The Experts below are selected from a list of 102 Experts worldwide ranked by ideXlab platform
Yuning Sun - One of the best experts on this subject based on the ideXlab platform.
-
The DNA replication, virogenesis and infection of Canine Minute Virus in non-permissive and permissive cells.
Virus research, 2013Co-Authors: Qian Zhang, Qing Yao, Long Chen, Jianming Qiu, Yuning SunAbstract:Canine Minute Virus (CnMV), a kind of autonomous parvoVirus, is a member of genus bocaVirus in parvovirdae family. In our previous study, we constructed and obtained infectious clones of CnMV, analyzed genome characteristics, RNA transcription profile, and revealed some molecular mechanisms of cytopathic effect of target cells. The purpose of this study was to investigate DNA replication, virogenesis and infectious tropism of CnMV in non-permissive and permissive cells. We demonstrated that the genomic DNA of CnMV, besides WRD cells, could replicate significantly in some non-permissive cells (CrFK, EBtR and COS-7) following transfection with infectious clone of CnMV, pI-MVC. Moreover, by using Western blotting and immunofluorescence, we found that the NS1 protein of CnMV was obviously expressed in both 293, CrFK, EBtR and COS-7 cells transfected with pI-MVC. Meanwhile, two-rounds of reinfection on WRD cells (blind passage) of the transfected cell lysates in CrFK, EBtR and COS-7cells tranfected with pI-MVC showed that pI-MVC could produce infectious virions in these types of non-permissive cells. Furthermore, it is confirmed that CnMV only infected WRD cells (permissive cells for CnMV), could not infect any non-permissive cells including CrFK, EBtR, COS-7, HK293, A549 and A9 cells. Taken together, for the first time, we have demonstrated that bocaVirus CnMV DNA could replicate and form infectious progeny Virus in some non-permissive cells. And what is more, unlike other parvoViruses, CnMV did not infect some non-permissive cells, although the DNA replication of CnMV occurred in these cells.
Colin R Parrish - One of the best experts on this subject based on the ideXlab platform.
-
the Canine Minute Virus Minute Virus of Canines is a distinct parvoVirus that is most similar to bovine parvoVirus
Virology, 2002Co-Authors: Daniel Schwartz, Bryan Green, Leland E Carmichael, Colin R ParrishAbstract:We characterized the genome and proteins of the Canine Minute Virus (the Minute Virus of Canines (MVC)). The genome sequence showed MVC to be an autonomous parvoVirus encoding a large nonstructural protein 1 gene, a smaller nonstructural protein, and overlapping VP1 and VP2 protein genes. The Virus was most closely related to bovine parvoVirus (BPV), with which it was 43% identical at the DNA sequence level, while the NS1 and VP1 proteins were 33.6 and 41.4% identical to those of BPV, respectively. Spliced messages of the NS1 gene transcripts were detected by RT-PCR. VP1 and VP2 proteins were detected in purified capsids, as were modified versions of each protein, and VP3 was also found in full capsids.
-
rapid communication the Canine Minute Virus Minute Virus of Canines is a distinct parvoVirus that is most similar to bovine parvoVirus
2002Co-Authors: Daniel Schwartz, Bryan Green, Leland E Carmichael, Colin R ParrishAbstract:We characterized the genome and proteins of the Canine Minute Virus (the Minute Virus of Canines (MVC)). The genome sequence showed MVC to be an autonomous parvoVirus encoding a large nonstructural protein 1 gene, a smaller nonstructural protein, and overlapping VP1 and VP2 protein genes. The Virus was most closely related to bovine parvoVirus (BPV), with which it was 43% identical at the DNA sequence level, while the NS1 and VP1 proteins were 33.6 and 41.4% identical to those of BPV, respectively. Spliced messages of the NS1 gene transcripts were detected by RT-PCR. VP1 and VP2 proteins were detected in purified capsids, as were modified versions of each protein, and VP3 was also found in full capsids.
Qian Zhang - One of the best experts on this subject based on the ideXlab platform.
-
The DNA replication, virogenesis and infection of Canine Minute Virus in non-permissive and permissive cells.
Virus research, 2013Co-Authors: Qian Zhang, Qing Yao, Long Chen, Jianming Qiu, Yuning SunAbstract:Canine Minute Virus (CnMV), a kind of autonomous parvoVirus, is a member of genus bocaVirus in parvovirdae family. In our previous study, we constructed and obtained infectious clones of CnMV, analyzed genome characteristics, RNA transcription profile, and revealed some molecular mechanisms of cytopathic effect of target cells. The purpose of this study was to investigate DNA replication, virogenesis and infectious tropism of CnMV in non-permissive and permissive cells. We demonstrated that the genomic DNA of CnMV, besides WRD cells, could replicate significantly in some non-permissive cells (CrFK, EBtR and COS-7) following transfection with infectious clone of CnMV, pI-MVC. Moreover, by using Western blotting and immunofluorescence, we found that the NS1 protein of CnMV was obviously expressed in both 293, CrFK, EBtR and COS-7 cells transfected with pI-MVC. Meanwhile, two-rounds of reinfection on WRD cells (blind passage) of the transfected cell lysates in CrFK, EBtR and COS-7cells tranfected with pI-MVC showed that pI-MVC could produce infectious virions in these types of non-permissive cells. Furthermore, it is confirmed that CnMV only infected WRD cells (permissive cells for CnMV), could not infect any non-permissive cells including CrFK, EBtR, COS-7, HK293, A549 and A9 cells. Taken together, for the first time, we have demonstrated that bocaVirus CnMV DNA could replicate and form infectious progeny Virus in some non-permissive cells. And what is more, unlike other parvoViruses, CnMV did not infect some non-permissive cells, although the DNA replication of CnMV occurred in these cells.
