adequada como organismo-teste em estudos ecotoxicológicos considerando-se o conjunto de características de seu ciclo de vida e as respostas ao pesticida carbofurano com valores de CE50 48-h de 13,36 2,63 mg L-1 e 89,32 6,52 mg L-1 para o ingrediente ativo e o produto formulado respectivamente. Concluiu-se que P. roseola tem rápido tempo de desenvolvimento, elevado metabolismo em relação às taxas de ingestão e filtração, elevada fecundidade e moderada sensibilidade ao pesticida testado. Estudos sobre suas respostas funcionais a outras combinações de fatores e sua sensibilidade a outros compostos tóxicos deverão ser realizados.In Brazil and other countries the agrochemical carbofurano is largely used, and can reach freshwaters and cause damages to non-target organisms. Rotifera dominates zooplankton communities of most freshwater ecosystems worldwide, both in number of species and density. In the present work biological and ecotoxicological studies in laboratory were carried out with the species Philodina roseola Ehrenberg, 1830 (Rotifera, Bdelloidea) regarding the main aspects of its biology: life cycle, filtration rates, ingestion and secondary production at 25 1.0 C, besides testing its sensitivity and performance as a test-organism for ecotoxicological studies. Also, a literature review regarding the use of rotifers as testorganisms in the evaluation of pesticides toxicity in freshwaters was carried out for the last three decades. Experiments were performed aiming to assess filtration and ingestion rates of P. roseola feeding on the microalgae Raphidocelis subcapitata at 7 different concentrations. The individual biomass (μg DW ind-1) and secondary production were determined. The main parameters obtained for P. roseola life cycle were: 23.88 3.82 hours duration of embryonic development; 3.5 days generation time; 22.33 2.29 eggs/female total mean fecundity and 23.0 days maximum longevity. Filtration rates varied between 2.715 and 6.615 ml ind-1d-1. Total mean individual secondary production was 0.285692 0.055185 μg ind-1d-1 from which 73.42 5.62 % was allocated into reproduction. P. roseola was an adequate test-organism for ecotoxicological studies considering the life cycle characteristics and response to the pesticide carbofurano with CE50 48-h values of 13.36 2.63 mg L-1 and 89.32 6.52 mg L-1 for the active ingredient and the commercial product, respectively. It was concluded that P. roseola has a fast development time, high metabolism as related to ingestion and filtration rates, high fecundity and moderate sensitivity to the tested pesticide. Studies on its functional response to other factors combinations and sensitivity to other toxicants should be performed
Odete Rocha - One of the best experts on this subject based on the ideXlab platform.
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TAXAS DE FILTRAÇÃO E INGESTÃO DE UMA MICROALGA POR Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:RESUMORotíferos possuem um importante papel nos ciclos biogeoquímicos e na produtividade orgânica dos ecossistemas de água doce em decorrência de suas elevadas taxas metabólicas. Informações sobre a filtração, seu principal processo de aquisição de energia, são relevantes e ainda escassos para a região tropical. Os rotíferos da Subclasse Bdelloidea alimentam-se por filtração ou raspagem consumindo pequenos itens alimentares, como bactérias, algas, leveduras ou matéria orgânica particulada. Sabemos pouco sobre o papel que desempenham na dinâmica trófica dos habitats que ocupam e por isso o objetivo deste estudo foi quantificar em laboratório as taxas de filtração e ingestão do rotífero Philodina roseola, alimentado com Raphidocelis subcapitata. O delineamento experimental consistiu na exposição de 10 rotíferos adultos por tratamento, em cinco concentrações que variaram entre 104 e 107 cels mL-1, mantidos sob temperatura de 25 ± 1 °C. Os experimentos tiveram a duração de 1 hora e as concentrações iniciais e finais da suspensão algal foram quantificadas por contagem numérica das células em câmara de Neubauer. Não foram encontradas diferenças significativas entre as concentrações