The Experts below are selected from a list of 477 Experts worldwide ranked by ideXlab platform
Mark S Springer - One of the best experts on this subject based on the ideXlab platform.
-
Cytogenetics Meets Phylogenetics: A Review of Karyotype Evolution in Diprotodontian Marsupials
The Journal of heredity, 2010Co-Authors: Michael Westerman, Robert W Meredith, Mark S SpringerAbstract:We have used a combined approach of phylogenetics and cytogenetics to describe karyotype evolution in Diprotodontia. Molecular relationships of Diprotodontian marsupials have been clarified using a concatenation of 5 nuclear gene sequences from multiple exemplars of all extant genera. Our well-resolved phylogenetic tree has been used as a basis for understanding chromosome evolution both within this Order, as well as in marsupials in general. It is clear that the ancestral marsupial karyotype comprised 14 relatively large chromosomes of the form retained relatively unchanged in caenolestids, microbiotherians, peramelemorphians, vombatids, and pygmy possums. Four pericentric inversions occurred in the ancestral dasyuromorphian (chromosomes 1, 2, 4, and 6) and a different 4 in the ancestral didelphimorphian (chromosomes 1, 3, 5 and 6). Within Diprotodontia, although the ancestral marsupial karyotype has been retained in some families such as the extant wombats and pygmy possums, there have been major karytoypic repatternings early in the evolution of others. Chromosome rearrangements in Diprotodontia include centric fissions and fusions, translocations, and centromere shifts. Karyotypic changes are discussed in the context of current hypotheses concerning centromeres, chromosomal fragile sites, and mobile elements in marsupials and the probable repeated involvement of these elements in karyotypic restructuring.
-
A Phylogeny and Timescale for the Evolution of Pseudocheiridae (Marsupialia: Diprotodontia) in Australia and New Guinea
Journal of Mammalian Evolution, 2010Co-Authors: Robert W Meredith, Miguel A. Mendoza, Karen K. Roberts, Michael Westerman, Mark S SpringerAbstract:Pseudocheiridae (Marsupialia: Diprotodontia) is a family of endemic Australasian arboreal folivores, more commonly known as ringtail possums. Seventeen extant species are grouped into six genera ( Pseudocheirus , Pseudochirulus , Hemibelideus , Petauroides , Pseudochirops , Petropseudes ). Pseudochirops and Pseudochirulus are the only genera with representatives on New Guinea and surrounding western islands. Here, we examine phylogenetic relationships among 13 of the 17 extant pseudocheirid species based on protein-coding portions of the ApoB, BRCA1, ENAM, IRBP, Rag1, and vWF genes. Maximum parsimony, maximum likelihood, and Bayesian methods were used to estimate phylogenetic relationships. Two different relaxed molecular clock methods were used to estimate divergence times. Bayesian and maximum parsimony methods were used to reconstruct ancestral character states for geographic provenance and maximum elevation occupied. We find robust support for the monophyly of Pseudocheirinae ( Pseudochirulus + Pseudocheirus ), Hemibelidinae ( Hemibelideus + Petauroides ), and Pseudochiropsinae ( Pseudochirops + Petropseudes ), respectively, and for an association of Pseudocheirinae and Hemibelidinae to the exclusion of Pseudochiropsinae. Within Pseudochiropsinae, Petropseudes grouped more closely with the New Guinean Pseudochirops spp. than with the Australian Pseudochirops archeri, rendering Pseudochirops paraphyletic. New Guinean species belonging to Pseudochirops are monophyletic, as are New Guinean species belonging to Pseudochirulus . Molecular dates and ancestral reconstructions of geographic provenance combine to suggest that the ancestors of extant New Guinean Pseudochirops spp. and Pseudochirulus spp. dispersed from Australia to New Guinea ∼12.1–6.5 Ma ( Pseudochirops ) and ∼6.0–2.4 Ma ( Pseudochirulus ). Ancestral state reconstructions support the hypothesis that occupation of high elevations (>3000 m) is a derived feature that evolved on the terminal branch leading to Pseudochirops cupreus , and either evolved in the ancestor of Pseudochirulus forbesi , Pseudochirulus mayeri , and Pseudochirulus caroli , with subsequent loss in P. caroli , or evolved independently in P. mayeri and P. forbesi . Divergence times within the New Guinean Pseudochirops clade are generally coincident with the uplift of the central cordillera and other highlands. Diversification within New Guinean Pseudochirulus occurred in the Plio-Pleistocene after the establishment of the Central Range and other highlands.
