The Experts below are selected from a list of 138 Experts worldwide ranked by ideXlab platform

Todd P. Michael - One of the best experts on this subject based on the ideXlab platform.

  • extreme haplotype variation in the desiccation tolerant Clubmoss selaginella lepidophylla
    Nature Communications, 2018
    Co-Authors: Robert Vanburen, Jeremy Pardo, Doug Bryant, Ning Jiang, Todd C. Mockler, Patrick Edger, Shujun Ou, Todd P. Michael
    Abstract:

    Plant genome size varies by four orders of magnitude, and most of this variation stems from dynamic changes in repetitive DNA content. Here we report the small 109 Mb genome of Selaginella lepidophylla, a Clubmoss with extreme desiccation tolerance. Single-molecule sequencing enables accurate haplotype assembly of a single heterozygous S. lepidophylla plant, revealing extensive structural variation. We observe numerous haplotype-specific deletions consisting of largely repetitive and heavily methylated sequences, with enrichment in young Gypsy LTR retrotransposons. Such elements are active but rapidly deleted, suggesting “bloat and purge” to maintain a small genome size. Unlike all other land plant lineages, Selaginella has no evidence of a whole-genome duplication event in its evolutionary history, but instead shows unique tandem gene duplication patterns reflecting adaptation to extreme drying. Gene expression changes during desiccation in S. lepidophylla mirror patterns observed across angiosperm resurrection plants. Selaginella lepidophylla is a Clubmoss with extreme desiccation tolerance. Here, the authors assemble its highly heterozygotic haplotypes and examine gene expression changes during desiccation, which shed light on the mechanisms for maintaining a small genome size and adaptation to extreme drying.

  • Extreme haplotype variation in the desiccation-tolerant Clubmoss Selaginella lepidophylla
    Nature Publishing Group, 2018
    Co-Authors: Robert Vanburen, Ching Man Wai, Jeremy Pardo, Doug Bryant, Ning Jiang, Todd C. Mockler, Patrick Edger, Todd P. Michael
    Abstract:

    Selaginella lepidophylla is a Clubmoss with extreme desiccation tolerance. Here, the authors assemble its highly heterozygotic haplotypes and examine gene expression changes during desiccation, which shed light on the mechanisms for maintaining a small genome size and adaptation to extreme drying

Niklas Wikstrom - One of the best experts on this subject based on the ideXlab platform.

Robert Vanburen - One of the best experts on this subject based on the ideXlab platform.

  • extreme haplotype variation in the desiccation tolerant Clubmoss selaginella lepidophylla
    Nature Communications, 2018
    Co-Authors: Robert Vanburen, Jeremy Pardo, Doug Bryant, Ning Jiang, Todd C. Mockler, Patrick Edger, Shujun Ou, Todd P. Michael
    Abstract:

    Plant genome size varies by four orders of magnitude, and most of this variation stems from dynamic changes in repetitive DNA content. Here we report the small 109 Mb genome of Selaginella lepidophylla, a Clubmoss with extreme desiccation tolerance. Single-molecule sequencing enables accurate haplotype assembly of a single heterozygous S. lepidophylla plant, revealing extensive structural variation. We observe numerous haplotype-specific deletions consisting of largely repetitive and heavily methylated sequences, with enrichment in young Gypsy LTR retrotransposons. Such elements are active but rapidly deleted, suggesting “bloat and purge” to maintain a small genome size. Unlike all other land plant lineages, Selaginella has no evidence of a whole-genome duplication event in its evolutionary history, but instead shows unique tandem gene duplication patterns reflecting adaptation to extreme drying. Gene expression changes during desiccation in S. lepidophylla mirror patterns observed across angiosperm resurrection plants. Selaginella lepidophylla is a Clubmoss with extreme desiccation tolerance. Here, the authors assemble its highly heterozygotic haplotypes and examine gene expression changes during desiccation, which shed light on the mechanisms for maintaining a small genome size and adaptation to extreme drying.

  • Extreme haplotype variation in the desiccation-tolerant Clubmoss Selaginella lepidophylla
    Nature Publishing Group, 2018
    Co-Authors: Robert Vanburen, Ching Man Wai, Jeremy Pardo, Doug Bryant, Ning Jiang, Todd C. Mockler, Patrick Edger, Todd P. Michael
    Abstract:

    Selaginella lepidophylla is a Clubmoss with extreme desiccation tolerance. Here, the authors assemble its highly heterozygotic haplotypes and examine gene expression changes during desiccation, which shed light on the mechanisms for maintaining a small genome size and adaptation to extreme drying

Brian J Palik - One of the best experts on this subject based on the ideXlab platform.

  • long term impacts of variable retention harvesting on ground layer plant communities in pinus resinosa forests
    Journal of Applied Ecology, 2016
    Co-Authors: Margaret W Roberts, Anthony W Damato, Christel C Kern, Brian J Palik
    Abstract:

    Concerns about loss of biodiversity and structural complexity in managed forests have recently increased and led to the development of new management strategies focused on restoring or maintaining ecosystem functions while also providing wood outputs. Variable retention harvest (VRH) systems, in which mature overstorey trees are retained in various spatial arrangements across harvested areas, represent one potential approach to this problem. However, long-term evaluations of the effectiveness of this strategy at sustaining plant community composition are needed as this strategy is increasingly applied in managed forest landscapes throughout the world. The forest ground layer plays a central role in forest ecosystem functioning, and we evaluated the long-term (11+ year) dynamics in ground-layer plant communities in response to VRH study in Pinus resinosa Aiton. forests. This large-scale, manipulative study included four overstorey (control, small gap-aggregated, large gap-aggregated and dispersed) and two understorey (ambient and reduced shrubs) treatments replicated four times in 16-ha stands. Changes in ground-layer community composition were apparent 11 years following harvest, regardless of live-tree retention pattern. Richness and diversity increased and were driven by introduction and colonization of ruderal species, while forest interior species continued to persist across treatments. All life-forms responded positively to harvest with the exception of moss and Clubmoss species. The lack of effect of spatial pattern of retention on ground-layer plant communities was likely related to the presence of a dense and persistent shrub layer, a result of decades of fire suppression. In particular, the greatest responses to overstorey retention pattern occurred in areas receiving shrub reduction treatments, indicating this recalcitrant layer likely filtered response to retention pattern. Synthesis and applications. Overall, this work highlights flexibility in choosing a variable retention harvest approach when sustaining ground-layer plant community diversity and composition are goals, but altered disturbance regimes (e.g. fire suppression, timber harvesting) that have facilitated the presence or formation of recalcitrant understories, need to be considered. The legacy effects of historical land use and alterations to natural disturbance regimes on the understorey in northern temperate forests are of equal, if not greater, importance to overstorey retention patterns in eliciting desired responses to variable retention harvest and need to be more carefully considered in future applications of this method.

Sunniva M D Aagaard - One of the best experts on this subject based on the ideXlab platform.