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Didier Raoult - One of the best experts on this subject based on the ideXlab platform.
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Fenollaria timonensis sp. nov., A New Bacterium Isolated from Healthy Human Fresh Stool
Current Microbiology, 2020Co-Authors: Cheikh Ibrahima Lo, Mamadou Lamine Tall, Mariema Sarr, Pierre-edouard Fournier, Aurelia Caputo, El Hadji Amadou Niang, Guillaume Durand, Didier Raoult, Florence FenollarAbstract:The strain Marseille-P2133 is the type strain of a new bacterial species of the order Clostridiales that was isolated from a stool sample from a healthy volunteer. It is a strictly anaerobic Gram-negative coccobacillus. MALDI-TOF MS did not provide any identification. Strain Marseille-P2133^T exhibits 97.4% similarity levels with the Fenollaria massiliensis strain 9401234^T (NR_133038), a phylogenetically related species with standing in nomenclature. On the basis of these data, we propose the creation of Fenollaria timonensis sp. nov.
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Massilicoli timonensis. sp. nov., a new bacterium isolated from the human microbiota
New microbes and new infections, 2019Co-Authors: S. Ndongo, Mamadou Lamine Tall, Pierre-edouard Fournier, Didier Raoult, Issa Isaac Ngom, Anthony Levasseur, Saber KhelaifiaAbstract:Abstract Massilicoli timonensis sp. nov., strain Marseille-P3755T (= CSUR P3755 = DSM 103513) is a new bacterial species from the phylum Firmicutes and the family Clostridiales which was isolated from the human gut microbiota.
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“Ihubacter massiliensis”: a new bacterium isolated from the human gut
New microbes and new infections, 2016Co-Authors: S. Ndongo, Pierre-edouard Fournier, Didier Raoult, Jean-christophe Lagier, Saber KhelaifiaAbstract:We report here the main characteristics of "Ihubacter massiliensis," strain Marseille-P2843(T) (CSUR P2843), a new genus of the Clostridiales family isolated from a stool sample from a healthy 29-year-old woman.
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"Emergencia timonensis," a new bacterium isolated from the stool of a healthy patient.
New microbes and new infections, 2016Co-Authors: Simon Bessis, Pierre-edouard Fournier, S. Ndongo, Jean-christophe Lagier, Didier RaoultAbstract:We present the essential characteristics of “Emergencia timonensis” strain SN18 (= CSUR P2260), a new member of the order Clostridiales that was isolated from the stool of healthy patient.
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Drancourtella massiliensis gen. nov., sp. nov. isolated from fresh healthy human faecal sample from South France
New microbes and new infections, 2016Co-Authors: Guillaume André Durand, Pierre-edouard Fournier, Jean-christophe Lagier, Saber Khelaifia, Nicholas Armstrong, C. Robert, J. Rathored, Didier RaoultAbstract:Strain GD1T gen. nov., sp. nov., is the type strain of the newly proposed genus and species Drancourtella massiliensis, belonging to the Clostridiales order. This strain, isolated from the stool of a healthy person, is a Gram-positive rod, oxygen intolerant and nonmotile, with spore-forming activity. The features of this organism and its genome sequence are described. The draft genome is 3 057 334 bp long with 45.24% G + C content; it contains 2861 protein-coding genes and 64 RNA genes.
Saber Khelaifia - One of the best experts on this subject based on the ideXlab platform.
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Massilicoli timonensis. sp. nov., a new bacterium isolated from the human microbiota
New microbes and new infections, 2019Co-Authors: S. Ndongo, Mamadou Lamine Tall, Pierre-edouard Fournier, Didier Raoult, Issa Isaac Ngom, Anthony Levasseur, Saber KhelaifiaAbstract:Abstract Massilicoli timonensis sp. nov., strain Marseille-P3755T (= CSUR P3755 = DSM 103513) is a new bacterial species from the phylum Firmicutes and the family Clostridiales which was isolated from the human gut microbiota.
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“Ihubacter massiliensis”: a new bacterium isolated from the human gut
New microbes and new infections, 2016Co-Authors: S. Ndongo, Pierre-edouard Fournier, Didier Raoult, Jean-christophe Lagier, Saber KhelaifiaAbstract:We report here the main characteristics of "Ihubacter massiliensis," strain Marseille-P2843(T) (CSUR P2843), a new genus of the Clostridiales family isolated from a stool sample from a healthy 29-year-old woman.
