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  • Essays of Robert Louis Stevenson, 5 vols as part of the 40-volume New Edinburgh Edition of the collected works of Robert Louis Stevenson Edinburg University Press
    University of Maryland University College (UMUC), 2012
    Co-Authors: Abrahamson Robert-louis
    Abstract:

    The Essays of Robert Louis Stevenson is the first scholarly Edition of this significant body of work from a writer whose literary and cultural importance is recognized by scholars and critics working in many different fields. The five volumes of Essays will appear (projected date, 2013-14) as the "flagship" volumes of the forty-volume New Edinburgh Edition of the Collected Works of Stevenson (EdRLS), published by the Edinburgh University Press.1 Essays of Robert Louis Stevenson, 5 vols as part of the 40-volume New Edinburgh Edition of the Collected Works of Robert Louis Stevenson Edinburgh University Press Robert-Louis Abrahamson Collegiate Professor University of Maryland University College European Division Abstract The Essays of Robert Louis Stevenson is the first scholarly Edition of this significant body of work from a writer whose literary and cultural importance is recognized by scholars and critics working in many different fields. The five volumes of Essays will appear (projected date, 2013-14) as the "flagship" volumes of the forty-volume New Edinburgh Edition of the Collected Works of Stevenson (EdRLS), published by the Edinburgh University Press. Original features of the Essays volumes will include  examination of all the witness texts including manuscripts, and magazine and volume publications  inclusion of any illustrations originally placed in the magazine versions  some previously unpublished drafted essays  full explanatory notes to clarify Stevenson’s many literary and cultural allusions  summary index to each text and alphabetical index  an assessment of Stevenson’s place in the history of the essay The four co-editors of the Essays are working together to produce the five volumes. I am immediately responsible for Volume 1 (Virginibus Puerisque), and half of Volume 2 2 (Familiar Studies of Men and Books), specifically the essays in that volume about American and Scottish writers. Accompanying the printed Edition will be an electronic Edition of the final texts and the chief witness texts, as well as background material and databases covering the publication history, location of MSS, and other relevant details. This electronic component is pioneering the application of advanced software and data organization to serious scholarly editing. As part of this work, my co-editor Richard Dury and I are serving as guest editors of the Journal of Stevenson Studies, producing an issue of the Journal for Autumn, 2012, containing articles exclusively addressing Stevenson's essays. No scholars or critics before us have given the essays such sustained attention. Aims and Methodology The aim of the Essays volumes was to create several sets of documents:  Copytext of each essay, based upon the most authoritative Early Edition from the period, that is, when the author worked with greatest concentration and effort and was still involved in the process of creation. For the essays collected in volume form by Stevenson himself, the copytext has been taken from the first Edition of the collected volume. For uncollected essays, the copytext has been taken from the periodical publication of the essay or from MS.  List of variants in other versions of each essay produced in Stevenson's lifetime  List emendations to the copytext, based on obvious errors and omissions  Short introduction to each essay, detailing the composition history and any important features  Set of explanatory notes for each essay  Summary for each essay  General Introduction to the five volumes  Introductions to individual volumes, including publishing history, reception, republication history, translations To achieve these aims we employed the electronic procedures pioneered by the EdRLS project. The Essays volumes were in the first wave of production and in many ways served as the test cases for the electronic methodology, which consisted of several steps: 1. Locate copies of the copytexts and variant texts, including MS texts 3 2. Scan the texts to create .pdf files for copytext and all variant copies of each essay. The scans were sometimes requested from the library holding the desired text and sometimes produced in the EdRLS office at the University of Edinburgh. 3. OCR the .pdf file to produce a Word document of the text 4. Proofread the Word document against the scanned .pdf file. This was usually carried out through Skype calls between some of the editors (all based in different countries), one person reading aloud the scanned text, the other checking the OCR text. 5. Using JUXTA software, collate all texts of each essay to identify substantive and accidental variants 6. Submit a list of proposed emendations to the General Editors, who, on a Skype conference call, would give (or withhold) final approval to proposed changes 7. Submit the final copytext, incorporating emendations, to the Technical Editor to be converted to camera-ready format 8. Proofread the camera-ready text 9. Submit Explanatory Notes to fellow editors for discussion before final submission to Technical Editor 10. Proofread camera-ready text of Notes 11. Compile introductory material, in conference with fellow editors 12. Submit introductory material to Technical Editor 13. Proofread final copy before submission to Edinburgh University Press for publication Throughout this process the Essays Editors conducted weekly (sometimes daily) conferences via Skype, shared documents via Google.docs and databases via Skydrive. The editors met together in person once in London, once in Stirling, and once in Edinburgh. Timetable The text of Virginibus Puerisque is now in camera-ready format. The Explanatory Notes and Textual Notes are projected to be completed by November, 2012, and the volume introduction by the end of December. The General Introduction, which will appear in this volume, is projected to be completed by June, 2013. The text of Familiar Studies of Men and Women is in the process of conversion to OCR. The majority of work on this volume, shared between Richard Dury and myself, will be carried out in 2013-14. 