iniciais e finais de células nos controles indicando não ter ocorrido crescimento algal. As taxas de filtração de P. roseola variaram entre 0,09 e 0,25 mL ind-1 h-1. Tendo em vista que a filtração é o principal processo de aquisição de energia de Philodina roseola, assim como dos demais rotíferos, e que está relacionada a questões importantes da dinâmica trófica dos ecossistemas aquáticos, informações adicionais são desejáveis mas necessitam, no entanto, ser ampliadas para outros tipos de alimento e para diferentes combinações de condições experimentais.Rates of Filtration and Ingestion of a Microalga by Philodina roseola (Rotifera: Bdelloidea)ABSTRACTRotifers play an important role in biogeochemical cycles and organic productivity of freshwater ecosystems due to their high metabolic rates. Information on filter feeding, their main process of energy acquisition, are relevant and still scarce for tropical regions. The rotifers of the class Bdelloidea feed by filtration or scraping consuming small food items, such as bacteria, algae, yeasts or particulate organic matter. We know little of their role in the trophic dynamics in the habitats they occupy and so the aim of this study was to quantify laboratory filtration and ingestion rates of the rotifer Philodina roseola, fed with Raphidocelis subcapitata. The experiment consisted of 10 adult exposure treatment at five concentrations approximately in the range between 104 and 107 cells mL-1, at the temperature of 25 ± 1 °C. The experiments lasted one hour and initial and final concentrations of the algal suspensions were determined by counting the number of cells in a Neubauer chamber. There were no significant differences between the initial and final concentrations of cells in the control group indicating that algal growth did not occur. Philodina roseola filtration rates varied between 0.09 and 0.25 mL ind-1 h-1. Given that filtration is the main process of energy acquisition by Philodina roseola, as well as for most other rotifers, and that it comprises important issues related to trophic dynamics of aquatic ecosystems, additional experimental information is especially important and need to be extended to other types of food and combinations of experimental conditions.Tasas de filtración e ingestión de una microalga por Philodina roseola (Rotifera: Bdelloidea)RESUMENLos rotíferos desempeñan un importante papel en los ciclos biogeoquímicos y en la productividad orgánica de los ecosistemas de agua dulce como consecuencia de sus elevadas tasas metabólicas. Es relevante la información sobre la filtración, su principal proceso de adquisición de energía, la cual es todavía escasa para la región tropical. Los rotíferos de la subclase Bdelloidea se alimentan por filtración o raspaje, consumiendo pequeños elementos alimentícios, como bacterias, algas, levaduras o materia orgánica particulada. Sabemos poco del papel que desempeñan en la dinámica trófica de los hábitats que ocupan, y por eso el objetivo de este estudio fue cuantificar en laboratorio las tasas de filtración e ingestión del rotífero Philodina roseola, alimentado con Raphidocelis subcapitata. El experimento consistió en la exposición de diez adultos por tratamiento en concentraciones entre 1x104 y 1x107 células mL-1 y bajo temperatura de 25±1 °C. Los experimentos tuvieron la duración de una hora y las concentraciones iniciales y finales de la suspensión algal fueron cuantificadas por conteo numérico de las células en cámara de Neubauer. No fueron encontradas diferencias significativas entre las concentraciones iniciales y finales de células en los controles, lo cual indica que no se presentó crecimiento algal. Las tasas de filtración de P. roseola variaron entre 0,09 y 0,25 mL ind-1 h-1. Teniendo en cuenta que la filtración es el principal proceso de adquisición de energía de la Philodina roseola, así como de los demás rotíferos, y que comprende cuestiones importantes relacionadas con la dinámica trófica de los ecosistemas acuáticos, es importante ampliar la información con experimentos usando otros tipos de alimento y diferentes combinaciones de las condiciones experimentales.