Di Hardie - One of the best experts on this subject based on the ideXlab platform.
-
human bocaVirus in hospitalized children south africa
Emerging Infectious Diseases, 2006Co-Authors: Heidi Smuts, Di HardieAbstract:To the Editor: In recent years, several novel respiratory Viruses have been identified. These include human metapneumoVirus (HMPV) (1), severe acute respiratory syndrome–associated coronaVirus (2), human coronaVirus (HCoV) NL63 (3,4), HCoV HKU1 (5), and, most recently, human bocaVirus (HBoV) (6). The latter belongs to the Parvoviridae family and is most closely related to bovine parvoVirus and Canine Minute Virus (CnMV), which are members of the genus BocaVirus (6). ParvoVirus B19 and HBoV are the only 2 parvoViruses known to be pathogenic to humans, but the relevance of HBoV infection in the clinical setting is not known. In this retrospective study, 341 nasopharyngeal and bronchoalveolar lavage samples were taken from children (age 2 days–12 years) hospitalized with respiratory tract infections in 2004 in the Red Cross War Memorial Children's Hospital, Cape Town, South Africa. Samples were originally screened by using an indirect immunofluorescence assay (Light Diagnostics, Chemicon International, Temecula, CA, USA) for common respiratory Viruses, including respiratory syncytial Virus; influenza Virus A and B; parainfluenza Viruses 1, 2, and 3; adenoVirus; and cytomegaloVirus. Subsequently, HMPV and HCoV NL63 were detected by using reverse transcription–PCR (1,3). Samples were also screened for HBoV DNA. DNA was extracted by using the QIAamp DNA blood mini kit according to the manufacturer's instructions (Qiagen Inc., Valencia, CA, USA). PCR amplification of a region of the NP-1 gene and the 3´ portion of the VP1/2 capsid gene of HBoV was performed. Briefly, 10 μL DNA was added to a 50-μL PCR mix containing 2 IU Supertherm polymerase (JMR Holdings, Kent, UK), 1.5 mmol/L MgCl2, 200 μmol/L each dNTP, and 0.2 μmol/L primers NP-1 s1 (5´-TAACTGCTCCAGCAAGTCCTCCA) and NP-1 as1 (5´-GGAAGCTCTGTGTTGACTGAAT). To improve sensitivity, a second seminested reaction with 2.5 μL outer product and NP-1 as1 primer and NP-1 s2 (5´-CTCACCTGCGAGCTCTGTAAGTA) primer was performed at an annealing temperature of 55°C. Negative controls were used, and appropriate measures were taken to prevent contamination (7). Samples with an NP-1–specific PCR product of 368 bp were confirmed by amplifying a 980-bp product of the VP1/2 capsid gene in a similar seminested PCR amplification protocol (primers VP s1 5´-GCACTTCTGTATCAGATGCCTT, VP as1 5´-CGTGGTATGTAGGCGTGTAG, and VP s2 5´-CTTAGAACTGGTGAGAGCACTG). A selection of the inner VP1/2 amplicons obtained from samples taken over the year were sequenced directly and aligned in ClustalX, and a phylogenetic tree was constructed with the Kimura 2-parameter neighbor-joining method with 1,000 bootstrap resamplings. Comparative sequences were obtained from GenBank and included HBoV isolate st1 ({"type":"entrez-nucleotide","attrs":{"text":"DQ000495","term_id":"66356128","term_text":"DQ000495"}}DQ000495), HBoV isolate st2 ({"type":"entrez-nucleotide","attrs":{"text":"DQ000496","term_id":"66356133","term_text":"DQ000496"}}DQ000496), and a CnMV isolate ({"type":"entrez-nucleotide","attrs":{"text":"NC_004442","term_id":"27151463","term_text":"NC_004442"}}NC_004442). Nucleotide sequences from this study were deposited into GenBank ({"type":"entrez-nucleotide-range","attrs":{"text":"DQ317539-DQ317561","start_term":"DQ317539","end_term":"DQ317561","start_term_id":"83835448","end_term_id":"83835492"}}DQ317539-DQ317561). HBoV DNA was detected in 38 (11%) samples from 35 children, all <2 years of age. Infections occurred throughout the year, although more positive results were found in the autumn/winter season from April to August (63%) than during the rest of the year (37%). A diagnosis of pneumonia or lower respiratory tract infection was made for 30 (86%) children. Thirteen (37%) HBoV-positive children required admission to the intensive care unit. Comorbid conditions were present in 22 children: cystic fibrosis (1), spinal muscular atrophy type 1 (4), Down syndrome (4), cardiac abnormalities (5), and HIV infection (8). Co-infection with a range of viral and bacterial organisms was a common feature in HBoV-positive children and was found in 14 (37%) samples. These organisms included cytomegaloVirus (4), respiratory syncytial Virus (2), adenoVirus (1), HCoV NL63 (1), parainfluenza 3 (1), Staphylococcus