4 Volume 3 of the Essays, Memories and Portraits, edited by Alex Thomson, is due in camera-ready format in June, 2013. Volume 4, Uncollected Essays, 1871-1880, edited by Richard Dury, is due in camera-ready copy in January, 2014. Volume 5, Uncollected Essays, 1881-94, edited by Leslie Graham, is due in camera-ready copy in January, 2014. Importance of the new Edition of the Essays Although many of Stevenson's essays have continued to be reprinted since the 1870s and 80s, a great many have never appeared since the last complete Edition in the 1920s, and the 1920s Editions contained many errors in the texts and virtually no background material or explanatory notes. No one has examined the changes made by Stevenson or his editors when the essays first appearing in periodical form were republished in book form. Several essays have not been republished since their first appearance in magazines, or were left in MS at Stevenson's death. Many biographies and critical articles refer to Stevenson's essays, but usually only to provide incidental information about Stevenson's fiction. There have been very few articles and no extended studies of the essays in their own right, despite their literary merits and cultural significance. Stevenson has always remained a popular author and his standing in academic studies has been steadily rising in the past fifteen years. He currently holds a strong place in Scottish Studies, Victorian Studies, Children's literature, Post-colonial literature, South Seas literature, Gothic Studies, and the study of popular fiction. Individual essays have been cited in disciplines as diverse as child psychology, Scottish portrait painting, Californian local history, and the history of urban street lighting. The study of the essay as a literary form in its own right represents a small but strong corner of literary studies, and after a period of neglect Stevenson's essays are again being appreciated for their diversity and their radical contribution in content and style to literary tradition. A conference on The Literary Essay in English, held at Queen Mary College, University of London, in July 2011, recognized this growing importance by including in its program a talk on Stevenson's essays and several references to Stevenson's work in other talks, as well as special mention of our Essays Edition as prominent work in this literary and scholarly field. Volume 9 (2012) of the Journal of Stevenson Studies, guest edited by Richard Dury and myself, contains eleven articles from scholars around the world, addressing many aspects of Stevenson's essays. 5 First page of "Virginibus Puerisque," Cornhill Magazine, August 1876 6 Title page of 1st Edition of Virginibus Puerisque, 1881 7 First page of "Virginibus Puerisque," 1881 (1st Edition) 8 Camera-ready title page of New Edinburgh Edition of Virginibus Puerisque, 2014 9 First page of "Virginibus Puerisque," New Edinburgh Edition, 2014 10 5 Virginibus Puerisque: ‘virginibus puerisque canto’ (‘I sing to maids and boys’; Horace, Odes, 3.1). The same ode is quoted in the essay ‘Charles of Orleans’, which Stevenson was working on at the same time. Falstaff ... Jacques: Falstaff, Henry IV pts 1 and 2 and Merry Wives of Windsor; Mercutio, Romeo and Juliet; Benedick, Much Ado about Nothing; Biron, Love's Labour's Lost; Iago, Othello; Jacques, As You Like It (adapted into French by George Sand, 1856). Panurge: character in Gargantua and Pantagruel (1532-64), a series of five novels by François Rabelais. The Third Book of Pantagruel is largely devoted to discussions about whether Panurge should marry, a question still unsettled at the end. Maître Guérin: comedy by Émile Augier (1864). Maxime de Trailles: cynical aristocrat who appears in several of Balzac’s Comédie Humaine novels; Stevenson’s quotation (‘It’s terrible; every one of us is getting married!’) comes from Le Deputé d'Arcis (1854). 6 Lydgate ... Ladislaw: characters in George Eliot’s Middlemarch (1871). 7 Marcus Aurelius: Roman emperor and philosopher (121-80 CE); his wife Faustina was a woman of ‘wanton levity’, ‘as much celebrated for her gallantries as for her beauty’ (Gibbon, Decline and Fall of the Roman Empire I.IV.i). 8 Hannah Godwin wrote to her brother William: letter of 29 June 1784, read by Stevenson in C. Kegan Paul’s William Godwin: His Friends and Contemporaries (1876, vol. 1, ch. 2, pp. 30-31). First page of Explanatory Notes for "Virginibus Puerisque", New Edinburgh Editio

Carbajal Arizaga G.g. - One of the best experts on this subject based on the ideXlab platform.

  • Barcoding Without Dna? Species Identification Using Near Infrared Spectroscopy
    2015
    Co-Authors: Rodriguez-fernandez J.i., De Carvalho C.j.b., Pasquini C., De Lima K.m.g., Moura M.o., Carbajal Arizaga G.g.
    Abstract:

    Hennig's holomorphology concept defines taxonomy as a process that synthesizes evidence from all relevant comparative sources. One possible source is metabolomics, in which the global metabolic profile is analyzed. An integral metabolic profile can be quickly obtained, nondestructively, through spectroscopy in the near infrared region. Here we use near infrared spectroscopy and chemometry to identify nine species of flies in the genus Neodexiopsis Malloch (Muscidae, Diptera). This genus is the most species-rich of the Muscoidea in the Neotropical region. Identification success demonstrates that near infrared spectroscopy may provide a new source of data to test and organize hypotheses of species delimitation. Comparing near infrared spectroscopy with DNA barcoding, spectroscopy may have even greater conceptual merit as a true barcode of life. Copyright © 2011 · Magnolia Press.29334654Albuquerque, D.D.O., Duas espécies novas de "Neodexiopsis" Mall., 1920 (Diptera, Muscidae) (1956) Revista Brasileira de Biologia, 16, pp. 195-200Albuquerque, D.D.O., Novas espécies de Coenosiinae (Diptera-Muscidae) (1956) Boletim do Museu Nacional. Nova série, Zoologia, 146, pp. 1-23Aldrich, B.T., Maghirang, E.B., Dowell, F.E., Kambhampati, S., Identification of termite species and subspecies of the genus Zootermopsis using near-infrared reflectance spectroscopy (2007) Journal of Insect Science, 7, pp. 1-18Ami, D., Natalello, A., Zullini, A., Dogli, S.M., Fourier transform infrared microspectroscopy as a new tool for nematode studies (2007) FEBS Letters, 576, pp. 297-300Antonialli Jr., W.F., Lima, S.M., Andrade, L.H.C., Suarez, Y.R., Comparative study of the cuticular hydrocarbon in queens, workers and males of Ectatomma vizottoi (Hymenoptera, Formicidae) by Fourier transform-infrared photoacoustic spectroscopy (2007) Genetics and Molecular Research, 6 (3), pp. 492-499. , http://www.funpecrp.com.br/gmr/year2007/vol3-6/pdf/GMR0324.pdfAntonialli Jr., W.F., Súarez, Y.R., Izida, T., Andrade, L.H.C., Lima, S.M., Intra-and interspecifc variation of cuticular hydrocarbon composition in two Ectatomma species (Hymenoptera: Formicidae) based on Fourier transform infrared photoacoustic spectroscopy (2008) Genetics and Molecular Research, 7, pp. 559-566Benedict, A.A., Group classification of virus preparations by infrared spectroscopy (1955) Journal of Bacteriology, 69, pp. 264-269The Unscrambler™, , CAMO Software AS, Complete software package for Multivariate Data Analysis and Experimental Design. 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Available from, (Accessed 13 november 2009)Chopin, T., Kerin, B.F., Mazerolle, R., Phycocolloid chemistry as a taxonomic indicator of phylogeny in the Gigartinales, Rhodophyceae: A review and current developments using Fourier transform infrared diffuse reflectance spectroscopy (1999) Phycological Research, 47 (3), pp. 167-188. , DOI 10.1046/j.1440-1835.1999.00170.xCole, T.J., Ram, M.S., Dowell, F.E., Omwega, C.O., Overholt, W.A., Ramaswamy, S.B., Near-infrared spectroscopic method to identify Cotesia flavipes and Cotesia sesamiae (Hymenoptera: Braconidae) (2003) Annals of the Entomological Society of America, 96 (6), pp. 865-869Costacurta, N.C., Marinoni, R.C., De Carvalho, C.J.B., Fauna de Muscidae (Diptera) em trĉs localidades do Estado de Paraná, capturada com armadilha Malaise (2003) Revista Brasileira de Entomologia, 47, pp. 389-397Costacurta, N.C., Couri, M.S., De Carvalho, C.J.B., Descriptions of new species with a key to identification of the genus Neodexiopsis Malloch (Diptera, Muscidae) in Brazil (2005) Revista Brasileira de Entomologia, 49, pp. 353-366Couri, M.S., Albuquerque, D.D.O., Estudos sobre Neodexiopsis Malloch, 1920 com notas nomenclaturais sobre Coenosiinae (Diptera, Muscidae) (1979) Revista Brasileira de Biologia, 39, pp. 499-517Cvacka, J., Jiros, P., Obotnik, J., Hanus, R., Svatos, A., Analysis of insect cuticular hydrocarbons using matrix-assisted laser desorption/ionization mass spectrometry (2006) Journal of Chemical Ecology, 32, pp. 409-434Dayrat, B., Towards integrative taxonomy (2005) Biological Journal of the Linnean Society, 85 (3), pp. 407-415. , DOI 10.1111/j.1095-8312.2005.00503.xDharmaraj, S., Suhaimi Jamaludin, A., Mohammad Razak, H., Valliappan, R., Atinah Ahmad, N., Lay Harn, G., Ismail, Z., The classification of Phyllanthus niruri Linn. According to location by infrared spectroscopy (2006) Vibrational Spectroscopy, 41, pp. 68-72Dowell, F.E., Throne, J.E., Wang, D., Baker, J.E., Identifying stored-grain insects using near-infrared spectroscopy (1999) Journal of Economic Entomology, 92 (1), pp. 165-169Dowell, F.E., Parker, A.G., Benedict, M.Q., Robinson, A.S., Broce, A.B., Wirtz, R.A., Sex separation of tsetse fly pupae using near-infrared spectroscopy (2005) Bulletin of Entomological Research, 95 (3), pp. 249-257. , DOI 10.1079/BER2004357Downey, G., McElhinney, J., Fearn, T., Species identification in selected raw homogenized meats by reflectance spectroscopy in the mid-infrared, near-infrared, and visible ranges (2000) Applied Spectroscopy, 54, pp. 894-899Eriksson, L., Antti, H., Gottfries, J., Holmes, E., Johansson, E., Lindgran, F., Long, I., Wold, S., Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabolomics (gpm) (2004) Analytical and Bioanalytical Chemistry, 380, pp. 419-429Fiehn, O., Kristal, B., Van Ommen, B., Sumner, L.W., Sansone, S.