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Rates of Filtration and Ingestion of a Microalga by Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:Rotifers play an important role in biogeochemical cycles and organic productivity of freshwater ecosystems due to their high metabolic rates. Information on filter feeding, their main process of energy acquisition, are relevant and still scarce for tropical regions. The rotifers of the class Bdelloidea feed by filtration or scraping consuming small food items, such as bacteria, algae, yeasts or particulate organic matter. We know little of their role in the trophic dynamics in the habitats they occupy and so the aim of this study was to quantify laboratory filtration and ingestion rates of the rotifer Philodina roseola, fed with Raphidocelis subcapitata. The experiment consisted of 10 adult exposure treatment at five concentrations approximately in the range between 104 and 107 cells mL-1, at the temperature of 25 ± 1 °C. The experiments lasted one hour and initial and final concentrations of the algal suspensions were determined by counting the number of cells in a Neubauer chamber. There were no significant differences between the initial and final concentrations of cells in the control group indicating that algal growth did not occur. Philodina roseola filtration rates varied between 0.09 and 0.25 mL ind-1 h-1. Given that filtration is the main process of energy acquisition by Philodina roseola, as well as for most other rotifers, and that it comprises important issues related to trophic dynamics of aquatic ecosystems, additional experimental information is especially important and need to be extended to other types of food and combinations of experimental conditions
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TAXAS DE FILTRAÇÃO E INGESTÃO DE UMA MICROALGA POR Philodina roseola (Rotifera: Bdelloidea)
Universidad Nacional de Colombia, 2016Co-Authors: Raquel Aparecida Moreira, Adrislaine Da Silva Mansano, Odete RochaAbstract:Los rotíferos desempeñan un importante papel en los ciclos biogeoquímicos y en la productividad orgánica de los ecosistemas de agua dulce como consecuencia de sus elevadas tasas metabólicas. Es relevante la información sobre la filtración, su principal proceso de adquisición de energía, la cual es todavía escasa para la región tropical. Los rotíferos de la subclase Bdelloidea se alimentan por filtración o raspaje, consumiendo pequeños elementos alimentícios, como bacterias, algas, levaduras o materia orgánica particulada. Sabemos poco del papel que desempeñan en la dinámica trófica de los hábitats que ocupan, y por eso el objetivo de este estudio fue cuantificar en laboratorio las tasas de filtración e ingestión del rotífero Philodina roseola , alimentado con Raphidocelis subcapitata . El experimento consistió en la exposición de diez adultos por tratamiento en concentraciones entre 1x10 4 y 1x10 7 células mL -1 y bajo temperatura de 25±1 °C. Los experimentos tuvieron la duración de una hora y las concentraciones iniciales y finales de la suspensión algal fueron cuantificadas por conteo numérico de las células en cámara de Neubauer. No fueron encontradas diferencias significativas entre las concentraciones iniciales y finales de células en los controles, lo cual indica que no se presentó crecimiento algal. Las tasas de filtración de P. roseola variaron entre 0,09 y 0,25 mL ind -1 h -1 . Teniendo en cuenta que la filtración es el principal proceso de adquisición de energía de la Philodina roseola , así como de los demás rotíferos, y que comprende cuestiones importantes relacionadas con la dinámica trófica de los ecosistemas acuáticos, es importante ampliar la información con experimentos usando otros tipos de alimento y diferentes combinaciones de las condiciones experimentales
Thomas Hankeln - One of the best experts on this subject based on the ideXlab platform.
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Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host
'Springer Science and Business Media LLC', 2021Co-Authors: Katharina M. Mauer, Thomas Hankeln, Hanno Schmidt, Marco Dittrich, Andreas C. Fröbius, Sören Lukas Hellmann, Hans Zischler, Holger HerlynAbstract:Abstract Background Seisonidea (also Seisonacea or Seisonidae) is a group of small animals living on marine crustaceans (Nebalia spec.) with only four species described so far. Its monophyletic origin with mostly free-living wheel animals (Monogononta, Bdelloidea) and endoparasitic thorny-headed worms (Acanthocephala) is widely accepted. However, the phylogenetic relationships inside the Rotifera-Acanthocephala clade (Rotifera sensu lato or Syndermata) are subject to ongoing debate, with consequences for our understanding of how genomes and lifestyles might have evolved. To gain new insights, we analyzed first drafts of the genome and transcriptome of the key taxon Seisonidea. Results Analyses of gDNA-Seq and mRNA-Seq data uncovered two genetically distinct lineages in Seison nebaliae Grube, 1861 off the