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Alla Lapidus - One of the best experts on this subject based on the ideXlab platform.
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Complete genome sequence of the Antarctic Halorubrum lacusprofundi Type Strain ACAM 34
Standards in genomic sciences, 2016Co-Authors: Iain Anderson, Eileen Dalin, Alla Lapidus, Hope Tice, Susan Lucas, Alex Copeland, David Bruce, Priya Dassarma, Tijana Glavina Del Rio, Lynne GoodwinAbstract:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The Type Strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi Type Strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.
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genome sequence of phaeobacter caeruleus Type Strain dsm 24564 t a surface associated member of the marine roseobacter clade
Standards in Genomic Sciences, 2013Co-Authors: Paul G Beyersmann, Olga Chertkov, Alla Lapidus, Natalia Ivanova, Amrita Pati, Amy Chen, Lynne Goodwin, Jorn Petersen, Anne FiebigAbstract:In 2009 Phaeobacter caeruleus was described as a novel species affiliated with the marine Roseobacter clade, which, in turn, belongs to the class Alphaproteobacteria. The genus Phaeobacter is well known for members that produce various secondary metabolites. Here we report of putative quorum sensing systems, based on the finding of six N-acyl-homoserine lactone synthetases, and show that the blue color of P. caeruleus is probably due to the production of the secondary metabolite indigoidine. Therefore, P. caeruleus might have inhibitory effects on other bacteria. In this study the genome of the Type Strain DSM 24564T was sequenced, annotated and characterized. The 5,344,419 bp long genome with its seven plasmids contains 5,227 protein-coding genes (3,904 with a predicted function) and 108 RNA genes.
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DOI:10.4056/sigs.30527 Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 Type Strain F1
2013Co-Authors: Iain J. Anderson, Eileen Dalin, Alla Lapidus, Susan Lucas, Kerrie Barry, Alex Copel, Tijana Glavina, Del Rio, Hui Sun, Miriam LAbstract:Staphylothermus marinus Fiala and Stetter 1986 belongs to the order Desulfurococcales within the archaeal phylum Crenarchaeota. S. marinus is a hyperthermophilic, sulfur-dependent, anaerobic heterotroph. Strain F1 was isolated from geothermally heated sediments at Vulcano, Italy, but S. marinus has also been isolated from a hydrothermal vent on the East Pacific Rise. We report the complete genome of S. marinus Strain F1, the Type Strain of the species. This is the fifth reported complete genome sequence from the order Desulfurococcales
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DOI:10.4056/sigs.48727 Complete genome sequence of Streptobacillus moniliformis Type Strain (9901 T)
2013Co-Authors: Matt Nolan, Sabine Gronow, Alla Lapidus, Susan Lucas, Natalia Ivanova, Feng Chen, Alex Copel, Tijana Glavina, Del Rio, Hope TiceAbstract:Streptobacillus moniliformis Levaditi et al. 1925 is the Type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae ' within the phylum Fusobacteria. The 'Leptotrichiaceae ' have not been well characterized, genomically or taxonomically. S. moniliformis, is a Gram-negative, nonmotile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901 T, the Type Strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriale
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complete genome sequence of the bile resistant pigment producing anaerobe alistipes finegoldii Type Strain ahn2437 t
Standards in Genomic Sciences, 2013Co-Authors: Konstantinos Mavromatis, Nancy Hammon, Alla Lapidus, Christine Munk, Erko Stackebrandt, Shweta DeshpandeAbstract:Alistipes finegoldii Rautio et al. 2003 is one of five species of Alistipes with a validly published name: family Rikenellaceae, order Bacteroidetes, class Bacteroidia, phylum Bacteroidetes. This rod-shaped and strictly anaerobic organism has been isolated mostly from human tissues. Here we describe the features of the Type Strain of this species, together with the complete genome sequence, and annotation. A. finegoldii is the first member of the genus Alistipes for which the complete genome sequence of its Type Strain is now available. The 3,734,239 bp long single replicon genome with its 3,302 protein-coding and 68 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Hope Tice - One of the best experts on this subject based on the ideXlab platform.