-
A phylogeny of Diprotodontia (Marsupialia) based on sequences for five nuclear genes
Molecular Phylogenetics and Evolution, 2009Co-Authors: Robert W Meredith, Michael Westerman, Mark S SpringerAbstract:Even though the marsupial order Diprotodontia is one of the most heavily studied groups of Australasian marsupials, phylogenetic relationships within this group remain contentious. The more than 125 living species of Diprotodontia can be divided into two main groups: Vombatiformes (wombats and koalas) and Phalangerida. Phalangerida is composed of the kangaroos (Macropodidae, Potoroidae, and Hypsiprymnodontidae) and possums (Phalangeridae, Burramyidae, Petauridae, Pseudocheiridae, Tarsipedidae, and Acrobatidae). Much of the debate has focused on relationships among the families of possums and whether possums are monophyletic or paraphyletic. A limitation of previous investigations is that no study to date has investigated Diprotodontian relationships using all genera. Here, we examine Diprotodontian interrelationships using a nuclear multigene molecular data set representing all recognized extant Diprotodontian genera. Maximum parsimony, maximum likelihood, and Bayesian methods were used to analyze sequence data obtained from protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF. We also applied a Bayesian relaxed molecular clock method to estimate times of divergence. Diprotodontia was rooted between Vombatiformes and Phalangerida. Within Phalangerida, the model-based methods strongly support possum paraphyly with Phalangeroidea (Burramyidae + Phalangeridae) grouping with the kangaroos (Macropodiformes) to the exclusion of Petauroidea (Tarsipedidae, Acrobatidae, Pseudocheiridae, and Petauridae). Within Petauroidea, Tarsipedidae grouped with both Petauridae and Pseudocheiridae to the exclusion of Acrobatidae. Our analyses also suggest that the Diprotodontian genera Pseudochirops and Strigocuscus are paraphyletic and diphyletic, respectively, as currently recognized. Dating analyses suggest Diprotodontia diverged from other australidelphians in the late Paleocene to early Eocene with all interfamilial divergences occurring prior to the early Miocene except for the split between the Potoroidae and Macropodidae, which occurred sometime in the mid-Miocene. Ancestral state reconstructions using a Bayesian method suggest that the patagium evolved independently in the Acrobatidae, Petauridae, and Pseudocheiridae. Ancestral state reconstructions of ecological venue suggest that the ancestor of Diprotodontia was arboreal. Within Diprotodontia, the common ancestor of Macropodidae was reconstructed as terrestrial, suggesting that tree kangaroos (Dendrolagus) are secondarily arboreal.
-
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
Journal of Mammalian Evolution, 2008Co-Authors: Robert W Meredith, Judd A. Case, Michael Westerman, Mark S SpringerAbstract:Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. Within the Australasian clade, Diprotodontia is the sister taxon to a Notoryctemorphia + Dasyuromorphia + Peramelemorphia clade. Within the Diprotodontia, Vombatiformes (wombat + koala) is the sister taxon to a paraphyletic possum group (Phalangeriformes) with kangaroos nested inside. Molecular dating analyses suggest Late Cretaceous/Paleocene dates for all interordinal divergences. All intraordinal divergences were placed in the mid to late Cenozoic except for the deepest splits within the Diprotodontia. Our UBBL estimates of the marsupial fossil record indicate that the South American record is approximately as complete as the Australasian record.
-
Relationships Among Families of Diprotodontia (Marsupialia) and the Phylogenetic Position of the Autapomorphic Honey Possum (Tarsipes rostratus)
Journal of Mammalian Evolution, 2004Co-Authors: John R. Kavanagh, Angela Burk-herrick, Mike Westerman, Mark S SpringerAbstract:The Australasian marsupial order Diprotodontia includes ten extant families that are grouped into the suborders Vombatiformes (koalas and wombats), Macropodiformes (kangaroos and allies), and Phalangeriformes (possums and gliders). We investigated interfamilial relationships using mitochondrial 12S rRNA, valine tRNA, and 16S rRNA gene sequences. Our results support the monophyly of both Vombatiformes and Macropodiformes, but not Phalangeriformes. Among possums and gliders, there was strong support for a petauroid clade that includes Pseudocheiridae (ringtail possums), Petauridae (sugar glider, striped possums), Acrobatidae (feathertail possums), and the monotypic family Tarsipedidae, which is represented by the highly specialized and autapomorphic honey possum ( Tarsipes rostratus ). Other prior hypotheses for the phylogenetic placement of the honey possum were rejected by statistical tests. The inclusion of the honey possum within Petauroidea suggests that derived ultrastructural features of Tarsipes ' spermatozoa evolved independently in Tarsipes versus polyprotodont Australasian marsupials.
Michael Westerman - One of the best experts on this subject based on the ideXlab platform.
-
germline viral fossils guide in silico reconstruction of a mid cenozoic era marsupial adeno associated virus
Scientific Reports, 2016Co-Authors: Richard Smith, Michael Westerman, Claus V Hallwirth, Nicola A Hetherington, Yushan Tseng, Sylvain Cecchini, Tamas Virag, Monalarissa Ziegler, Igor B Rogozin, Eugene V KooninAbstract:Germline endogenous viral elements (EVEs) genetically preserve viral nucleotide sequences useful to the study of viral evolution, gene mutation, and the phylogenetic relationships among host organisms. Here, we describe a lineage-specific, adeno-associated virus (AAV)-derived endogenous viral element (mAAV-EVE1) found within the germline of numerous closely related marsupial species. Molecular screening of a marsupial DNA panel indicated that mAAV-EVE1 occurs specifically within the marsupial suborder Macropodiformes (present-day kangaroos, wallabies, and related macropodoids), to the exclusion of other Diprotodontian lineages. Orthologous mAAV-EVE1 locus sequences from sixteen macropodoid species, representing a speciation history spanning an estimated 30 million years, facilitated compilation of an inferred ancestral sequence that recapitulates the genome of an ancient marsupial AAV that circulated among Australian metatherian fauna sometime during the late Eocene to early Oligocene. In silico gene reconstruction and molecular modelling indicate remarkable conservation of viral structure over a geologic timescale. Characterisation of AAV-EVE loci among disparate species affords insight into AAV evolution and, in the case of macropodoid species, may offer an additional genetic basis for assignment of phylogenetic relationships among the Macropodoidea. From an applied perspective, the identified AAV “fossils” provide novel capsid sequences for use in translational research and clinical applications.