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Drancourtella massiliensis gen. nov., sp. nov. isolated from fresh healthy human faecal sample from South France
New microbes and new infections, 2016Co-Authors: Guillaume André Durand, Pierre-edouard Fournier, Jean-christophe Lagier, Saber Khelaifia, Nicholas Armstrong, C. Robert, J. Rathored, Didier RaoultAbstract:Strain GD1T gen. nov., sp. nov., is the type strain of the newly proposed genus and species Drancourtella massiliensis, belonging to the Clostridiales order. This strain, isolated from the stool of a healthy person, is a Gram-positive rod, oxygen intolerant and nonmotile, with spore-forming activity. The features of this organism and its genome sequence are described. The draft genome is 3 057 334 bp long with 45.24% G + C content; it contains 2861 protein-coding genes and 64 RNA genes.
Pierre-edouard Fournier - One of the best experts on this subject based on the ideXlab platform.
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Fenollaria timonensis sp. nov., A New Bacterium Isolated from Healthy Human Fresh Stool
Current Microbiology, 2020Co-Authors: Cheikh Ibrahima Lo, Mamadou Lamine Tall, Mariema Sarr, Pierre-edouard Fournier, Aurelia Caputo, El Hadji Amadou Niang, Guillaume Durand, Didier Raoult, Florence FenollarAbstract:The strain Marseille-P2133 is the type strain of a new bacterial species of the order Clostridiales that was isolated from a stool sample from a healthy volunteer. It is a strictly anaerobic Gram-negative coccobacillus. MALDI-TOF MS did not provide any identification. Strain Marseille-P2133^T exhibits 97.4% similarity levels with the Fenollaria massiliensis strain 9401234^T (NR_133038), a phylogenetically related species with standing in nomenclature. On the basis of these data, we propose the creation of Fenollaria timonensis sp. nov.
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Massilicoli timonensis. sp. nov., a new bacterium isolated from the human microbiota
New microbes and new infections, 2019Co-Authors: S. Ndongo, Mamadou Lamine Tall, Pierre-edouard Fournier, Didier Raoult, Issa Isaac Ngom, Anthony Levasseur, Saber KhelaifiaAbstract:Abstract Massilicoli timonensis sp. nov., strain Marseille-P3755T (= CSUR P3755 = DSM 103513) is a new bacterial species from the phylum Firmicutes and the family Clostridiales which was isolated from the human gut microbiota.
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“Ihubacter massiliensis”: a new bacterium isolated from the human gut
New microbes and new infections, 2016Co-Authors: S. Ndongo, Pierre-edouard Fournier, Didier Raoult, Jean-christophe Lagier, Saber KhelaifiaAbstract:We report here the main characteristics of "Ihubacter massiliensis," strain Marseille-P2843(T) (CSUR P2843), a new genus of the Clostridiales family isolated from a stool sample from a healthy 29-year-old woman.
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"Emergencia timonensis," a new bacterium isolated from the stool of a healthy patient.
New microbes and new infections, 2016Co-Authors: Simon Bessis, Pierre-edouard Fournier, S. Ndongo, Jean-christophe Lagier, Didier RaoultAbstract:We present the essential characteristics of “Emergencia timonensis” strain SN18 (= CSUR P2260), a new member of the order Clostridiales that was isolated from the stool of healthy patient.
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Drancourtella massiliensis gen. nov., sp. nov. isolated from fresh healthy human faecal sample from South France
New microbes and new infections, 2016Co-Authors: Guillaume André Durand, Pierre-edouard Fournier, Jean-christophe Lagier, Saber Khelaifia, Nicholas Armstrong, C. Robert, J. Rathored, Didier RaoultAbstract:Strain GD1T gen. nov., sp. nov., is the type strain of the newly proposed genus and species Drancourtella massiliensis, belonging to the Clostridiales order. This strain, isolated from the stool of a healthy person, is a Gram-positive rod, oxygen intolerant and nonmotile, with spore-forming activity. The features of this organism and its genome sequence are described. The draft genome is 3 057 334 bp long with 45.24% G + C content; it contains 2861 protein-coding genes and 64 RNA genes.
Patrick Eichenberger - One of the best experts on this subject based on the ideXlab platform.
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The spore coat
Microbiology spectrum, 2016Co-Authors: Adam Driks, Patrick EichenbergerAbstract:Spores of Clostridiales and Bacillales are encased in a complex series of concentric shells that provide protection, facilitate germination, and mediate interactions with the environment. Analysis of diverse spore-forming species by thin-section transmission electron microscopy reveals that the number and morphology of these encasing shells vary greatly. In some species, they appear to be composed of a small number of discrete layers. In other species, they can comprise multiple, morphologically complex layers. In addition, spore surfaces can possess elaborate appendages. For all their variability, there is a consistent architecture to the layers encasing the spore. A hallmark of all Clostridiales and Bacillales spores is the cortex, a layer made of peptidoglycan. In close association with the cortex, all species examined possess, at a minimum, a series of proteinaceous layers, called the coat. In some species, including Bacillus subtilis, only the coat is present. In other species, including Bacillus anthracis, an additional layer, called the exosporium, surrounds the coat. Our goals here are to review the present understanding of the structure, composition, assembly, and functions of the coat, primarily in the model organism B. subtilis, but also in the small but growing number of other spore-forming species where new data are showing that there is much to be learned beyond the relatively well-developed basis of knowledge in B. subtilis. To help summarize this large field and define future directions for research, we will focus on key findings in recent years.