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Complete genome sequence of the Antarctic Halorubrum lacusprofundi Type Strain ACAM 34
Standards in genomic sciences, 2016Co-Authors: Iain Anderson, Eileen Dalin, Alla Lapidus, Hope Tice, Susan Lucas, Alex Copeland, David Bruce, Priya Dassarma, Tijana Glavina Del Rio, Lynne GoodwinAbstract:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The Type Strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi Type Strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.
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DOI:10.4056/sigs.48727 Complete genome sequence of Streptobacillus moniliformis Type Strain (9901 T)
2013Co-Authors: Matt Nolan, Sabine Gronow, Alla Lapidus, Susan Lucas, Natalia Ivanova, Feng Chen, Alex Copel, Tijana Glavina, Del Rio, Hope TiceAbstract:Streptobacillus moniliformis Levaditi et al. 1925 is the Type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae ' within the phylum Fusobacteria. The 'Leptotrichiaceae ' have not been well characterized, genomically or taxonomically. S. moniliformis, is a Gram-negative, nonmotile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901 T, the Type Strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriale
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non contiguous finished genome sequence of bacteroides coprosuis Type Strain pc139 t
Standards in Genomic Sciences, 2011Co-Authors: Brittany Held, Sabine Gronow, Susan Lucas, Matt Nolan, Miriam Land, Tijana Glavina Del Rio, Birte Abt, Hope TiceAbstract:Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of animal guts against pathogenic microorganisms, and as contributors to the degradation of complex molecules such as polysaccharides. B. coprosuis itself was isolated from a manure storage pit of a swine facility, but has not yet been found in an animal host. The species is of interest solely because of its isolated phylogenetic location. The genome of B. coprosuis is already the 5th sequenced Type Strain genome from the genus Bacteroides. The 2,991,798 bp long genome with its 2,461 protein-coding and 78 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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Complete genome sequence of Arcanobacterium haemolyticum Type Strain (11018^T)
Standards in Genomic Sciences, 2010Co-Authors: Montri Yasawong, Alla Lapidus, Hope Tice, Jan-fang Cheng, Susan Lucas, Matt Nolan, Hazuki Teshima, David Bruce, Tijana Glavina Del Rio, Chris DetterAbstract:Arcanobacterium haemolyticum (ex MacLean et al. 1946) Collins et al. 1983 is the Type species of the genus Arcanobacterium , which belongs to the family Actinomycetaceae . The Strain is of interest because it is an obligate parasite of the pharynx of humans and farm animal; occasionally, it causes pharyngeal or skin lesions. It is a Gram-positive, nonmotile and non-sporulating bacterium. The Strain described in this study was isolated from infections amongst American soldiers of certain islands of the North and West Pacific. This is the first completed sequence of a member of the genus Arcanobacterium and the ninth Type Strain genome from the family Actinomycetaceae . The 1,986,154 bp long genome with its 1,821 protein-coding and 64 RNA genes is a part of the G enomic E ncyclopedia of B acteria and A rchaea project.
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complete genome sequence of veillonella parvula Type Strain te3 t
Standards in Genomic Sciences, 2010Co-Authors: Sabine Gronow, Sabine Welnitz, Sam Pitluck, Alla Lapidus, Hope Tice, Alex Copeland, Matt Nolan, Natalia Ivanova, Feng Chen, Jan-fang ChengAbstract:Veillonella parvula (Veillon and Zuber 1898) Prevot 1933 is the Type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque in the human oral cavity and can cause opportunistic infections. The species is strictly anaerobic and grows as small cocci which usually occur in pairs. Veillonellae are characterized by their unusual metabolism which is centered on the activity of the enzyme methylmalonyl-CoA decarboxylase. Strain Te3T, the Type Strain of the species, was isolated from the human intestinal tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the large clostridial family Veillonellaceae, and the 2,132,142 bp long single replicon genome with its 1,859 protein-coding and 61 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Matt Nolan - One of the best experts on this subject based on the ideXlab platform.