-
Cytogenetics Meets Phylogenetics: A Review of Karyotype Evolution in Diprotodontian Marsupials
The Journal of heredity, 2010Co-Authors: Michael Westerman, Robert W Meredith, Mark S SpringerAbstract:We have used a combined approach of phylogenetics and cytogenetics to describe karyotype evolution in Diprotodontia. Molecular relationships of Diprotodontian marsupials have been clarified using a concatenation of 5 nuclear gene sequences from multiple exemplars of all extant genera. Our well-resolved phylogenetic tree has been used as a basis for understanding chromosome evolution both within this Order, as well as in marsupials in general. It is clear that the ancestral marsupial karyotype comprised 14 relatively large chromosomes of the form retained relatively unchanged in caenolestids, microbiotherians, peramelemorphians, vombatids, and pygmy possums. Four pericentric inversions occurred in the ancestral dasyuromorphian (chromosomes 1, 2, 4, and 6) and a different 4 in the ancestral didelphimorphian (chromosomes 1, 3, 5 and 6). Within Diprotodontia, although the ancestral marsupial karyotype has been retained in some families such as the extant wombats and pygmy possums, there have been major karytoypic repatternings early in the evolution of others. Chromosome rearrangements in Diprotodontia include centric fissions and fusions, translocations, and centromere shifts. Karyotypic changes are discussed in the context of current hypotheses concerning centromeres, chromosomal fragile sites, and mobile elements in marsupials and the probable repeated involvement of these elements in karyotypic restructuring.
-
A Phylogeny and Timescale for the Evolution of Pseudocheiridae (Marsupialia: Diprotodontia) in Australia and New Guinea
Journal of Mammalian Evolution, 2010Co-Authors: Robert W Meredith, Miguel A. Mendoza, Karen K. Roberts, Michael Westerman, Mark S SpringerAbstract:Pseudocheiridae (Marsupialia: Diprotodontia) is a family of endemic Australasian arboreal folivores, more commonly known as ringtail possums. Seventeen extant species are grouped into six genera ( Pseudocheirus , Pseudochirulus , Hemibelideus , Petauroides , Pseudochirops , Petropseudes ). Pseudochirops and Pseudochirulus are the only genera with representatives on New Guinea and surrounding western islands. Here, we examine phylogenetic relationships among 13 of the 17 extant pseudocheirid species based on protein-coding portions of the ApoB, BRCA1, ENAM, IRBP, Rag1, and vWF genes. Maximum parsimony, maximum likelihood, and Bayesian methods were used to estimate phylogenetic relationships. Two different relaxed molecular clock methods were used to estimate divergence times. Bayesian and maximum parsimony methods were used to reconstruct ancestral character states for geographic provenance and maximum elevation occupied. We find robust support for the monophyly of Pseudocheirinae ( Pseudochirulus + Pseudocheirus ), Hemibelidinae ( Hemibelideus + Petauroides ), and Pseudochiropsinae ( Pseudochirops + Petropseudes ), respectively, and for an association of Pseudocheirinae and Hemibelidinae to the exclusion of Pseudochiropsinae. Within Pseudochiropsinae, Petropseudes grouped more closely with the New Guinean Pseudochirops spp. than with the Australian Pseudochirops archeri, rendering Pseudochirops paraphyletic. New Guinean species belonging to Pseudochirops are monophyletic, as are New Guinean species belonging to Pseudochirulus . Molecular dates and ancestral reconstructions of geographic provenance combine to suggest that the ancestors of extant New Guinean Pseudochirops spp. and Pseudochirulus spp. dispersed from Australia to New Guinea ∼12.1–6.5 Ma ( Pseudochirops ) and ∼6.0–2.4 Ma ( Pseudochirulus ). Ancestral state reconstructions support the hypothesis that occupation of high elevations (>3000 m) is a derived feature that evolved on the terminal branch leading to Pseudochirops cupreus , and either evolved in the ancestor of Pseudochirulus forbesi , Pseudochirulus mayeri , and Pseudochirulus caroli , with subsequent loss in P. caroli , or evolved independently in P. mayeri and P. forbesi . Divergence times within the New Guinean Pseudochirops clade are generally coincident with the uplift of the central cordillera and other highlands. Diversification within New Guinean Pseudochirulus occurred in the Plio-Pleistocene after the establishment of the Central Range and other highlands.