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The Bacterial Spore - The Spore Coat.
Microbiology spectrum, 2016Co-Authors: Adam Driks, Patrick EichenbergerAbstract:Spores of Clostridiales and Bacillales are encased in a complex series of concentric shells that provide protection, facilitate germination, and mediate interactions with the environment. Analysis of diverse spore-forming species by thin-section transmission electron microscopy reveals that the number and morphology of these encasing shells vary greatly. In some species, they appear to be composed of a small number of discrete layers. In other species, they can comprise multiple, morphologically complex layers. In addition, spore surfaces can possess elaborate appendages. For all their variability, there is a consistent architecture to the layers encasing the spore. A hallmark of all Clostridiales and Bacillales spores is the cortex, a layer made of peptidoglycan. In close association with the cortex, all species examined possess, at a minimum, a series of proteinaceous layers, called the coat. In some species, including Bacillus subtilis, only the coat is present. In other species, including Bacillus anthracis, an additional layer, called the exosporium, surrounds the coat. Our goals here are to review the present understanding of the structure, composition, assembly, and functions of the coat, primarily in the model organism B. subtilis, but also in the small but growing number of other spore-forming species where new data are showing that there is much to be learned beyond the relatively well-developed basis of knowledge in B. subtilis. To help summarize this large field and define future directions for research, we will focus on key findings in recent years.
Peter Setlow - One of the best experts on this subject based on the ideXlab platform.
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lack of efficient killing of purified dormant spores of bacillales and Clostridiales species by glycerol monolaurate in a non aqueous gel
Letters in Applied Microbiology, 2020Co-Authors: Joshua Green, George Korza, Maria Rocha Granados, Blesing Zenick, Patrick M. Schlievert, Wendy M.k. Mok, Peter SetlowAbstract:Inactivation of Bacillales and Clostridiales spores is of interest, since some cause food spoilage and human diseases. A recent publication (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of Bacillus subtilis, Bacillus cereus and Clostridioides difficile, and Bacillus anthracis spores to a lesser extent. We now show that (i) the B. subtilis spores prepared as in the prior work were impure; (ii) if spore viability was measured by diluting spores 1/10 in GMLg, serially diluting incubations 10-fold and spotting aliquots on recovery plates, there was no colony formation from the 1/10 to 1/1000 dilutions due to GMLg carryover, although thorough ethanol washes of incubated spores eliminated this problem and (iii) GMLg did not kill highly purified spores of B. subtilis, B. cereus, Bacillus megaterium and C. difficile in 3-20 h in the conditions used in the recent publication. GMLg also gave no killing of crude B. subtilis spores prepared as in the recent publication in 5 h but gave ~1·5 log killing at 24 h. Thus, GMLg does not appear to be an effective sporicide, although the gel likely inhibits spore germination and could kill spores somewhat upon long incubations. SIGNIFICANCE AND IMPACT OF THE STUDY: Given potential deleterious effects of spores of Bacillales and Clostridiales, there is an ongoing interest in new ways of spore killing. A recent paper (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of many species. We now find that (i) the Bacillus subtilis spores prepared as in the previous report were impure and (ii) GMLg gave no killing of purified spores of Bacillales and Clostridiales species in ≤5 h under the published conditions. Thus, GMLg is not an effective sporicide, though may prevent spore germination or kill germinated spores.