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The Genomic Standards Consortium Complete genome sequence of Capnocytophaga ochra- cea Type Strain (VPI 2845T)
2016Co-Authors: Konstantinos Mavrommatis, Sabine Gronow, Elizabeth Saunders, Susan Lucas, Matt Nolan, Alex Copel, Tijana Glavina, Del Rio, Miriam L, Feng ChenAbstract:the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO2-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5 % CO2. Strain VPI 2845 T, the Type Strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome se-quence, and annotation. This is the first completed genome sequence from the flavobacteria
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Type Strain (IVIA-Po-181T)
2015Co-Authors: Patricia Lucas-elío, Sam Pitluck, Matt Nolan, Alex Copel, Lynne Goodwin, John C. Detter, Tanja Woyke, Nikos C, David BruceAbstract:Marinomonas posidonica IVIA-Po-181T Lucas-Elío et al. 2011 belongs to the family Oceanospirillaceae within the phylum Proteobacteria. Different species of the genus Marinomonas can be readily isolated from the seagrass Posidonia oceanica. M. posidonica is among the most abundant species of the genus detected in the cultured microbiota of P. oceanica, suggesting a close relationship with this plant, which has a great ecological value in the Mediterranean Sea, covering an estimated surface of 38,000 Km2. Here we describe the genomic features of M. posidonica. The 3,899,940 bp long genome harbors 3,544 pro-tein-coding genes and 107 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Introduction Strain IVIA-Po-181T is the Type Strain of Marinomonas posidonica, which belongs to the order Oceanospirillales within the class Gammaproteobacteria. Microorganisms belonging to the genus Marinomonas can be readily isolated from different parts of the marine angiosperm Posidonia oceanica, and many different Marinomonas species have been isolated from it [1,2]. The data obtained so far indicate that among the culturable microbiota in the phylloplane and rhizoplane of this plant, the closely related M
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DOI:10.4056/sigs.48727 Complete genome sequence of Streptobacillus moniliformis Type Strain (9901 T)
2013Co-Authors: Matt Nolan, Sabine Gronow, Alla Lapidus, Susan Lucas, Natalia Ivanova, Feng Chen, Alex Copel, Tijana Glavina, Del Rio, Hope TiceAbstract:Streptobacillus moniliformis Levaditi et al. 1925 is the Type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae ' within the phylum Fusobacteria. The 'Leptotrichiaceae ' have not been well characterized, genomically or taxonomically. S. moniliformis, is a Gram-negative, nonmotile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901 T, the Type Strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriale
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Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus Type Strain (NAL(T)).
Standards in genomic sciences, 2012Co-Authors: Iain Anderson, Elizabeth Saunders, Olga Chertkov, Nancy Hammon, Alla Lapidus, Susan Lucas, Shweta Deshpande, Matt Nolan, Amy Chen, Jan-fang ChengAbstract:Sulfobacillus acidophilus Norris et al. 1996 is a member of the genus Sulfobacillus which comprises five species of the order Clostridiales. Sulfobacillus species are of interest for comparison to other sulfur and iron oxidizers and also have biomining applications. This is the first completed genome sequence of a Type Strain of the genus Sulfobacillus, and the second published genome of a member of the species S. acidophilus. The genome, which consists of one chromosome and one plasmid with a total size of 3,557,831 bp harbors 3,626 protein-coding and 69 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph sulfuricurvum kujiense Type Strain yk 1 t
Standards in Genomic Sciences, 2012Co-Authors: Brittany Held, O R Kotsyurbenko, Olga Chertkov, Alla Lapidus, Susan Lucas, Matt Nolan, Nancy HammonAbstract:Sulfuricurvum kujiense Kodama and Watanabe 2004 is the Type species of the monotypic genus Sulfuricurvum, which belongs to the family Helicobacteraceae in the class Epsilonproteobacteria. The species is of interest because it is frequently found in crude oil and oil sands where it utilizes various reduced sulfur compounds such as elemental sulfur, sulfide and thiosulfate as electron donors. Members of the species do not utilize sugars, organic acids or hydrocarbons as carbon and energy sources. This genome sequence represents the Type Strain of the only species in the genus Sulfuricurvum. The genome, which consists of a circular chromosome of 2,574,824 bp length and four plasmids of 118,585 bp, 71,513 bp, 51,014 bp, and 3,421 bp length, respectively, harboring a total of 2,879 protein-coding and 61 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Alex Copeland - One of the best experts on this subject based on the ideXlab platform.