-A., Taylor, C., Hardy, N., Kaddurah-Daouk, R., Establishing reporting standards for metabolomic and metabonomic studies: A call for participation (2006) OMICS A Journal of Integrative Biology, 10 (2), pp. 158-163. , DOI 10.1089/omi.2006.10.158Girija, K.R., Sasikala, C., Ramana, C.V., Spröer, C., Takaichi, S., Thiel, V., Imhoff, J.F., Rhodobacter johrii sp. nov., an endospore-producing cryptic species isolated from semi-arid tropical soils (2010) International Journal of Systematic and Evolutionary Microbiology, 60, pp. 2099-2107Hall, M.H., Dutro, S.M., Klowed, M.J., Determination by near-Infrared reflectance spectroscopy of mosquito (Diptera: Culicidae) bIoodmeal size (1990) Journal of Medical Entomology, 27, pp. 76-79Hennig, W., (1966) Phylogenetic Systematics, pp. 1-514. , University of Illinois Press, UrbanaHubert, M., Engelen, S., Fast cross-validation of high-breakdown resampling methods for PCA (2007) Computational Statistics and Data Analysis, 51 (10), pp. 5013-5024. , DOI 10.1016/j.csda.2006.08.031, PII S016794730600291XHimmelreich, U., Somorjai, R.L., Dolenko, B., Lee, O.C., Daniel, H.-M., Murray, R., Mountford, C.E., Sorrell, T.C., Rapid identification of Candida species by using nuclear magnetic resonance spectroscopy and a statistical classification strategy (2003) Applied and Environmental Microbiology, 69 (8), pp. 4566-4574. , DOI 10.1128/AEM.69.8.4566-4574.2003Kim, S.W., Ban, S.H., Chung, H., Cho, S., Chung, H.J., Choi, P.S., Yoo, O.J., Liu, J.R., Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data (2004) Plant Cell Reports, 23 (4), pp. 246-250. , DOI 10.1007/s00299-004-0811-1Klarica, J., Bittner, L., Pallua, J., Pezzei, C., Huck-Pezzei, V., Dowell, F., Schied, J., Steiner, F.M., Near-infrared imaging spectroscopy as a tool to discriminate two cryptic tetramorium ant species (2011) Journal of Chemical Ecology, , http://www.springerlink.com/content/m768755n0p341114/, Available from, (Accessed 1 june 2011)Klaus, A.V., Schawaroch, V., Novel methodology utilizing confocal laser scanning microscopy for systematic analysis in arthropods (Insecta) (2006) Integrative and Comparative Biology, 46 (2), pp. 207-214. , DOI 10.1093/icb/icj015Kron, P., Suda, J., Husband, B.C., Applications of flow cytometry to evolutionary and population biology (2007) Annual Review of Ecology Evolution and Systematics, 38, pp. 847-76Lai, S., Goodacre, R., Manchester, L.N., Whole-organism Fingerprinting of the Genus Carnobacterium using Fourier Transform Infrared Spectroscopy (FT-IR) (2004) Systematic and Applied Microbiology, 27 (2), pp. 186-191. , DOI 10.1078/072320204322881808Landis, J.R., Koch, G.G., The measurement of observer agreement for categorical data (1977) Biometrics, 33 (1), pp. 159-174Lazzari, S.M.N., Ceruti, F.C., Rodriguez-Fernandez, J.I., Opit, G., Lazzari, F.A., Intra and interspecific variation assessment in Psocoptera using near spectroscopy (2010) Julius-Kühn-Archiv, 425, pp. 139-144Malloch, J.R., Muscidae (1934) Diptera of Patagonia and South Chile, 7, pp. 171-346Marinoni, R.C., Dutra, R.R.C., Levantamento da fauna entomológica no estado de Paraná. Introdução. Situações climática e florística de oito pontos de coleta. Dados faunísticos de agosto de 1986 a julho de 1987 (1991) Revista Brasileira de Zoologia, 8, pp. 31-73Mayagaya, V.S., Michel, K., Benedict, M.Q., Killeen, G.F., Wirtz, R.A., Ferguson, H.M., Dowell, F.E., Non-destructive determination of age and species of Anopheles gambiae s.l. using near-infrared spectroscopy (2009) American Journal of Tropical. Medicine and Hygiene, 81, pp. 622-630(2009) Information About Metabolomics in the Life Sciences, , http://129.128.185.121/metabolomics_society/, MetabolomicsSociety, Ardmore, Oklahoma. 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Meyers (ed.), John Wiley & Sons, Ltd., ChichesterNewey, P.S., Robson, S.K.A., Crozier, R.H., Near-infrared spectroscopy identifies the colony and nest of origin of weaver ants, Oecophylla smaragdina (2008) Insectes Sociaux, 55, pp. 171-175Norgaard, L., Saudland, A., Wagner, J., Nielsen, J.P., Munck, L., Engelsen, S.B., Interval partial least-squares regression (iPLS): A comparative chemometric study with an example from near-infrared spectroscopy (2000) Applied Spectroscopy, 54 (3), pp. 413-419Oberreuter, H., Seiler, H., Scherer, S., Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy (2002) International Journal of Systematic and Evolutionary Microbiology, 52 (1), pp. 91-100Paliwal, J., Wang, W., Symons, S.J., Karunakaran, C., Insect species and infestation level determination in stored wheat using near-infrared spectroscopy (2004) Canadian Biosystems Engineering, 46, pp. 717-724Pasquini, C., Near infrared spectroscopy: Fundamentals practical aspects and analytical applications (2003) Journal of the Brazilian Chemical Society, 14, pp. 138-219Penney, D., Dierick, M., Cnudde, V., Masschaele, B., Vlassenbroeck, J., Van Hoorebeke, L., Jacobs, P., First fossil micropholcommatidae (araneae), imaged in Eocene Paris amber using X-Ray computed tomography (2007) Zootaxa, (1623), pp. 47-53Perez-Mendoza, J., Dowell, F.E., Broce, A.B., Throne, J.E., Wirtz, R.A., Xie, F., Fabrick, J.A., Baker, J.E., Chronological age-grading of house flies by using near-infrared spectroscopy (2002) Journal of Medical Entomology, 39 (3), pp. 499-508Perez-Mendoza, J., Throne, J.E., Dowell, F.E., Baker, J.E., Detection of insect fragments in wheat flour by near-infrared spectroscopy (2003) Journal of Stored Products Research, 39 (3), pp. 305-312. , DOI 10.1016/S0022-474X(02)00021-8, PII S0022474X02000218Perez-Mendoza, J., Throne, J.E., Dowell, F.E., Baker, J.E., Chronological age-grading of three species of stored-product beetles by using near-infrared spectroscopy (2004) Journal of Economic Entomology, 97 (3), pp. 1159-1167Puskar, L., Tuckermann, R., Frosch, T., Popp, J., Ly, V., McNaughton, D., Wood, B.R., Raman