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John F Leslie - One of the best experts on this subject based on the ideXlab platform.

  • Methods for detecting chromosome rearrangements in Gibberella zeae
    Cereal Research Communications, 2008
    Co-Authors: Robert L. Bowden, John F Leslie, Jungkwan Lee, Irazema Fuentes-bueno, Yin-won Lee
    Abstract:

    Chromosome rearrangements between fungal strains may reduce fertility in sexual crosses through the production of genetically inviable recombinant progeny. As such, rearrangements can be important postzygotic reproductive barriers that contribute to the speciation process. The presence of chromosome rearrangements in crosses with Gibberella zeae was tested by counting asci with 8, 6, 4, or 2 viable ascospores. Counts were made by observing rosettes of asci extruded from crushed perithecia and by observing unordered ascospore tetrads ejected onto agar slabs from mature perithecia. The two methods gave similar results. Self-fertilized cultures served as controls and produced the normal eight ascospores per ascus in >98% of cases. Crosses with strains known to carry chromosome rearrangements produced significant frequencies of asci with 6, 4, or 2 ascospores, as expected. These results suggest that these methods will be useful to survey populations of G. zeae for chromosome rearrangements.

  • Genetic Structure of Atmospheric Populations of Gibberella zeae
    Phytopathology, 2006
    Co-Authors: David G. Schmale, Kurt A Zeller, John F Leslie, Amgad A. Saleh, Elson J. Shields, Gary C Bergstrom
    Abstract:

    Schmale, D. G., III, Leslie, J. F., Zeller, K. A., Saleh, A. A., Shields, E. J., and Bergstrom, G. C. 2006. Genetic structure of atmospheric populations of Gibberella zeae. Phytopathology 96:1021-1026. Gibberella zeae, causal agent of Fusarium head blight (FHB) of wheat and barley and Gibberella ear rot (GER) of corn, may be transported over long distances in the atmosphere. Epidemics of FHB and GER may be initiated by regional atmospheric sources of inoculum of G. zeae; however, little is known about the origin of inoculum for these epidemics. We tested the hypothesis that atmospheric populations of G. zeae are genetically diverse by determining the genetic structure of New York atmospheric populations (NYAPs) of G. zeae, and comparing them with populations of G. zeae collected from seven different states in the northern United States. Viable, airborne spores of G. zeae were collected in rotational (lacking any apparent within-field inoculum sources of G. zeae) wheat and corn fields in Aurora, NY in May through August over 3 years (2002 to 2004). We evaluated 23 amplified fragment length polymorphism (AFLP) loci in 780 isolates of G. zeae. Normalized genotypic diversity was high (ranging from 0.91 to 1.0) in NYAPs of G. zeae, and nearly all of the isolates in each of the populations represented unique AFLP haplotypes. Pairwise calculations of Nei’s unbiased genetic identity were uniformly high (>0.99) for all of the possible NYAP comparisons. Although the NYAPs were genotypically diverse, they were genetically similar and potentially part of a large, interbreeding population of G. zeae in North America. Estimates of the fixation index (GST) and the effective migration rate (Nm) for the NYAPs indicated significant genetic exchange among populations. Relatively low levels of linkage disequilibrium in the NYAPs suggest that outcrossing is common and that the populations are not a result of a recent bottleneck or invasion. When NYAPs were compared with those collected across the United States, the observed genetic identities between the populations ranged from 0.92 to 0.99. However, there was a significant negative correlation (R = –0.59, P < 0.001) between genetic identity and geographic distance, suggesting that some genetic isolation may occur on a continental scale. The contribution of long-distance transport of G. zeae to regional epidemics of FHB and GER remains unclear, but the diverse atmospheric populations of G. zeae suggest that inoculum may originate from multiple locations over large geographic distances. Practically, the long-distance transport of G. zeae suggests that management of inoculum sources on a local scale, unless performed over extensive production areas, will not be completely effective for the management of FHB and GER.