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Complete genome sequence of the Antarctic Halorubrum lacusprofundi Type Strain ACAM 34
Standards in genomic sciences, 2016Co-Authors: Iain Anderson, Eileen Dalin, Alla Lapidus, Hope Tice, Susan Lucas, Alex Copeland, David Bruce, Priya Dassarma, Tijana Glavina Del Rio, Lynne GoodwinAbstract:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The Type Strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi Type Strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.
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Complete genome sequence of Brachyspira murdochii Type Strain (56-150^T)
Standards in Genomic Sciences, 2010Co-Authors: Amrita Pati, Sabine Gronow, Alla Lapidus, Susan Lucas, Alex Copeland, Matt Nolan, Johannes Sikorski, Christine Munk, Tijana Glavina Del Tio, Feng ChenAbstract:Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae . Initially isolated from the intestinal content of a healthy swine, the ‘group B spirochaetes’ were first described as Serpulina murdochii . Members of the family Brachyspiraceae are of great phylogenetic interest because of the extremely isolated location of this family within the phylum ‘ Spirochaetes ’. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a Type Strain of a member of the family Brachyspiraceae and only the second genome sequence from a member of the genus Brachyspira . The 3,241,804 bp long genome with its 2,893 protein-coding and 40 RNA genes is a part of the G enomic E ncyclopedia of B acteria and A rchaea project.
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complete genome sequence of veillonella parvula Type Strain te3 t
Standards in Genomic Sciences, 2010Co-Authors: Sabine Gronow, Sabine Welnitz, Sam Pitluck, Alla Lapidus, Hope Tice, Alex Copeland, Matt Nolan, Natalia Ivanova, Feng Chen, Jan-fang ChengAbstract:Veillonella parvula (Veillon and Zuber 1898) Prevot 1933 is the Type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque in the human oral cavity and can cause opportunistic infections. The species is strictly anaerobic and grows as small cocci which usually occur in pairs. Veillonellae are characterized by their unusual metabolism which is centered on the activity of the enzyme methylmalonyl-CoA decarboxylase. Strain Te3T, the Type Strain of the species, was isolated from the human intestinal tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the large clostridial family Veillonellaceae, and the 2,132,142 bp long single replicon genome with its 1,859 protein-coding and 61 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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complete genome sequence of veillonella parvula Type Strain te3t
Standards in Genomic Sciences, 2010Co-Authors: Sabine Gronow, Sabine Welnitz, Alla Lapidus, Hope Tice, Alex Copeland, Matt Nolan, Natalia Ivanova, Feng Chen, Tijana Glavina Del Rio, Sam PitluckAbstract:Veillonella parvula (Veillon and Zuber 1898) Prevot 1933 is the Type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it is frequently isolated from dental plaque in the human oral cavity and can cause opportunistic infections. The species is strictly anaerobic and grows as small cocci which usually occur in pairs. Veillonellae are characterized by their unusual metabolism which is centered on the activity of the enzyme methylmalonyl-CoA decarboxylase. Strain Te3T, the Type Strain of the species, was isolated from the human intestinal tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the large clostridial family Veillonellaceae, and the 2,132,142 bp long single replicon genome with its 1,859 protein-coding and 61 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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Complete genome sequence of Streptobacillus moniliformis Type Strain (9901^T)
Standards in Genomic Sciences, 2009Co-Authors: Matt Nolan, Sabine Gronow, Tijana Glavina Del Rio, Alla Lapidus, Hope Tice, Susan Lucas, Alex Copeland, Natalia Ivanova, Feng Chen, Sam PitluckAbstract:Streptobacillus moniliformis Levaditi et al. 1925 is the Type and sole species of the genus Streptobacillus , and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family ‘ Leptotrichiaceae ’ within the phylum Fusobacteria . The ‘ Leptotrichiaceae ’ have not been well characterized, genomically or taxonomically. S. moniliformis , is a Gram-negative, non-motile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901^T, the Type Strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriales and no more than the third sequence from the phylum Fusobacteria . The 1,662,578 bp long chromosome and the 10,702 bp plasmid with a total of 1511 protein-coding and 55 RNA genes are part of the G enomic E ncyclopedia of B acteria and A rchaea project.