-
A phylogeny of Diprotodontia (Marsupialia) based on sequences for five nuclear genes
Molecular Phylogenetics and Evolution, 2009Co-Authors: Robert W Meredith, Michael Westerman, Mark S SpringerAbstract:Even though the marsupial order Diprotodontia is one of the most heavily studied groups of Australasian marsupials, phylogenetic relationships within this group remain contentious. The more than 125 living species of Diprotodontia can be divided into two main groups: Vombatiformes (wombats and koalas) and Phalangerida. Phalangerida is composed of the kangaroos (Macropodidae, Potoroidae, and Hypsiprymnodontidae) and possums (Phalangeridae, Burramyidae, Petauridae, Pseudocheiridae, Tarsipedidae, and Acrobatidae). Much of the debate has focused on relationships among the families of possums and whether possums are monophyletic or paraphyletic. A limitation of previous investigations is that no study to date has investigated Diprotodontian relationships using all genera. Here, we examine Diprotodontian interrelationships using a nuclear multigene molecular data set representing all recognized extant Diprotodontian genera. Maximum parsimony, maximum likelihood, and Bayesian methods were used to analyze sequence data obtained from protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF. We also applied a Bayesian relaxed molecular clock method to estimate times of divergence. Diprotodontia was rooted between Vombatiformes and Phalangerida. Within Phalangerida, the model-based methods strongly support possum paraphyly with Phalangeroidea (Burramyidae + Phalangeridae) grouping with the kangaroos (Macropodiformes) to the exclusion of Petauroidea (Tarsipedidae, Acrobatidae, Pseudocheiridae, and Petauridae). Within Petauroidea, Tarsipedidae grouped with both Petauridae and Pseudocheiridae to the exclusion of Acrobatidae. Our analyses also suggest that the Diprotodontian genera Pseudochirops and Strigocuscus are paraphyletic and diphyletic, respectively, as currently recognized. Dating analyses suggest Diprotodontia diverged from other australidelphians in the late Paleocene to early Eocene with all interfamilial divergences occurring prior to the early Miocene except for the split between the Potoroidae and Macropodidae, which occurred sometime in the mid-Miocene. Ancestral state reconstructions using a Bayesian method suggest that the patagium evolved independently in the Acrobatidae, Petauridae, and Pseudocheiridae. Ancestral state reconstructions of ecological venue suggest that the ancestor of Diprotodontia was arboreal. Within Diprotodontia, the common ancestor of Macropodidae was reconstructed as terrestrial, suggesting that tree kangaroos (Dendrolagus) are secondarily arboreal.
-
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
Journal of Mammalian Evolution, 2008Co-Authors: Robert W Meredith, Judd A. Case, Michael Westerman, Mark S SpringerAbstract:Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. Within the Australasian clade, Diprotodontia is the sister taxon to a Notoryctemorphia + Dasyuromorphia + Peramelemorphia clade. Within the Diprotodontia, Vombatiformes (wombat + koala) is the sister taxon to a paraphyletic possum group (Phalangeriformes) with kangaroos nested inside. Molecular dating analyses suggest Late Cretaceous/Paleocene dates for all interordinal divergences. All intraordinal divergences were placed in the mid to late Cenozoic except for the deepest splits within the Diprotodontia. Our UBBL estimates of the marsupial fossil record indicate that the South American record is approximately as complete as the Australasian record.
Robert W Meredith - One of the best experts on this subject based on the ideXlab platform.
-
Cytogenetics Meets Phylogenetics: A Review of Karyotype Evolution in Diprotodontian Marsupials
The Journal of heredity, 2010Co-Authors: Michael Westerman, Robert W Meredith, Mark S SpringerAbstract:We have used a combined approach of phylogenetics and cytogenetics to describe karyotype evolution in Diprotodontia. Molecular relationships of Diprotodontian marsupials have been clarified using a concatenation of 5 nuclear gene sequences from multiple exemplars of all extant genera. Our well-resolved phylogenetic tree has been used as a basis for understanding chromosome evolution both within this Order, as well as in marsupials in general. It is clear that the ancestral marsupial karyotype comprised 14 relatively large chromosomes of the form retained relatively unchanged in caenolestids, microbiotherians, peramelemorphians, vombatids, and pygmy possums. Four pericentric inversions occurred in the ancestral dasyuromorphian (chromosomes 1, 2, 4, and 6) and a different 4 in the ancestral didelphimorphian (chromosomes 1, 3, 5 and 6). Within Diprotodontia, although the ancestral marsupial karyotype has been retained in some families such as the extant wombats and pygmy possums, there have been major karytoypic repatternings early in the evolution of others. Chromosome rearrangements in Diprotodontia include centric fissions and fusions, translocations, and centromere shifts. Karyotypic changes are discussed in the context of current hypotheses concerning centromeres, chromosomal fragile sites, and mobile elements in marsupials and the probable repeated involvement of these elements in karyotypic restructuring.