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Lack of efficient killing of purified dormant spores of Bacillales and Clostridiales species by glycerol monolaurate in a non‐aqueous gel
Letters in applied microbiology, 2020Co-Authors: Joshua Green, George Korza, Maria Rocha Granados, Blesing Zenick, Patrick M. Schlievert, Wendy M.k. Mok, Peter SetlowAbstract:Inactivation of Bacillales and Clostridiales spores is of interest, since some cause food spoilage and human diseases. A recent publication (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of Bacillus subtilis, Bacillus cereus and Clostridioides difficile, and Bacillus anthracis spores to a lesser extent. We now show that (i) the B. subtilis spores prepared as in the prior work were impure; (ii) if spore viability was measured by diluting spores 1/10 in GMLg, serially diluting incubations 10-fold and spotting aliquots on recovery plates, there was no colony formation from the 1/10 to 1/1000 dilutions due to GMLg carryover, although thorough ethanol washes of incubated spores eliminated this problem and (iii) GMLg did not kill highly purified spores of B. subtilis, B. cereus, Bacillus megaterium and C. difficile in 3-20 h in the conditions used in the recent publication. GMLg also gave no killing of crude B. subtilis spores prepared as in the recent publication in 5 h but gave ~1·5 log killing at 24 h. Thus, GMLg does not appear to be an effective sporicide, although the gel likely inhibits spore germination and could kill spores somewhat upon long incubations. SIGNIFICANCE AND IMPACT OF THE STUDY: Given potential deleterious effects of spores of Bacillales and Clostridiales, there is an ongoing interest in new ways of spore killing. A recent paper (mSphere 3: e00597-1, 2018) reported that glycerol monolaurate (GML) in a non-aqueous gel (GMLg) effectively killed spores of many species. We now find that (i) the Bacillus subtilis spores prepared as in the previous report were impure and (ii) GMLg gave no killing of purified spores of Bacillales and Clostridiales species in ≤5 h under the published conditions. Thus, GMLg is not an effective sporicide, though may prevent spore germination or kill germinated spores.
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Observations on research with spores of Bacillales and Clostridiales species.
Journal of applied microbiology, 2018Co-Authors: Peter SetlowAbstract:The purpose of this article is to highlight some areas of research with spores of bacteria of Firmicute species in which the methodology too commonly used is not optimal and generates misleading results. As a consequence, conclusions drawn from data obtained are often flawed or not appropriate. Topics covered in the article include the following: (i) the importance of using well-purified bacterial spores in studies on spore resistance, composition, killing, disinfection and germination; (ii) methods for obtaining good purification of spores of various species; (iii) appropriate experimental approaches to determine mechanisms of spore resistance and spore killing by a variety of agents, as well as known mechanisms of spore resistance and killing; (iv) common errors made in drawing conclusions about spore killing by various agents, including failure to neutralize chemical agents before plating for viable spore enumeration, and equating correlations between changes in spore properties accompanying spore killing with causation. It is hoped that a consideration of these topics will improve the quality of spore research going forward.
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Germination of Spores of the Orders Bacillales and Clostridiales.
Annual review of microbiology, 2017Co-Authors: Peter Setlow, Shiwei WangAbstract:Dormant Bacillales and Clostridiales spores begin to grow when small molecules (germinants) trigger germination, potentially leading to food spoilage or disease. Germination-specific proteins sense germinants, transport small molecules, and hydrolyze specific bonds in cortex peptidoglycan and specific proteins. Major events in germination include (a) germinant sensing; (b) commitment to germinate; (c) release of spores’ depot of dipicolinic acid (DPA); (d) hydrolysis of spores’ peptidoglycan cortex; and (e) spore core swelling and water uptake, cell wall peptidoglycan remodeling, and restoration of core protein and inner spore membrane lipid mobility. Germination is similar between Bacillales and Clostridiales, but some species differ in how germinants are sensed and how cortex hydrolysis and DPA release are triggered. Despite detailed knowledge of the proteins and signal transduction pathways involved in germination, precisely what some germination proteins do and how they do it remain unclear.
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Bacterial Stress Responses - Resistance of Bacterial Spores
Bacterial Stress Responses Second Edition, 2014Co-Authors: Peter SetlowAbstract:This chapter discusses the resistance of spores of Bacillales and Clostridiales, with focus Bacillus species, in which spore resistance mechanisms are best understood, with most specific knowledge from work with B. subtilis spores. The spore coat plays a major role in spore resistance. First, some protective enzymes that are loosely associated with or integral components of the coat can inactivate toxic chemicals; two such enzymes are superoxide dismutase and catalase. Second, coat protein appears to act like ‘’reactive armor’’ detoxifying damaging chemicals before they can react with components in the spore’s interior. Spore structure is important in spore resistance and because spore structure is different than that of growing cells, the major features of spore structure and how these features contribute to spore resistance is outlined in the chapter. Spores of Bacillales and Clostridiales are more resistant than growing cells to stress factors and studies have attempted to correlate differences in spore resistance with differences in spore structural or biochemical properties. It is reasonable to ask whether conclusions from work on one or two species are applicable to spores of other species, available evidence indicates that basic mechanisms of spore resistance are similar in spores of all Bacillales and Clostridiales. Some resistance of core proteins to damage, in particular to chemicals, is likely because of mechanisms that also protect DNA, including detoxification of reactive chemicals by enzymes in the coat/exosporium, inactivation of toxic chemicals by reaction with coat components, and the low permeability of the inner membrane.