aureus (1), Streptococcus pneumoniae (1), Klebsiella pneumoniae (1), and Pneumocystis jirovecii (2). However, in the remaining 24 (63%) samples, no other infectious agent was identified. HBoV was detected in serial samples from 2 children during a 2-day (V04/2591 and V04/2613) and 7-day (V04/2599 and V04/2631) period. In both, sequences were identical and clustered within the proposed subgroup B. In a third child, HBoV sequences were detected in 2 samples taken 2 months apart; in these samples, the isolates were different (V04/1159 and V04/2062) (Figure). Figure Phylogenetic analysis of a 980-bp region of the human bocaVirus (HBoV) VP1/2 capsid gene from South African children with respiratory tract disease. The tree was constructed by using the neighbor-joining method with 1,000 bootstrap resamplings. All nucleotide ... Phylogenetic analysis of the 3´ region of the VP1/2 capsid gene (Figure) showed that the Cape Town strains of HBoV were most closely aligned with the HBoV st2 prototype strain. The nucleotide sequence homology was 98% with 1 amino acid change, N474S. The HBoV st2 branch could be separated into 2 lineages, A and B, with a 3-nucleotide change at positions 4615 (A/G), 4756 (A/C), and 4888 (G/A) on the basis of the numbering of the HBoV st2 sequence. These results suggest that HBoV infection occurs predominantly during the winter season and that children <2 years of age are most at risk. The study by Sloots et al. (8) also found HBoV infections mainly during the winter months (61%) in children <2 years. Although co-infections were found, the proportion (63%) of children in whom only HBoV was detected was substantial. These findings suggest that HBoV may play a role in respiratory tract infections in young children who require hospitalization.
Ian W Lipkin - One of the best experts on this subject based on the ideXlab platform.
-
identification and characterization of a new bocaVirus species in gorillas
PLOS ONE, 2010Co-Authors: Amit Kapoor, Natasha Mehta, Frank Esper, Mateja Poljsakprijatelj, Natasha Qaisar, Phenix Lan Quan, Ian W LipkinAbstract:A novel parvoVirus, provisionally named Gorilla BocaVirus species 1 (GBoV1), was identified in four stool samples from Western gorillas (Gorilla gorilla) with acute enteritis. The complete genomic sequence of the new parvoVirus revealed three open reading frames (ORFs) with an organization similar to that of known bocaViruses. Phylogenetic analysis using complete capsid and non structural (NS) gene sequence suggested that the new parvoVirus is most closely related to human bocaViruses (HBoV). However, the NS ORF is more similar in length to the NS ORF found in Canine Minute Virus and bovine parvoVirus than in HBoV. Comparative genetic analysis using GBoV and HBoV genomes enabled characterization of unique splice donor and acceptor sites that appear to be highly conserved among all four HBoV species, and provided evidence for expression of two different NS proteins in all primate bocaViruses. GBoV is the first non-human primate bocaVirus identified and provides new insights into the genetic diversity and evolution of this highly prevalent and recently discovered group of parvoViruses.
-
Identification and characterization of a new bocaVirus species in gorillas. PLoS One 5: e11948
2010Co-Authors: Amit Kapoor, Natasha Mehta, Frank Esper, Phenix Lan Quan, Mateja Poljsak-prijatelj, Eric Delwart, Ian W LipkinAbstract:A novel parvoVirus, provisionally named Gorilla BocaVirus species 1 (GBoV1), was identified in four stool samples from Western gorillas (Gorilla gorilla) with acute enteritis. The complete genomic sequence of the new parvoVirus revealed three open reading frames (ORFs) with an organization similar to that of known bocaViruses. Phylogenetic analysis using complete capsid and non structural (NS) gene sequence suggested that the new parvoVirus is most closely related to human bocaViruses (HBoV). However, the NS ORF is more similar in length to the NS ORF found in Canine Minute Virus and bovine parvoVirus than in HBoV. Comparative genetic analysis using GBoV and HBoV genomes enabled characterization of unique splice donor and acceptor sites that appear to be highly conserved among all four HBoV species, and provided evidence for expression of two different NS proteins in all primate bocaViruses. GBoV is the first non-human primate bocaVirus identified and provides new insights into the genetic diversity and evolution of this highly prevalent and recentl