acoustic levitation spectroscopy of red blood cells and Plasmodium falciparum trophozoites (2007) Lab on a Chip - Miniaturisation for Chemistry and Biology, 7 (9), pp. 1125-1131. , DOI 10.1039/b706997aRatnasingham, S., Hebert, P., The barcode of life database (2007) Molecular Ecology Notes, 7, pp. 355-364Raxworthy, C.J., Ingram, C.M., Rabibisoa, N., Pearson, R.G., Applications of ecological niche modeling for species delimitation: A review and empirical evaluation using day geckos (Phelsuma) from Madagascar (2008) Systematic Biology, 56, pp. 907-923Rodríguez-Fernández, J.I., De Carvalho, C.J.B., Moura, M.O., Estrutura de assembléias de Muscidae (Diptera) noParaná: Uma análise por modelos nulos (2006) Revista Brasileira de Entomologia, 50, pp. 93-100Sene, C.F.B., McCann, M.C., Wilson, R.H., Grinter, R., Fourier-transform Raman and Fourier-transform infrared spectroscopy: An investigation of five higher plant cell walls and their components (1994) Plant Physiology, 106 (4), pp. 1623-1631Inc. 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DOI: 10.1073/pnas.1017393108 available fromSnyder, F.M., Notes and descriptions of some Neotropical Muscidae (Diptera) (1957) Bulletin of the American Museum of Natural History, 113, pp. 437-490. , [Note correction on p. viii of the journal.]Stackebrandt, E., Frederiksen, W., Garrity, G.M., Grimont, P.A.D., Kampfer, P., Maiden, M.C.J., Nesme, X., Whitman, W.B., Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology (2002) International Journal of Systematic and Evolutionary Microbiology, 52 (3), pp. 1043-1047. , DOI 10.1099/ijs.0.02360-0Timmins, E.M., Howell, S.A., Alsberg, B.K., Noble, W.C., Goodacre, R., Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy (1998) Journal of Clinical Microbiology, 36 (2), pp. 367-374Tolleson, D.R., Randel, R.D., Stuth, J.W., Neuendorff, D.A., Determination of sex and species in red and fallow deer by near infrared reflectance spectroscopy of the faeces (2005) Small Ruminant Research, 57 (2-3), pp. 141-150. , DOI 10.1016/j.smallrumres.2004.06.020Wenning, M., Seiler, H., Scherer, S., Fourier-transform infrared microspectroscopy, a novel and rapid tool for identification of yeasts (2002) Applied and Environmental Microbiology, 68 (10), pp. 4717-4721. , DOI 10.1128/AEM.68.10.4717-4721.2002Wenning, M., Theilmann, V., Scherer, S., Rapid analysis of two food-borne microbial communities at the species level by Fourier-transform infrared microspectroscopy (2006) Environmental Microbiology, 5, pp. 848-857Wheeler, Q.D., Undisciplined thinking: Morphology and Hennig's unfinished revolution (2008) Systematic Entomology, 33, pp. 2-7Winder, C.L., Carr, E., Goodacre, R., Seviour, R., The rapid identification of Acinetobacter species using Fourier transform infrared spectroscopy (2004) Journal of Applied Microbiology, 96 (2), pp. 328-339. , DOI 10.1046/j.1365-2672.2003.02154.xZhao, H., Parry, R.L., Ellis, D.I., Griffith, G.W., Goodacre, R., The rapid differentiation of Streptomyces isolates using Fourier transform infrared spectroscopy (2006) Vibrational Spectroscopy, 40 (2), pp. 213-218. , DOI 10.1016/j.vibspec.2005.09.006, PII S092420310500135

Rodriguez-fernandez J.i. - One of the best experts on this subject based on the ideXlab platform.

  • Barcoding Without Dna? Species Identification Using Near Infrared Spectroscopy
    2015
    Co-Authors: Rodriguez-fernandez J.i., De Carvalho C.j.b., Pasquini C., De Lima K.m.g., Moura M.o., Carbajal Arizaga G.g.
    Abstract:

    Hennig's holomorphology concept defines taxonomy as a process that synthesizes evidence from all relevant comparative sources. One possible source is metabolomics, in which the global metabolic profile is analyzed. An integral metabolic profile can be quickly obtained, nondestructively, through spectroscopy in the near infrared region. Here we use near infrared spectroscopy and chemometry to identify nine species of flies in the genus Neodexiopsis Malloch (Muscidae, Diptera). This genus is the most species-rich of the Muscoidea in the Neotropical region. Identification success demonstrates that near infrared spectroscopy may provide a new source of data to test and organize hypotheses of species delimitation. Comparing near infrared spectroscopy with DNA barcoding, spectroscopy may have even greater conceptual merit as a true barcode of life. Copyright © 2011 · Magnolia Press.29334654Albuquerque, D.D.O., Duas espécies novas de "Neodexiopsis" Mall., 1920 (Diptera, Muscidae) (1956) Revista Brasileira de Biologia, 16, pp. 195-200Albuquerque, D.D.O., Novas espécies de Coenosiinae (Diptera-Muscidae) (1956) Boletim do Museu Nacional. Nova série, Zoologia, 146, pp. 1-23Aldrich, B.T., Maghirang, E.B., Dowell, F.E., Kambhampati, S., Identification of termite species and subspecies of the genus Zootermopsis using near-infrared reflectance spectroscopy (2007) Journal of Insect Science, 7, pp. 1-18Ami, D., Natalello, A., Zullini, A., Dogli, S.M., Fourier transform infrared microspectroscopy as a new tool for nematode studies (2007) FEBS Letters, 576, pp. 297-300Antonialli Jr., W.F., Lima, S.M., Andrade, L.H.C., Suarez, Y.R., Comparative study of the cuticular hydrocarbon in queens, workers and males of Ectatomma vizottoi (Hymenoptera, Formicidae) by Fourier transform-infrared photoacoustic spectroscopy (2007) Genetics and Molecular Research, 6 (3), pp. 492-499. , http://www.funpecrp.com.br/gmr/year2007/vol3-6/pdf/GMR0324.pdfAntonialli Jr., W.F., Súarez, Y.R., Izida, T., Andrade, L.H.C., Lima, S.M., Intra-and interspecifc variation of cuticular hydrocarbon composition in two Ectatomma species (Hymenoptera: Formicidae) based on Fourier transform infrared photoacoustic spectroscopy (2008) Genetics and Molecular Research, 7, pp. 559-566Benedict, A.A., Group classification of virus preparations by infrared spectroscopy (1955) Journal of Bacteriology, 69, pp. 264-269The Unscrambler™, , CAMO Software AS, Complete software package for Multivariate Data Analysis and Experimental Design. Version 6. 