-
A Phylogeny and Timescale for the Evolution of Pseudocheiridae (Marsupialia: Diprotodontia) in Australia and New Guinea
Journal of Mammalian Evolution, 2010Co-Authors: Robert W Meredith, Miguel A. Mendoza, Karen K. Roberts, Michael Westerman, Mark S SpringerAbstract:Pseudocheiridae (Marsupialia: Diprotodontia) is a family of endemic Australasian arboreal folivores, more commonly known as ringtail possums. Seventeen extant species are grouped into six genera ( Pseudocheirus , Pseudochirulus , Hemibelideus , Petauroides , Pseudochirops , Petropseudes ). Pseudochirops and Pseudochirulus are the only genera with representatives on New Guinea and surrounding western islands. Here, we examine phylogenetic relationships among 13 of the 17 extant pseudocheirid species based on protein-coding portions of the ApoB, BRCA1, ENAM, IRBP, Rag1, and vWF genes. Maximum parsimony, maximum likelihood, and Bayesian methods were used to estimate phylogenetic relationships. Two different relaxed molecular clock methods were used to estimate divergence times. Bayesian and maximum parsimony methods were used to reconstruct ancestral character states for geographic provenance and maximum elevation occupied. We find robust support for the monophyly of Pseudocheirinae ( Pseudochirulus + Pseudocheirus ), Hemibelidinae ( Hemibelideus + Petauroides ), and Pseudochiropsinae ( Pseudochirops + Petropseudes ), respectively, and for an association of Pseudocheirinae and Hemibelidinae to the exclusion of Pseudochiropsinae. Within Pseudochiropsinae, Petropseudes grouped more closely with the New Guinean Pseudochirops spp. than with the Australian Pseudochirops archeri, rendering Pseudochirops paraphyletic. New Guinean species belonging to Pseudochirops are monophyletic, as are New Guinean species belonging to Pseudochirulus . Molecular dates and ancestral reconstructions of geographic provenance combine to suggest that the ancestors of extant New Guinean Pseudochirops spp. and Pseudochirulus spp. dispersed from Australia to New Guinea ∼12.1–6.5 Ma ( Pseudochirops ) and ∼6.0–2.4 Ma ( Pseudochirulus ). Ancestral state reconstructions support the hypothesis that occupation of high elevations (>3000 m) is a derived feature that evolved on the terminal branch leading to Pseudochirops cupreus , and either evolved in the ancestor of Pseudochirulus forbesi , Pseudochirulus mayeri , and Pseudochirulus caroli , with subsequent loss in P. caroli , or evolved independently in P. mayeri and P. forbesi . Divergence times within the New Guinean Pseudochirops clade are generally coincident with the uplift of the central cordillera and other highlands. Diversification within New Guinean Pseudochirulus occurred in the Plio-Pleistocene after the establishment of the Central Range and other highlands.
-
A phylogeny of Diprotodontia (Marsupialia) based on sequences for five nuclear genes
Molecular Phylogenetics and Evolution, 2009Co-Authors: Robert W Meredith, Michael Westerman, Mark S SpringerAbstract:Even though the marsupial order Diprotodontia is one of the most heavily studied groups of Australasian marsupials, phylogenetic relationships within this group remain contentious. The more than 125 living species of Diprotodontia can be divided into two main groups: Vombatiformes (wombats and koalas) and Phalangerida. Phalangerida is composed of the kangaroos (Macropodidae, Potoroidae, and Hypsiprymnodontidae) and possums (Phalangeridae, Burramyidae, Petauridae, Pseudocheiridae, Tarsipedidae, and Acrobatidae). Much of the debate has focused on relationships among the families of possums and whether possums are monophyletic or paraphyletic. A limitation of previous investigations is that no study to date has investigated Diprotodontian relationships using all genera. Here, we examine Diprotodontian interrelationships using a nuclear multigene molecular data set representing all recognized extant Diprotodontian genera. Maximum parsimony, maximum likelihood, and Bayesian methods were used to analyze sequence data obtained from protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF. We also applied a Bayesian relaxed molecular clock method to estimate times of divergence. Diprotodontia was rooted between Vombatiformes and Phalangerida. Within Phalangerida, the model-based methods strongly support possum paraphyly with Phalangeroidea (Burramyidae + Phalangeridae) grouping with the kangaroos (Macropodiformes) to the exclusion of Petauroidea (Tarsipedidae, Acrobatidae, Pseudocheiridae, and Petauridae). Within Petauroidea, Tarsipedidae grouped with both Petauridae and Pseudocheiridae to the exclusion of Acrobatidae. Our analyses also suggest that the Diprotodontian genera Pseudochirops and Strigocuscus are paraphyletic and diphyletic, respectively, as currently recognized. Dating analyses suggest Diprotodontia diverged from other australidelphians in the late Paleocene to early Eocene with all interfamilial divergences occurring prior to the early Miocene except for the split between the Potoroidae and Macropodidae, which occurred sometime in the mid-Miocene. Ancestral state reconstructions using a Bayesian method suggest that the patagium evolved independently in the Acrobatidae, Petauridae, and Pseudocheiridae. Ancestral state reconstructions of ecological venue suggest that the ancestor of Diprotodontia was arboreal. Within Diprotodontia, the common ancestor of Macropodidae was reconstructed as terrestrial, suggesting that tree kangaroos (Dendrolagus) are secondarily arboreal.
