The Experts below are selected from a list of 8691 Experts worldwide ranked by ideXlab platform
Patricia Pignet - One of the best experts on this subject based on the ideXlab platform.
-
Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences, 2012Co-Authors: Maria Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative Betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age) strongly influenced the community structure. In contrast, within the Gulf of Lion core, characterized by a homogeneous lithological structure of upper-slope environment, most detected groups were Bacteroidetes and, to a lesser extent, Betaproteobacteria. At both site, the detection of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lion, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western Mediterranean Sea sediments has left its imprint on the sedimentological context for microbial habitability, and then indirectly on structure and composition of the microbial communities during the late Quaternary.
-
Paleoenvironmental imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences Discussions, 2012Co-Authors: Maria Cristina Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:Abstract. An interdisciplinary study was conducted to evaluate the relationship between geological and paleontological parameters and the bacterial and archaeal community structure of two contrasted subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lions). Since both depositional environments were well-documented in this area, large data-sets were available and allowed to calibrate the investigated cores with several reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. Molecular-based fingerprints showed that the Ligurian Sea sediments, characterized by an heterolithic facies with numerous turbidites from a deep-sea levee, were unexpectedly dominated by Betaproteobacteria (more than 70 %), at the base of the core mainly below five meters in the sediment. Analysis of relative Betaproteobacterial abundances and turbidites frequency indicated that the microbial diversity was controlled by the important climatic changes occurring during the last 20 ka. This result was supported by statistical direct multivariate canonical correspondence analyses (CCA). In contrast, the Gulf of Lions core, characterized by a homogeneous lithology of upper-slope environment, was dominated by the Bacteroidetes group and in a lesser extent, by the Betaproteobacteria group. At both sites, the dominance of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lions, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western-Mediterranean Sea sediments has left its imprint on the structure/composition of the microbial communities during the late Quaternary.
Maria Ciobanu - One of the best experts on this subject based on the ideXlab platform.
-
Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences, 2012Co-Authors: Maria Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative Betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age) strongly influenced the community structure. In contrast, within the Gulf of Lion core, characterized by a homogeneous lithological structure of upper-slope environment, most detected groups were Bacteroidetes and, to a lesser extent, Betaproteobacteria. At both site, the detection of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lion, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western Mediterranean Sea sediments has left its imprint on the sedimentological context for microbial habitability, and then indirectly on structure and composition of the microbial communities during the late Quaternary.
Manabu Fukui - One of the best experts on this subject based on the ideXlab platform.
-
Microbial Community Analysis of Colored Snow from an Alpine Snowfield in Northern Japan Reveals the Prevalence of Betaproteobacteria with Snow Algae.
Frontiers in microbiology, 2017Co-Authors: Mia Terashima, Hisaya Kojima, Kazuhiro Umezawa, Shoichi Mori, Manabu FukuiAbstract:Psychrophilic algae blooms can be observed coloring the snow during the melt season in alpine snowfields. These algae are important primary producers on the snow surface environment, supporting the microbial community that coexists with algae, which includes heterotrophic bacteria and fungi. In this study, we analyzed the microbial community of green and red-colored snow containing algae from Mount Asahi, Japan. We found that Chloromonas spp. are the dominant algae in all samples analyzed, and Chlamydomonas is the second-most abundant genus in the red snow. For the bacterial community profile, species belonging to the subphylum Betaproteobacteria were frequently detected in both green and red snow, while members of the phylum Bacteroidetes were also prominent in red snow. Furthermore, multiple independently obtained strains of Chloromonas sp. from inoculates of red snow resulted in the growth of Betaproteobacteria with the alga and the presence of bacteria appears to support growth of the xenic algal cultures under laboratory conditions. The dominance of Betaproteobacteria in algae-containing snow in combination with the detection of Chloromonas sp. with Betaproteobacteria strains suggest that these bacteria can utilize the available carbon source in algae-rich environments and may in turn promote algal growth.
-
Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of Betaproteobacteria
Systematic and applied microbiology, 2014Co-Authors: Tomohiro Watanabe, Hisaya Kojima, Manabu FukuiAbstract:Despite detailed studies of marine sulfur-oxidizing bacteria, our knowledge concerning their counterparts in freshwater lake ecosystems is limited. Genome sequencing of the freshwater sulfur-oxidizing Betaproteobacteria Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H have been completed. Strain skB26 possessed a circular plasmid of 86.6-kbp in addition to its chromosome, and an approximate 18-kbp region of the plasmid was occupied by an arxA-like operon, encoding a new clade of anaerobic arsenite oxidase. Multilocus sequence analysis showed that strain skB26 could not be assigned to any existing order; thus a novel order, Sulfuricellales, is proposed. The genomes of strains skB26 and sk43H were examined, focusing on the composition and the phylogeny of genes involved in the oxidation of inorganic sulfur compounds. Strains skB26 and sk43H shared a common pathway, which consisted of Sqr, SoxEF, SoxXYZAB, Dsr proteins, AprBA, Sat, and SoeABC. Comparative genomics of Betaproteobacterial sulfur oxidizers showed that this pathway was also shared by the freshwater sulfur oxidizers Thiobacillus denitrificans and Sideroxydans lithotrophicus. It also revealed the presence of a conserved gene cluster, which was located immediately upstream of the Betaproteobacterial dsr operon.
Sidonie Révillon - One of the best experts on this subject based on the ideXlab platform.