0(2008) Consortium for the Barcoding of the Life, , http://barcoding.si.edu/DNAbarcoding.htm, CBOL, Washington, DC. 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According to location by infrared spectroscopy (2006) Vibrational Spectroscopy, 41, pp. 68-72Dowell, F.E., Throne, J.E., Wang, D., Baker, J.E., Identifying stored-grain insects using near-infrared spectroscopy (1999) Journal of Economic Entomology, 92 (1), pp. 165-169Dowell, F.E., Parker, A.G., Benedict, M.Q., Robinson, A.S., Broce, A.B., Wirtz, R.A., Sex separation of tsetse fly pupae using near-infrared spectroscopy (2005) Bulletin of Entomological Research, 95 (3), pp. 249-257. , DOI 10.1079/BER2004357Downey, G., McElhinney, J., Fearn, T., Species identification in selected raw homogenized meats by reflectance spectroscopy in the mid-infrared, near-infrared, and visible ranges (2000) Applied Spectroscopy, 54, pp. 894-899Eriksson, L., Antti, H., Gottfries, J., Holmes, E., Johansson, E., Lindgran, F., Long, I., Wold, S., Using chemometrics for navigating in the large data sets of genomics, proteomics, and metabolomics (gpm) (2004) Analytical and Bioanalytical Chemistry, 380, pp. 419-429Fiehn, O., Kristal, B., Van Ommen, B., Sumner, L.W., Sansone, S.-A., Taylor, C., Hardy, N., Kaddurah-Daouk, R., Establishing reporting standards for metabolomic and metabonomic studies: A call for participation (2006) OMICS A Journal of Integrative Biology, 10 (2), pp. 158-163. , DOI 10.1089/omi.2006.10.158Girija, K.R., Sasikala, C., Ramana, C.V., Spröer, C., Takaichi, S., Thiel, V., Imhoff, J.F., Rhodobacter johrii sp. nov., an endospore-producing cryptic species isolated from semi-arid tropical soils (2010) International Journal of Systematic and Evolutionary Microbiology, 60, pp. 2099-2107Hall, M.H., Dutro, S.M., Klowed, M.J., Determination by near-Infrared reflectance spectroscopy of mosquito (Diptera: Culicidae) bIoodmeal size (1990) Journal of Medical Entomology, 27, pp. 76-79Hennig, W., (1966) Phylogenetic Systematics, pp. 1-514. , University of Illinois Press, UrbanaHubert, M., Engelen, S., Fast cross-validation of high-breakdown resampling methods for PCA (2007) Computational Statistics and Data Analysis, 51 (10), pp. 5013-5024. , DOI 10.1016/j.csda.2006.08.031, PII S016794730600291XHimmelreich, U., Somorjai, R.L., Dolenko, B., Lee, O.C., Daniel, H.-M., Murray, R., Mountford, C.E., Sorrell, T.C., Rapid identification of Candida species by using nuclear magnetic resonance spectroscopy and a statistical classification strategy (2003) Applied and Environmental Microbiology, 69 (8), pp. 4566-4574. , DOI 10.1128/AEM.69.8.4566-4574.2003Kim, S.W., Ban, S.H., Chung, H., Cho, S., Chung, H.J., Choi, P.S., Yoo, O.J., Liu, J.R., Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data (2004) Plant Cell Reports, 23 (4), pp. 246-250. , DOI 10.1007/s00299-004-0811-1Klarica, J., Bittner, L., Pallua, J., Pezzei, C., Huck-Pezzei, V., Dowell, F., Schied, J., Steiner, F.M., Near-infrared imaging spectroscopy as a tool to discriminate two cryptic tetramorium ant species (2011) Journal of Chemical Ecology, , http://www.springerlink.com/content/m768755n0p341114/, Available from, (Accessed 1 june 2011)Klaus, A.V., Schawaroch, V., Novel methodology utilizing confocal laser scanning microscopy for systematic analysis in arthropods (Insecta) (2006) Integrative and Comparative Biology, 46 (2), pp. 207-214. , DOI 10.1093/icb/icj015Kron, P., Suda, J., Husband, B.C., Applications of flow cytometry to evolutionary and population biology (2007) Annual Review of Ecology Evolution and Systematics, 38, pp. 847-76Lai, S., Goodacre, R., Manchester, L.N., Whole-organism Fingerprinting of the Genus Carnobacterium using Fourier Transform Infrared Spectroscopy (FT-IR) (2004) Systematic and Applied Microbiology, 27 (2), pp. 186-191. , DOI 10.1078/072320204322881808Landis, J.R., Koch, G.G., The measurement of observer agreement for categorical data (1977) Biometrics, 33 (1), pp. 159-174Lazzari, S.M.N., Ceruti, F.C., Rodriguez-Fernandez, J.I., Opit, G., Lazzari, F.A., Intra and interspecific variation assessment in Psocoptera using near spectroscopy (2010) Julius-Kühn-Archiv, 425, pp. 139-144Malloch, J.R., Muscidae (1934) Diptera of Patagonia and South Chile, 7, pp. 171-346Marinoni, R.C., Dutra, R.R.C., Levantamento da fauna entomológica no estado de Paraná. Introdução. Situações climática e florística de oito pontos de coleta. Dados faunísticos de agosto de 1986 a julho de 1987 (1991) Revista Brasileira de Zoologia, 8, pp. 31-73Mayagaya, V.S., Michel, K., Benedict, M.Q., Killeen, G.F., Wirtz, R.A., Ferguson, H.M., Dowell, F.E., Non-destructive determination of age and species of Anopheles gambiae s.l. using near-infrared spectroscopy (2009) American Journal of Tropical. Medicine and Hygiene, 81, pp. 622-630(2009) Information About Metabolomics in the Life Sciences, , http://129.128.185.121/metabolomics_society/, MetabolomicsSociety, Ardmore, Oklahoma. 