Susan Lucas - One of the best experts on this subject based on the ideXlab platform.
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Complete genome sequence of the Antarctic Halorubrum lacusprofundi Type Strain ACAM 34
Standards in genomic sciences, 2016Co-Authors: Iain Anderson, Eileen Dalin, Alla Lapidus, Hope Tice, Susan Lucas, Alex Copeland, David Bruce, Priya Dassarma, Tijana Glavina Del Rio, Lynne GoodwinAbstract:Halorubrum lacusprofundi is an extreme halophile within the archaeal phylum Euryarchaeota. The Type Strain ACAM 34 was isolated from Deep Lake, Antarctica. H. lacusprofundi is of phylogenetic interest because it is distantly related to the haloarchaea that have previously been sequenced. It is also of interest because of its psychrotolerance. We report here the complete genome sequence of H. lacusprofundi Type Strain ACAM 34 and its annotation. This genome is part of a 2006 Joint Genome Institute Community Sequencing Program project to sequence genomes of diverse Archaea.
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The Genomic Standards Consortium Complete genome sequence of Capnocytophaga ochra- cea Type Strain (VPI 2845T)
2016Co-Authors: Konstantinos Mavrommatis, Sabine Gronow, Elizabeth Saunders, Susan Lucas, Matt Nolan, Alex Copel, Tijana Glavina, Del Rio, Miriam L, Feng ChenAbstract:the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO2-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5 % CO2. Strain VPI 2845 T, the Type Strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome se-quence, and annotation. This is the first completed genome sequence from the flavobacteria
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DOI:10.4056/sigs.48727 Complete genome sequence of Streptobacillus moniliformis Type Strain (9901 T)
2013Co-Authors: Matt Nolan, Sabine Gronow, Alla Lapidus, Susan Lucas, Natalia Ivanova, Feng Chen, Alex Copel, Tijana Glavina, Del Rio, Hope TiceAbstract:Streptobacillus moniliformis Levaditi et al. 1925 is the Type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically much accessed family 'Leptotrichiaceae ' within the phylum Fusobacteria. The 'Leptotrichiaceae ' have not been well characterized, genomically or taxonomically. S. moniliformis, is a Gram-negative, nonmotile, pleomorphic bacterium and is the etiologic agent of rat bite fever and Haverhill fever. Strain 9901 T, the Type Strain of the species, was isolated from a patient with rat bite fever. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is only the second completed genome sequence of the order Fusobacteriale
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DOI:10.4056/sigs.30527 Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 Type Strain F1
2013Co-Authors: Iain J. Anderson, Eileen Dalin, Alla Lapidus, Susan Lucas, Kerrie Barry, Alex Copel, Tijana Glavina, Del Rio, Hui Sun, Miriam LAbstract:Staphylothermus marinus Fiala and Stetter 1986 belongs to the order Desulfurococcales within the archaeal phylum Crenarchaeota. S. marinus is a hyperthermophilic, sulfur-dependent, anaerobic heterotroph. Strain F1 was isolated from geothermally heated sediments at Vulcano, Italy, but S. marinus has also been isolated from a hydrothermal vent on the East Pacific Rise. We report the complete genome of S. marinus Strain F1, the Type Strain of the species. This is the fifth reported complete genome sequence from the order Desulfurococcales
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Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus Type Strain (NAL(T)).
Standards in genomic sciences, 2012Co-Authors: Iain Anderson, Elizabeth Saunders, Olga Chertkov, Nancy Hammon, Alla Lapidus, Susan Lucas, Shweta Deshpande, Matt Nolan, Amy Chen, Jan-fang ChengAbstract:Sulfobacillus acidophilus Norris et al. 1996 is a member of the genus Sulfobacillus which comprises five species of the order Clostridiales. Sulfobacillus species are of interest for comparison to other sulfur and iron oxidizers and also have biomining applications. This is the first completed genome sequence of a Type Strain of the genus Sulfobacillus, and the second published genome of a member of the species S. acidophilus. The genome, which consists of one chromosome and one plasmid with a total size of 3,557,831 bp harbors 3,626 protein-coding and 69 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