-
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
Journal of Mammalian Evolution, 2008Co-Authors: Robert W Meredith, Judd A. Case, Michael Westerman, Mark S SpringerAbstract:Even though marsupials are taxonomically less diverse than placentals, they exhibit comparable morphological and ecological diversity. However, much of their fossil record is thought to be missing, particularly for the Australasian groups. The more than 330 living species of marsupials are grouped into three American (Didelphimorphia, Microbiotheria, and Paucituberculata) and four Australasian (Dasyuromorphia, Diprotodontia, Notoryctemorphia, and Peramelemorphia) orders. Interordinal relationships have been investigated using a wide range of methods that have often yielded contradictory results. Much of the controversy has focused on the placement of Dromiciops gliroides (Microbiotheria). Studies either support a sister-taxon relationship to a monophyletic Australasian clade or a nested position within the Australasian radiation. Familial relationships within the Diprotodontia have also proved difficult to resolve. Here, we examine higher-level marsupial relationships using a nuclear multigene molecular data set representing all living orders. Protein-coding portions of ApoB, BRCA1, IRBP, Rag1, and vWF were analyzed using maximum parsimony, maximum likelihood, and Bayesian methods. Two different Bayesian relaxed molecular clock methods were employed to construct a timescale for marsupial evolution and estimate the unrepresented basal branch length (UBBL). Maximum likelihood and Bayesian results suggest that the root of the marsupial tree is between Didelphimorphia and all other marsupials. All methods provide strong support for the monophyly of Australidelphia. Within Australidelphia, Dromiciops is the sister-taxon to a monophyletic Australasian clade. Within the Australasian clade, Diprotodontia is the sister taxon to a Notoryctemorphia + Dasyuromorphia + Peramelemorphia clade. Within the Diprotodontia, Vombatiformes (wombat + koala) is the sister taxon to a paraphyletic possum group (Phalangeriformes) with kangaroos nested inside. Molecular dating analyses suggest Late Cretaceous/Paleocene dates for all interordinal divergences. All intraordinal divergences were placed in the mid to late Cenozoic except for the deepest splits within the Diprotodontia. Our UBBL estimates of the marsupial fossil record indicate that the South American record is approximately as complete as the Australasian record.
Kenneth W. S. Ashwell - One of the best experts on this subject based on the ideXlab platform.
-
Brain and Behavior of Dromiciops gliroides
Journal of Mammalian Evolution, 2019Co-Authors: Yamila Gurovich, Kenneth W. S. AshwellAbstract:We have analyzed the internal structure of the brain of the microbiotherian marsupial Dromiciops gliroides and compared it with the brains of American and Australian marsupials. Dromiciops does not have a fasciculus aberrans, but does exhibit other features of brain structure that are similar to diprotodontid metatherians (e.g., lamination of the lateral geniculate nucleus of the dorsal thalamus). Cortical organization in Dromiciops shows some similarities with that in Australian marsupial carnivores in that the proportional areas of isocortex devoted to somatosensory and visual function are similar in size to each other, and greater in area than that devoted to olfactory or auditory function. This points to similar sensory requirements for the foraging lifestyle of Dromiciops and small Australian marsupial carnivores, with isocortical specialization for somatosensation and vision. We also examined phylogenetic relationships of Dromiciops with extant marsupials based on maximum parsimony analysis using a soft body brain morphology-only matrix, representing 93 extant marsupial taxa. The results recovered Dromiciops as a sister group to the Australasian marsupial clade Diprotodontia.
-
ANTERIOR COMMISSURE OF THE WALLABY (MACROPUS EUGENII) : ADULT MORPHOLOGY AND DEVELOPMENT
The Journal of Comparative Neurology, 1996Co-Authors: Kenneth W. S. Ashwell, Lauren R. Marotte, Lixin Li, Phil M.e. WaiteAbstract:In metatheria, all neo- and paleo-cortical commissural connections are made by the anterior commissure. We have examined the adult morphology of this commissure and its development in a diprotodontid metatherian, the wallaby (Macropus eugenii), at both the light and electron microscope level. The total number of axons in the adult anterior commissure was 21.7 million, of which 55–62% were myelinated. The dorsal two thirds of the commissure, containing neocortical commissural axons, showed a higher percentage of larger, myelinated axons than the ventral one third, which contains paleocortical commissural axons. The commissure also showed a topographical gradient, with cells in the dorsal cortex projecting through the dorsal region of the commissure, the fasciculus aberrans. In the rostrocaudal axis, axons from the frontal cortex tended to pass more anteriorly through the commissure and those from the occipital more posteriorly, but there was extensive overlap of projections from different areas. The gestation length of this wallaby is 28.3 days, and all commissural development occurs postnatally. The anterior commissure first appeared at P (postnatal day) 14, at which time commissural fibres were apparently derived from the external capsule exclusively. Commissural fibres passing through the internal capsule, and joining the anterior commissure via the fasciculus aberrans, were first noted at P18. By that age there were 94,000 to 161,000 axons. Peak axon counts of 50 to 63 million occurred between P100 and P150. The number of growth cones in a single midline section peaked at approximately P114 (480,000) and dropped to 0 by P170. The distribution of growth cones was analysed during the early stages of anterior commissure development (P18, P30, P82). At P18, growth cones were concentrated in the dorsal parts of the commissural bundle, suggesting a ventrodorsal sequence of addition of axons. There was no apparent preferential association of growth cones with the periphery of the commissure or glial structures at any of the three ages examined. The results show that axonal overproduction and regression in cortical commissural connections are features of development in diprotodontid metatheria, as in eutheria. © 1996 Wiley-Liss, Inc.