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Meyers (ed.), John Wiley & Sons, Ltd., ChichesterNewey, P.S., Robson, S.K.A., Crozier, R.H., Near-infrared spectroscopy identifies the colony and nest of origin of weaver ants, Oecophylla smaragdina (2008) Insectes Sociaux, 55, pp. 171-175Norgaard, L., Saudland, A., Wagner, J., Nielsen, J.P., Munck, L., Engelsen, S.B., Interval partial least-squares regression (iPLS): A comparative chemometric study with an example from near-infrared spectroscopy (2000) Applied Spectroscopy, 54 (3), pp. 413-419Oberreuter, H., Seiler, H., Scherer, S., Identification of coryneform bacteria and related taxa by Fourier-transform infrared (FT-IR) spectroscopy (2002) International Journal of Systematic and Evolutionary Microbiology, 52 (1), pp. 91-100Paliwal, J., Wang, W., Symons, S.J., Karunakaran, C., Insect species and infestation level determination in stored wheat using near-infrared spectroscopy (2004) Canadian Biosystems Engineering, 46, pp. 717-724Pasquini, C., Near infrared spectroscopy: Fundamentals practical aspects and analytical applications (2003) Journal of the Brazilian Chemical Society, 14, pp. 138-219Penney, D., Dierick, M., Cnudde, V., Masschaele, B., Vlassenbroeck, J., Van Hoorebeke, L., Jacobs, P., First fossil micropholcommatidae (araneae), imaged in Eocene Paris amber using X-Ray computed tomography (2007) Zootaxa, (1623), pp. 47-53Perez-Mendoza, J., Dowell, F.E., Broce, A.B., Throne, J.E., Wirtz, R.A., Xie, F., Fabrick, J.A., Baker, J.E., Chronological age-grading of house flies by using near-infrared spectroscopy (2002) Journal of Medical Entomology, 39 (3), pp. 499-508Perez-Mendoza, J., Throne, J.E., Dowell, F.E., Baker, J.E., Detection of insect fragments in wheat flour by near-infrared spectroscopy (2003) Journal of Stored Products Research, 39 (3), pp. 305-312. , DOI 10.1016/S0022-474X(02)00021-8, PII S0022474X02000218Perez-Mendoza, J., Throne, J.E., Dowell, F.E., Baker, J.E., Chronological age-grading of three species of stored-product beetles by using near-infrared spectroscopy (2004) Journal of Economic Entomology, 97 (3), pp. 1159-1167Puskar, L., Tuckermann, R., Frosch, T., Popp, J., Ly, V., McNaughton, D., Wood, B.R., Raman acoustic levitation spectroscopy of red blood cells and Plasmodium falciparum trophozoites (2007) Lab on a Chip - Miniaturisation for Chemistry and Biology, 7 (9), pp. 1125-1131. , DOI 10.1039/b706997aRatnasingham, S., Hebert, P., The barcode of life database (2007) Molecular Ecology Notes, 7, pp. 355-364Raxworthy, C.J., Ingram, C.M., Rabibisoa, N., Pearson, R.G., Applications of ecological niche modeling for species delimitation: A review and empirical evaluation using day geckos (Phelsuma) from Madagascar (2008) Systematic Biology, 56, pp. 907-923Rodríguez-Fernández, J.I., De Carvalho, C.J.B., Moura, M.O., Estrutura de assembléias de Muscidae (Diptera) noParaná: Uma análise por modelos nulos (2006) Revista Brasileira de Entomologia, 50, pp. 93-100Sene, C.F.B., McCann, M.C., Wilson, R.H., Grinter, R., Fourier-transform Raman and Fourier-transform infrared spectroscopy: An investigation of five higher plant cell walls and their components (1994) Plant Physiology, 106 (4), pp. 1623-1631Inc. JMP™. Statistical Package, , SAS Institute, Version 3. 1Shevtsova, E., Hansson, C., Janzen, D.H., Kjærandsen, J., Stable structural color patterns displayed on transparent insect wings (2011) Proceedings of the National, , www.pnas.org/cgi/doi/10.1073/pnas.1017393108, Academy of Science Early Edition. DOI: 10.1073/pnas.1017393108 available fromSnyder, F.M., Notes and descriptions of some Neotropical Muscidae (Diptera) (1957) Bulletin of the American Museum of Natural History, 113, pp. 437-490. , [Note correction on p. viii of the journal.]Stackebrandt, E., Frederiksen, W., Garrity, G.M., Grimont, P.A.D., Kampfer, P., Maiden, M.C.J., Nesme, X., Whitman, W.B., Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology (2002) International Journal of Systematic and Evolutionary Microbiology, 52 (3), pp. 1043-1047. , DOI 10.1099/ijs.0.02360-0Timmins, E.M., Howell, S.A., Alsberg, B.K., Noble, W.C., Goodacre, R., Rapid differentiation of closely related Candida species and strains by pyrolysis-mass spectrometry and Fourier transform-infrared spectroscopy (1998) Journal of Clinical Microbiology, 36 (2), pp. 367-374Tolleson, D.R., Randel, R.D., Stuth, J.W., Neuendorff, D.A., Determination of sex and species in red and fallow deer by near infrared reflectance spectroscopy of the faeces (2005) Small Ruminant Research, 57 (2-3), pp. 141-150. , DOI 10.1016/j.smallrumres.2004.06.020Wenning, M., Seiler, H., Scherer, S., Fourier-transform infrared microspectroscopy, a novel and rapid tool for identification of yeasts (2002) Applied and Environmental Microbiology, 68 (10), pp. 4717-4721. , DOI 10.1128/AEM.68.10.4717-4721.2002Wenning, M., Theilmann, V., Scherer, S., Rapid analysis of two food-borne microbial communities at the species level by Fourier-transform infrared microspectroscopy (2006) Environmental Microbiology, 5, pp. 848-857Wheeler, Q.D., Undisciplined thinking: Morphology and Hennig's unfinished revolution (2008) Systematic Entomology, 33, pp. 2-7Winder, C.L., Carr, E., Goodacre, R., Seviour, R., The rapid identification of Acinetobacter species using Fourier transform infrared spectroscopy (2004) Journal of Applied Microbiology, 96 (2), pp. 328-339. , DOI 10.1046/j.1365-2672.2003.02154.xZhao, H., Parry, R.L., Ellis, D.I., Griffith, G.W., Goodacre, R., The rapid differentiation of Streptomyces isolates using Fourier transform infrared spectroscopy (2006) Vibrational Spectroscopy, 40 (2), pp. 213-218. , DOI 10.1016/j.vibspec.2005.09.006, PII S092420310500135

Jamie S. Barkin - One of the best experts on this subject based on the ideXlab platform.