French Channel coast. Their mitochondrial haplotypes shared only 82% sequence identity despite identical gene order. In the nuclear genome, distinct linages were reflected in different gene compactness, GC content and codon usage. The haploid nuclear genome spans ca. 46 Mb, of which 96% were reconstructed. According to ~ 23,000 SuperTranscripts, gene number in S. nebaliae should be within the range published for other members of Rotifera-Acanthocephala. Consistent with this, numbers of metazoan core orthologues and ANTP-type transcriptional regulatory genes in the S. nebaliae genome assembly were between the corresponding numbers in the other assemblies analyzed. We additionally provide evidence that a basal branching of Seisonidea within Rotifera-Acanthocephala could reflect attraction to the outgroup. Accordingly, rooting via a reconstructed ancestral sequence led to monophyletic Pararotatoria (Seisonidea+Acanthocephala) within Hemirotifera (Bdelloidea+Pararotatoria). Conclusion Matching genome/transcriptome metrics with the above phylogenetic hypothesis suggests that a haploid nuclear genome of about 50 Mb represents the plesiomorphic state for Rotifera-Acanthocephala. Smaller genome size in S. nebaliae probably results from subsequent reduction. In contrast, genome size should have increased independently in monogononts as well as bdelloid and acanthocephalan stem lines. The present data additionally indicate a decrease in gene repertoire from free-living to epizoic and endoparasitic lifestyles. Potentially, this reflects corresponding steps from the root of Rotifera-Acanthocephala via the last common ancestors of Hemirotifera and Pararotatoria to the one of Acanthocephala. Lastly, rooting via a reconstructed ancestral sequence may prove useful in phylogenetic analyses of other deep splits
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Transcriptome Data Reveal Syndermatan Relationships and Suggest the Evolution of Endoparasitism in
2016Co-Authors: Acanthocephala Via An Epizoic Stage, Holger Herlyn, Ingo Ebersberger, Benjamin Rieger, David Rosenkranz, Er Witek, Ra R. Wey-fabrizius, David Mark B. Welch, Thomas HankelnAbstract:The taxon Syndermata comprises the biologically interesting wheel animals (‘‘Rotifera’’: Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparasitism. Here, we report the first phylogenomic analysis that includes all four higher-ranked groups of Syndermata. The analyzed data sets comprise new transcriptome data for Seison spec. (Seisonidea), Brachionus manjavacas (Monogononta), Adineta vaga (Bdelloidea), and Paratenuisentis ambiguus (Acanthocephala). Maximum likelihood and Bayesian trees for a total of 19 metazoan species were reconstructed from up to 410 functionally diverse proteins. The results unanimously place Monogononta basally within Syndermata, and Bdelloidea appear as the sister group to a clade comprising epizoic Seisonidea and endoparasitic Acanthocephala. Our results support monophyly of Syndermata, Hemirotifera (Bdelloidea + Seisonidea + Acanthocephala), and Pararotatoria (Seisonidea + Acanthocephala), rejecting monophyly of traditional Rotifera and Eurotatoria. This serves as an indication that early acanthocephalans lived epizoicall
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ral ssBioMed CentBMC Evolutionary Biology Open AcceResearch article EST based phylogenomics of Syndermata questions monophyly of
2016Co-Authors: Er Witek, Holger Herlyn, Achim Meyer, Louis Boell, Gregor Bucher, Thomas HankelnAbstract:Background: The metazoan taxon Syndermata comprising Rotifera (in the classical sense of Monogononta+Bdelloidea+Seisonidea) and Acanthocephala has raised several hypotheses connected to the phylogeny of these animal groups and the included subtaxa. While the monophyletic origin of Syndermata and Acanthocephala is well established based on morphological and molecular data, the phylogenetic position of Syndermata within Spiralia, the monophyletic origin of Monogononta, Bdelloidea, and Seisonidea and the acanthocephalan sister group are still a matter of debate. The comparison of the alternative hypotheses suggests that testing the phylogenetic validity of Eurotatoria (Monogononta+Bdelloidea) is the key to unravel the phylogenetic relations within Syndermata. The syndermatan phylogeny in turn is a prerequisite for reconstructing the evolution of the acanthocephalan endoparasitism. Results: Here we present our results from a phylogenomic approach studying i) the phylogenetic position of Syndermata within Spiralia, ii) the monophyletic origin of monogononts and bdelloids and iii) the phylogenetic relations of the latter two taxa to acanthocephalans. For this analysis we have generated EST libraries of Pomphorhynchus laevis, Echinorhynchus truttae (Acanthocephala) and Brachionus plicatili
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Phylogeny of Syndermata (syn. Rotifera): Mitochondrial gene order verifies epizoic Seisonidea as sister to endoparasitic Acanthocephala within monophyletic Hemirotifera.