-
Anterior commissure of the wallaby (Macropus eugenii): adult morphology and development.
The Journal of Comparative Neurology, 1996Co-Authors: Kenneth W. S. Ashwell, Lauren R. Marotte, Phil M.e. WaiteAbstract:In metatheria, all neo- and paleo-cortical commissural connections are made by the anterior commissure. We have examined the adult morphology of this commissure and its development in a diprotodontid metatherian, the wallaby (Macropus eugenii), at both the light and electron microscope level. The total number of axons in the adult anterior commissure was 21.7 million, of which 55-62% were myelinated. The dorsal two thirds of the commissure, containing neocortical commissural axons, showed a higher percentage of larger, myelinated axons than the ventral one third, which contains paleocortical commissural axons. The commissure also showed a topographical gradient, with cells in the dorsal cortex projecting through the dorsal region of the commissure, the fasciculus aberrans. In the rostrocaudal axis, axons from the frontal cortex tended to pass more anteriorly through the commissure and those from the occipital more posteriorly, but there was extensive overlap of projections from different areas. The gestation length of this wallaby is 28.3 days, and all commissural development occurs postnatally. The anterior commissure first appeared at P (postnatal day) 14, at which time commissural fibres were apparently derived from the external capsule exclusively. Commissural fibres passing through the internal capsule, and joining the anterior commissure via the fasciculus aberrans, were first noted at P18. By that age there were 94,000 to 161,000 axons. Peak axon counts of 50 to 63 million occurred between P100 and P150. The number of growth cones in a single midline section peaked at approximately P114 (480,000) and dropped to 0 by P170. The distribution of growth cones was analysed during the early stages of anterior commissure development (P18, P30, P82). At P18, growth cones were concentrated in the dorsal parts of the commissural bundle, suggesting a ventrodorsal sequence of addition of axons. There was no apparent preferential association of growth cones with the periphery of the commissure or glial structures at any of the three ages examined. The results show that axonal overproduction and regression in cortical commissural connections are features of development in diprotodontid metatheria, as in eutheria.
Michael Archer - One of the best experts on this subject based on the ideXlab platform.
-
Herds over− head: Nimbadon lavarackorum (Diprotodontidae), heavyweight marsu− pial herbivores in the Miocene forests of Australia. PLoS
2016Co-Authors: Karen H Black, Michael Archer, Aaron B. Camens, Suzanne J. HAbstract:The marsupial family Diprotodontidae (Diprotodontia, Vombatiformes) is a group of extinct large-bodied (60–2500 kg) wombat-like herbivores that were common and geographically widespread in Cenozoic fossil deposits of Australia and New Guinea. Typically they are regarded to be gregarious, terrestrial quadrupeds and have been likened in body form among placental groups to sheep, rhinoceros and hippopotami. Arguably, one of the best represented species is the zygomaturine diprotodontid Nimbadon lavarackorum which is known from exceptionally well-preserved cranial and postcranial material from the middle Miocene cave deposit AL90, in the Riversleigh World Heritage Area, northwestern Queensland. Here we describe and functionally analyse the appendicular skeleton of Nimbadon lavarackorum and reveal a far more unique lifestyle for this plesiomorphic and smallest of diprotodontids. Striking similarities are evident between the skeleton of Nimbadon and that of the extant arboreal koala Phascolarctos cinereus, including the powerfully built forelimbs, highly mobile shoulder and elbow joints, proportionately large manus and pes (both with a semi-opposable digit I) and exceedingly large, recurved and laterally compressed claws. Combined with the unique (among australidelphians) proportionately shortened hindlimbs of Nimbadon, these features suggest adept climbing ability, probable suspensory behaviour, and an arboreal lifestyle. At approximately 70 kg, Nimbadon is the largest herbivorous mammal to have occupied the forest canopies of Australia- an ecological niche that is no longer occupied in any Australian ecosystem and one tha
-
Herds Overhead: Nimbadon lavarackorum (Diprotodontidae), Heavyweight Marsupial Herbivores in the Miocene Forests of Australia
PloS one, 2012Co-Authors: Karen H Black, Michael Archer, Aaron B. Camens, Suzanne J. HandAbstract:The marsupial family Diprotodontidae (Diprotodontia, Vombatiformes) is a group of extinct large-bodied (60–2500 kg) wombat-like herbivores that were common and geographically widespread in Cenozoic fossil deposits of Australia and New Guinea. Typically they are regarded to be gregarious, terrestrial quadrupeds and have been likened in body form among placental groups to sheep, rhinoceros and hippopotami. Arguably, one of the best represented species is the zygomaturine diprotodontid Nimbadon lavarackorum which is known from exceptionally well-preserved cranial and postcranial material from the middle Miocene cave deposit AL90, in the Riversleigh World Heritage Area, northwestern Queensland. Here we describe and functionally analyse the appendicular skeleton of Nimbadon lavarackorum and reveal a far more unique lifestyle for this plesiomorphic and smallest of diprotodontids. Striking similarities are evident between the skeleton of Nimbadon and that of the extant arboreal koala Phascolarctos cinereus, including the powerfully built forelimbs, highly mobile shoulder and elbow joints, proportionately large manus and pes (both with a semi-opposable digit I) and exceedingly large, recurved and laterally compressed claws. Combined with the unique (among australidelphians) proportionately shortened hindlimbs of Nimbadon, these features suggest adept climbing ability, probable suspensory behaviour, and an arboreal lifestyle. At approximately 70 kg, Nimbadon is the largest herbivorous mammal to have occupied the forest canopies of Australia - an ecological niche that is no longer occupied in any Australian ecosystem and one that further expands the already significant niche diversity displayed by marsupials during the Cenozoic.