-
Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences, 2012Co-Authors: Maria Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative Betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age) strongly influenced the community structure. In contrast, within the Gulf of Lion core, characterized by a homogeneous lithological structure of upper-slope environment, most detected groups were Bacteroidetes and, to a lesser extent, Betaproteobacteria. At both site, the detection of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lion, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western Mediterranean Sea sediments has left its imprint on the sedimentological context for microbial habitability, and then indirectly on structure and composition of the microbial communities during the late Quaternary.
-
Paleoenvironmental imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences Discussions, 2012Co-Authors: Maria Cristina Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:Abstract. An interdisciplinary study was conducted to evaluate the relationship between geological and paleontological parameters and the bacterial and archaeal community structure of two contrasted subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lions). Since both depositional environments were well-documented in this area, large data-sets were available and allowed to calibrate the investigated cores with several reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. Molecular-based fingerprints showed that the Ligurian Sea sediments, characterized by an heterolithic facies with numerous turbidites from a deep-sea levee, were unexpectedly dominated by Betaproteobacteria (more than 70 %), at the base of the core mainly below five meters in the sediment. Analysis of relative Betaproteobacterial abundances and turbidites frequency indicated that the microbial diversity was controlled by the important climatic changes occurring during the last 20 ka. This result was supported by statistical direct multivariate canonical correspondence analyses (CCA). In contrast, the Gulf of Lions core, characterized by a homogeneous lithology of upper-slope environment, was dominated by the Bacteroidetes group and in a lesser extent, by the Betaproteobacteria group. At both sites, the dominance of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lions, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western-Mediterranean Sea sediments has left its imprint on the structure/composition of the microbial communities during the late Quaternary.
Bernard Dennielou - One of the best experts on this subject based on the ideXlab platform.
-
Sedimentological imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences, 2012Co-Authors: Maria Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:An interdisciplinary study was conducted to evaluate the relationship between geological and paleoenvironmental parameters and the bacterial and archaeal community structure of two contrasting subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lion). Both depositional environments in this area are well-documented from paleoclimatic and paleooceanographic point of views. Available data sets allowed us to calibrate the investigated cores with reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. DNA-based fingerprints showed that the archaeal diversity was composed by one group, Miscellaneous Crenarchaeotic Group (MCG), within the Gulf of Lion sediments and of nine different lineages (dominated by MCG, South African Gold Mine Euryarchaeotal Group (SAGMEG) and Halobacteria) within the Ligurian Sea sediments. Bacterial molecular diversity at both sites revealed mostly the presence of the classes Alphaproteobacteria, Betaproteobacteria and Gammaproteobacteria within Proteobacteria phylum, and also members of Bacteroidetes phylum. The second most abundant lineages were Actinobacteria and Firmicutes at the Gulf of Lion site and Chloroflexi at the Ligurian Sea site. Various substrates and cultivation conditions allowed us to isolate 75 strains belonging to four lineages: Alpha-, Gammaproteobacteria, Firmicutes and Actinobacteria. In molecular surveys, the Betaproteobacteria group was consistently detected in the Ligurian Sea sediments, characterized by a heterolithic facies with numerous turbidites from a deep-sea levee. Analysis of relative Betaproteobacterial abundances and turbidite frequency suggested that the microbial diversity was a result of main climatic changes occurring during the last 20 ka. Statistical direct multivariate canonical correspondence analyses (CCA) showed that the availability of electron acceptors and the quality of electron donors (indicated by age) strongly influenced the community structure. In contrast, within the Gulf of Lion core, characterized by a homogeneous lithological structure of upper-slope environment, most detected groups were Bacteroidetes and, to a lesser extent, Betaproteobacteria. At both site, the detection of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lion, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western Mediterranean Sea sediments has left its imprint on the sedimentological context for microbial habitability, and then indirectly on structure and composition of the microbial communities during the late Quaternary.
-
Paleoenvironmental imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
Biogeosciences Discussions, 2012Co-Authors: Maria Cristina Ciobanu, Marina Rabineau, Laurence Droz, Sidonie Révillon, Jean-françois Ghiglione, Bernard Dennielou, Stephan J. Jorry, Jens Kallmeyer, Joel Etoubleau, Patricia PignetAbstract:Abstract. An interdisciplinary study was conducted to evaluate the relationship between geological and paleontological parameters and the bacterial and archaeal community structure of two contrasted subseafloor sites in the Western Mediterranean Sea (Ligurian Sea and Gulf of Lions). Since both depositional environments were well-documented in this area, large data-sets were available and allowed to calibrate the investigated cores with several reference and dated cores previously collected in the same area, and notably correlated to Quaternary climate variations. Molecular-based fingerprints showed that the Ligurian Sea sediments, characterized by an heterolithic facies with numerous turbidites from a deep-sea levee, were unexpectedly dominated by Betaproteobacteria (more than 70 %), at the base of the core mainly below five meters in the sediment. Analysis of relative Betaproteobacterial abundances and turbidites frequency indicated that the microbial diversity was controlled by the important climatic changes occurring during the last 20 ka. This result was supported by statistical direct multivariate canonical correspondence analyses (CCA). In contrast, the Gulf of Lions core, characterized by a homogeneous lithology of upper-slope environment, was dominated by the Bacteroidetes group and in a lesser extent, by the Betaproteobacteria group. At both sites, the dominance of Betaproteobacteria coincided with increased terrestrial inputs, as confirmed by the geochemical measurements (Si, Sr, Ti and Ca). In the Gulf of Lions, geochemical parameters were also found to drive microbial community composition. Taken together, our data suggest that the palaeoenvironmental history of erosion and deposition recorded in the Western-Mediterranean Sea sediments has left its imprint on the structure/composition of the microbial communities during the late Quaternary.