Molecular Phylogenetics and Evolution, 2016Co-Authors: Malte Sielaff, David B. Mark Welch, Torsten H. Struck, Thomas Hankeln, David Rosenkranz, Hanno Schmidt, Holger HerlynAbstract:A monophyletic origin of endoparasitic thorny-headed worms (Acanthocephala) and wheel-animals (Rotifera) is widely accepted. However, the phylogeny inside the clade, be it called Syndermata or Rotifera, has lacked validation by mitochondrial (mt) data. Herein, we present the first mt genome of the key taxon Seison and report conflicting results of phylogenetic analyses: while mt sequence-based topologies showed monophyletic Lemniscea (Bdelloidea+Acanthocephala), gene order analyses supported monophyly of Pararotatoria (Seisonidea+Acanthocephala) and Hemirotifera (Bdelloidea+Pararotatoria). Sequence-based analyses obviously suffered from substitution saturation, compositional bias, and branch length heterogeneity; however, we observed no compromising effects in gene order analyses. Moreover, gene order-based topologies were robust to changes in coding (genes vs. gene pairs, two-state vs. multistate, aligned vs. non-aligned), tree reconstruction methods, and the treatment of the two monogonont mt genomes. Thus, mt gene order verifies seisonids as sister to acanthocephalans within monophyletic Hemirotifera, while deviating results of sequence-based analyses reflect artificial signal. This conclusion implies that the complex life cycle of extant acanthocephalans evolved from a free-living state, as retained by most monogononts and bdelloids, via an epizoic state with a simple life cycle, as shown by seisonids. Hence, Acanthocephala represent a rare example where ancestral transitional stages have counterparts amongst the closest relatives.
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Transcriptome Data Reveal Syndermatan Relationships and Suggest the Evolution of Endoparasitism in Acanthocephala via an Epizoic Stage
PLoS ONE, 2014Co-Authors: Alexandra R. Wey-fabrizius, Alexander Witek, Holger Herlyn, David B. Mark Welch, Ingo Ebersberger, Benjamin Rieger, David Rosenkranz, Thomas HankelnAbstract:The taxon Syndermata comprises the biologically interesting wheel animals (“Rotifera”: Bdelloidea + Monogononta + Seisonidea) and thorny-headed worms (Acanthocephala), and is central for testing superordinate phylogenetic hypotheses (Platyzoa, Gnathifera) in the metazoan tree of life. Recent analyses of syndermatan phylogeny suggested paraphyly of Eurotatoria (free-living bdelloids and monogononts) with respect to endoparasitic acanthocephalans. Data of epizoic seisonids, however, were absent, which may have affected the branching order within the syndermatan clade. Moreover, the position of Seisonidea within Syndermata should help in understanding the evolution of acanthocephalan endoparasitism. Here, we report the first phylogenomic analysis that includes all four higher-ranked groups of Syndermata. The analyzed data sets comprise new transcriptome data for Seison spec. (Seisonidea), Brachionus manjavacas (Monogononta), Adineta vaga (Bdelloidea), and Paratenuisentis ambiguus (Acanthocephala). Maximum likelihood and Bayesian trees for a total of 19 metazoan species were reconstructed from up to 410 functionally diverse proteins. The results unanimously place Monogononta basally within Syndermata, and Bdelloidea appear as the sister group to a clade comprising epizoic Seisonidea and endoparasitic Acanthocephala. Our results support monophyly of Syndermata, Hemirotifera (Bdelloidea + Seisonidea + Acanthocephala), and Pararotatoria (Seisonidea + Acanthocephala), rejecting monophyly of traditional Rotifera and Eurotatoria. This serves as an indication that early acanthocephalans lived epizoically or as ectoparasites on arthropods, before their complex lifecycle with arthropod intermediate and vertebrate definite hosts evolved.