-
New Tertiary Koala (Marsupialia, Phascolarctidae) from Riversleigh, Australia, with a Revision of Phascolarctid Phylogenetics, Paleoecology, and Paleobiodiversity
Journal of Vertebrate Paleontology, 2012Co-Authors: Karen H Black, Michael Archer, Suzanne J. HandAbstract:ABSTRACT Here we describe the most plesiomorphic koala yet known. Priscakoala lucyturnbullae, gen. et sp. nov., is the fourth and largest koala species described from Miocene deposits in the Riversleigh World Heritage area, northern Australia. It is known from a maxilla with M1–3 and isolated M2, M3 or M4 and m1. Relationships within the Diprotodontian suborder Vombatiformes are clarified using cranial and dental characters based on a data set compiled from new and more complete cranial materials for each of the respective vombatiform families. Monophyly of Phascolarctidae is supported by the development of a protostylid and metastylid on m1. Priscakoala lucyturnbullae is the most plesiomorphic phascolarctid. Inclusion in the analysis of the enigmatic Pliocene genus Koobor, currently classified as Vombatiformes incertae sedis, indicates phascolarctomorphian affinities for the genus.
-
the rise of australian marsupials a synopsis of biostratigraphic phylogenetic palaeoecologic and palaeobiogeographic understanding
Earth and Life, 2012Co-Authors: Karen H Black, Suzanne J. Hand, Michael Archer, Henk GodthelpAbstract:The origins, evolution and palaeodiversity of Australia’s unique marsupial fauna are reviewed. Australia’s marsupial fauna is both taxonomically and ecologically diverse comprising four extant orders (Dasyuromorphia, Peramelemorphia, Notoryctemorphia and Diprotodontia) and one extinct order (Yalkaparidontia). Molecular divergence dates estimate a Palaeocene origin for the Australian marsupial orders yet ordinal differentiation is obscured by significant gaps in the fossil record with a single terrestrial mammal-bearing deposit known between the late Cretaceous and the late Oligocene. This deposit, the 55 million-year-old early Eocene Tingamarra Local Fauna of southeastern Queensland, contains Australia’s oldest marsupial (Superorder Australidelphia) as well as taxa tentatively interpreted to represent South American groups (Order Polydolopimorphia). Palaeobiogeographic hypotheses regarding the distribution and interordinal relationships of Australian and South American marsupials are discussed. Dasyuromorphia and Peramelemorphia were possibly also present in the early Eocene, Diprotodontia in at least the late Oligocene and Notoryctemorphia and Yalkaparidontia in the early Miocene. Palaeobiodiversity was highest during the early to middle Miocene as evidenced by a spectacular array of marsupial groups in the rainforest assemblages of the Riversleigh World Heritage Area. The onset of icehouse conditions during the middle Miocene saw significant faunal turnover with loss of many archaic groups and the emergence of a range of modern lineages. Few deposits of late Miocene age are known. Development of Australia’s first grasslands and arid habitats occurred in the Pliocene, accompanied by an explosive radiation of grazing kangaroos. The Pleistocene was characterised by severe and unpredictable climatic conditions and the extinction of the Australian megafauna. Lowered sea levels allowed faunal interchange between mainland Australia and neighbouring New Guinea as well as the arrival of the first humans. Resolution of the role of humans and/or climate change in megafaunal extinction requires more precise dating of late Pleistocene deposits. We reflect on the predictive power of the fossil record to enhance understanding of the effects of climate change and humans on the future of the Australian marsupial fauna.
-
Cranial Anatomy of Oligo-Miocene Koalas (Diprotodontia: Phascolarctidae): Stages in the Evolution of an Extreme Leaf-Eating Specialization
Journal of Vertebrate Paleontology, 2009Co-Authors: Julien Louys, Robin M D Beck, Ken Aplin, Michael ArcherAbstract:ABSTRACT Partial crania of two fossil species of koala (family Phascolarctidae) from Oligo-Miocene deposits in the Riversleigh World Heritage Area, one referable to Litokoala kutjamarpensis and another to Nimiokoala greystanesi, are described. Comparison with the extant koala Phascolarctos cinereus and other Diprotodontian marsupials reveals a high degree of similarity in basicranial morphology between fossil and modern phascolarctids but substantial differences in the architecture of the masticatory system. Key specialisations present in Phascolarctos but absent in both Litokoala and Nimiokoala include forward displacement of the palate, enlargement of the occlusal surface of the molar teeth, thickening of the maxillae above the toothrow with resultant lowering of the occlusal plane of the cheekteeth relative to the glenoid fossa, and a decrease in the size of the pterygoid fossae. These extreme aspects of the cranial morphology of Phacolarctos probably reflect its dependence on eucalypt leaves, a nutrie...