  • Guidelines for Prevention, Surveillance, Diagnosis, and Treatment, in this New Era of More Virulent Strains of Antibiotic Associated Diarrhea (AAD),
    2015
    Co-Authors: Clostridium Difficile-associated, Clostridium Difficile Colitis, Perry Hookman, Jamie S. Barkin
    Abstract:

    reported that in the past Clostridium difficile-associated diseases which usually affected hospital patients, are now appearing in cases of relatively healthy adults, including some who have not even been exposed to a hospital. In the same month The New England Journal of Medicine printed an Early Edition with several reports suggesting that not only is the rate of disease associated with C. difficile increasing, but a previously uncom-mon strain of C. difficile has been found. The new found strain of C. difficile has varia-tions in toxin genes and is more resistant to fluoroquinolones and has emerged as a cause of geographically dispersed outbreaks of Antibiotic Associated Diarrhea (AAD), specif-ically C. difficile diseases (CDD), and Clostridium Difficile-Associated Diarrhea (CDAD). Bacteria are constantly mutating to become resistant to antibiotics. These more virulent toxin producing C. difficile infections include CDAD, C. difficile-associated colitis or pseudomembranous colitis (CDAC). This latter can progress to toxic megacolon (TM). CDAC is increasing in frequency and severity. C. difficile also accounts for an unknown but increasing percentage of community acquired diarrhea. Fluoroquinolones, espe-cially C-8-methoxy fluoroquinolones like moxifloxacin and gatifloxacin have been (continued on page 68

De Carvalho C.j.b. - One of the best experts on this subject based on the ideXlab platform.

  • Barcoding Without Dna? Species Identification Using Near Infrared Spectroscopy
    2015
    Co-Authors: Rodriguez-fernandez J.i., De Carvalho C.j.b., Pasquini C., De Lima K.m.g., Moura M.o., Carbajal Arizaga G.g.
    Abstract:

    Hennig's holomorphology concept defines taxonomy as a process that synthesizes evidence from all relevant comparative sources. One possible source is metabolomics, in which the global metabolic profile is analyzed. An integral metabolic profile can be quickly obtained, nondestructively, through spectroscopy in the near infrared region. Here we use near infrared spectroscopy and chemometry to identify nine species of flies in the genus Neodexiopsis Malloch (Muscidae, Diptera). This genus is the most species-rich of the Muscoidea in the Neotropical region. Identification success demonstrates that near infrared spectroscopy may provide a new source of data to test and organize hypotheses of species delimitation. Comparing near infrared spectroscopy with DNA barcoding, spectroscopy may have even greater conceptual merit as a true barcode of life. Copyright © 2011 · Magnolia Press.29334654Albuquerque, D.D.O., Duas espécies novas de "Neodexiopsis" Mall., 1920 (Diptera, Muscidae) (1956) Revista Brasileira de Biologia, 16, pp. 195-200Albuquerque, D.D.O., Novas espécies de Coenosiinae (Diptera-Muscidae) (1956) Boletim do Museu Nacional. Nova série, Zoologia, 146, pp. 1-23Aldrich, B.T., Maghirang, E.B., Dowell, F.E., Kambhampati, S., Identification of termite species and subspecies of the genus Zootermopsis using near-infrared reflectance spectroscopy (2007) Journal of Insect Science, 7, pp. 1-18Ami, D., Natalello, A., Zullini, A., Dogli, S.M., Fourier transform infrared microspectroscopy as a new tool for nematode studies (2007) FEBS Letters, 576, pp. 297-300Antonialli Jr., W.F., Lima, S.M., Andrade, L.H.C., Suarez, Y.R., Comparative study of the cuticular hydrocarbon in queens, workers and males of Ectatomma vizottoi (Hymenoptera, Formicidae) by Fourier transform-infrared photoacoustic spectroscopy (2007) Genetics and Molecular Research, 6 (3), pp. 492-499. , http://www.funpecrp.com.br/gmr/year2007/vol3-6/pdf/GMR0324.pdfAntonialli Jr., W.F., Súarez, Y.R., Izida, T., Andrade, L.H.C., Lima, S.M., Intra-and interspecifc variation of cuticular hydrocarbon composition in two Ectatomma species (Hymenoptera: Formicidae) based on Fourier transform infrared photoacoustic spectroscopy (2008) Genetics and Molecular Research, 7, pp. 559-566Benedict, A.A., Group classification of virus preparations by infrared spectroscopy (1955) Journal of Bacteriology, 69, pp. 264-269The Unscrambler™, , CAMO Software AS, Complete software package for Multivariate Data Analysis and Experimental Design. 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