The Experts below are selected from a list of 10254 Experts worldwide ranked by ideXlab platform
Wang, Gui T. - One of the best experts on this subject based on the ideXlab platform.
-
PhyloSuite: An integrated and scalable Desktop Platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
'Wiley', 2020Co-Authors: Zhang Dong, Gao Fangluan, Jakovlic Ivan, Zou Hong, Zhang Jin, Li, Wen X., Wang, Gui T.Abstract:Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often makes the analysis time-consuming and tedious. Here, we present PhyloSuite, a (cross-Platform, open-source, stand-alone Python graphical user interface) user-friendly workflow Desktop Platform dedicated to streamlining molecular sequence data management and evolutionary phylogenetics studies. It uses a plugin-based system that integrates several phylogenetic and bioinformatic tools, thereby streamlining the entire procedure, from data acquisition to phylogenetic tree annotation (in combination with iTOL). It has the following features: (a) point-and-click and drag-and-drop graphical user interface; (b) a workplace to manage and organize molecular sequence data and results of analyses; (c) GenBank entry extraction and comparative statistics; and (d) a phylogenetic workflow with batch processing capability, comprising sequence alignment (mafft and macse), alignment optimization (trimAl, HmmCleaner and Gblocks), data set concatenation, best partitioning scheme and best evolutionary model selection (PartitionFinder and modelfinder), and phylogenetic inference (MrBayes and iq-tree). PhyloSuite is designed for both beginners and experienced researchers, allowing the former to quick-start their way into phylogenetic analysis, and the latter to conduct, store and manage their work in a streamlined way, and spend more time investigating scientific questions instead of wasting it on transferring files from one software program to another
Gui T Wang - One of the best experts on this subject based on the ideXlab platform.
-
phylosuite an integrated and scalable Desktop Platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
bioRxiv, 2018Co-Authors: Dong Zhang, Fangluan Gao, Ivan Jakovlic, Hong Zou, Jin Zhang, Gui T WangAbstract:Abstract Multi-gene and genomic datasets have become commonplace in the field of phylogenetics, but many of the existing tools are not designed for such datasets, which makes the analysis time-consuming and tedious. We therefore present PhyloSuite, a user-friendly workflow Desktop Platform dedicated to streamlining molecular sequence data management and evolutionary phylogenetics studies. It employs a plugin-based system that integrates a number of useful phylogenetic and bioinformatic tools, thereby streamlining the entire procedure, from data acquisition to phylogenetic tree annotation, with the following features: (i) point-and-click and drag-and-drop graphical user interface, (ii) a workspace to manage and organize molecular sequence data and results of analyses, (iii) GenBank entries extraction and comparative statistics, (iv) a phylogenetic workflow with batch processing capability, (v) elaborate bioinformatic analysis for mitochondrial genomes. The aim of PhyloSuite is to enable researchers to spend more time playing with scientific questions, instead of wasting it on conducting standard analyses. The compiled binary of PhyloSuite is available under the GPL license at https://github.com/dongzhang0725/PhyloSuite/releases, implemented in Python and runs on Windows, Mac OSX and Linux.
Ye Chow Kuang - One of the best experts on this subject based on the ideXlab platform.
-
logic built in self test instrumentation system for engineering test technology education
The Journal of Thoracic and Cardiovascular Surgery, 2020Co-Authors: S Demidenko, M T Chew, B T Nguyen, Melanie Poleen Ooi, Ye Chow KuangAbstract:A low-cost Desktop system has been developed to train future electronic engineering specialists to the principles and implementation of Built-In Self-Test (BIST) techniques for digital semiconductor Integrated Circuits (ICs). It is based on the National Instruments LabView software and ELVIS modular engineering educational laboratory device. The system includes a configurable Pseudo-Random Test Generator (PRTG), programmable hardware logic Device Under Test (DUT) emulator, and test response compactor unit - Multiple-Input Signature Register (MISR) along with associated circuitry and relevant software. It is a part of the Desktop Platform for test engineering education - a family of compact low-cost systems specifically developed for training in test technology.
Zhang Dong - One of the best experts on this subject based on the ideXlab platform.
-
PhyloSuite: An integrated and scalable Desktop Platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
'Wiley', 2020Co-Authors: Zhang Dong, Gao Fangluan, Jakovlic Ivan, Zou Hong, Zhang Jin, Li, Wen X., Wang, Gui T.Abstract:Multigene and genomic data sets have become commonplace in the field of phylogenetics, but many existing tools are not designed for such data sets, which often makes the analysis time-consuming and tedious. Here, we present PhyloSuite, a (cross-Platform, open-source, stand-alone Python graphical user interface) user-friendly workflow Desktop Platform dedicated to streamlining molecular sequence data management and evolutionary phylogenetics studies. It uses a plugin-based system that integrates several phylogenetic and bioinformatic tools, thereby streamlining the entire procedure, from data acquisition to phylogenetic tree annotation (in combination with iTOL). It has the following features: (a) point-and-click and drag-and-drop graphical user interface; (b) a workplace to manage and organize molecular sequence data and results of analyses; (c) GenBank entry extraction and comparative statistics; and (d) a phylogenetic workflow with batch processing capability, comprising sequence alignment (mafft and macse), alignment optimization (trimAl, HmmCleaner and Gblocks), data set concatenation, best partitioning scheme and best evolutionary model selection (PartitionFinder and modelfinder), and phylogenetic inference (MrBayes and iq-tree). PhyloSuite is designed for both beginners and experienced researchers, allowing the former to quick-start their way into phylogenetic analysis, and the latter to conduct, store and manage their work in a streamlined way, and spend more time investigating scientific questions instead of wasting it on transferring files from one software program to another
Dong Zhang - One of the best experts on this subject based on the ideXlab platform.
-
phylosuite an integrated and scalable Desktop Platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
bioRxiv, 2018Co-Authors: Dong Zhang, Fangluan Gao, Ivan Jakovlic, Hong Zou, Jin Zhang, Gui T WangAbstract:Abstract Multi-gene and genomic datasets have become commonplace in the field of phylogenetics, but many of the existing tools are not designed for such datasets, which makes the analysis time-consuming and tedious. We therefore present PhyloSuite, a user-friendly workflow Desktop Platform dedicated to streamlining molecular sequence data management and evolutionary phylogenetics studies. It employs a plugin-based system that integrates a number of useful phylogenetic and bioinformatic tools, thereby streamlining the entire procedure, from data acquisition to phylogenetic tree annotation, with the following features: (i) point-and-click and drag-and-drop graphical user interface, (ii) a workspace to manage and organize molecular sequence data and results of analyses, (iii) GenBank entries extraction and comparative statistics, (iv) a phylogenetic workflow with batch processing capability, (v) elaborate bioinformatic analysis for mitochondrial genomes. The aim of PhyloSuite is to enable researchers to spend more time playing with scientific questions, instead of wasting it on conducting standard analyses. The compiled binary of PhyloSuite is available under the GPL license at https://github.com/dongzhang0725/PhyloSuite/releases, implemented in Python and runs on Windows, Mac OSX and Linux.