  • interfertility of two mating populations in the Gibberella fujikuroi species complex
    European Journal of Plant Pathology, 2004
    Co-Authors: John F Leslie, Kurt A Zeller, Melissa Wohler, Brett A. Summerell
    Abstract:

    Gibberella fujikuroi and Gibberella intermedia (mating populations ‘C’ and ‘D’ of the G. fujikuroi species complex) can be distinguished by differences in the spectrum of mycotoxins produced, the lack of sexual cross-fertility and diagnostic differences in their DNA sequences. Some isolates from these two biological species, however, can interbreed and complete meiosis to produce viable progeny. Analysis of marker segregation amongst such hybrid progeny can be used to estimate the degree of genomic rearrangement and genetic incompatibility that has accumulated since these sibling species diverged. Recombinant progeny were isolated from crosses of the standard tester strains for these two species and from crosses between these standard testers and a field isolate (KSU X-10626) that was cross-fertile with tester strains of both species. Progeny in all of the crosses segregated for amplified fragment length polymorphisms (AFLPs). Segregation of AFLP loci deviated from 1:1 for two thirds of the loci amongst the progeny of the cross between the ‘C’ and ‘D’ mating population tester strains, but <20% of the polymorphic loci in the cross of either tester with KSU X-10626 showed such distortion. It was concluded that G. intermedia and G. fujikuroi are sufficiently interfertile to belong to the same biological species, but that changing the nomenclature to reflect this interfertility requires more evidence for the natural occurrence of a continuum in fertility than is presently available.

  • species diversity of and toxin production by Gibberella fujikuroi species complex strains isolated from native prairie grasses in kansas
    Applied and Environmental Microbiology, 2004
    Co-Authors: John F Leslie, Kurt A Zeller, Antonio F Logrieco, Giuseppina Mule, Antonio Moretti, Alberto Ritieni
    Abstract:

    Fusarium species from agricultural crops have been well studied with respect to toxin production and genetic diversity, while similar studies of communities from nonagricultural plants are much more limited. We examined 72 Fusarium isolates from a native North American tallgrass prairie and found that Gibberella intermedia (Fusarium proliferatum), Gibberella moniliformis (Fusarium verticillioides), and Gibberella konza (Fusarium konzum) dominated. Gibberella thapsina (Fusarium thapsinum) and Gibberella subglutinans (Fusarium subglutinans) also were recovered, as were seven isolates that could not be assigned to any previously described species on the basis of either morphological or molecular characters. In general, isolates from the prairie grasses produced the same toxins in quantities similar to those produced by isolates of the same species recovered from agricultural hosts. The G. konza isolates produce little or no fumonisins (up to 120 μg/g by one strain), and variable but generally low to moderate amounts of beauvericin (4 to 320 μg/g) and fusaproliferin (50 to 540 μg/g). Toxicity to Artemia salina larvae within most species was correlated with the concentration of either beauvericin or fusaproliferin produced. Organic isolates from some cultures of G. moniliformis were highly toxic towards A. salina even though they produced little, if any, beauvericin or fusaproliferin. Thus, additional potentially toxigenic compounds may be synthesized by G. moniliformis strains isolated from prairie grasses. The Fusarium community from these grasses appears to contain some species not found in surrounding agricultural communities, including some that probably are undescribed, and could be capable of serving as a reservoir for strains of potential agricultural importance.

  • Gibberella konza (Fusarium konzum) sp. nov. from prairie grasses, a new species in the Gibberella fujikuroi species complex
    Mycologia, 2003
    Co-Authors: Kurt A Zeller, Brett A. Summerell, Suzanne Bullock, John F Leslie
    Abstract:

    The Gibberella fujikuroi species complex (Fusarium section Liseola and allied taxa) is composed of an increasingly large number of morphological, biological and phylogenetic species. Most of the known species in this group have been isolated from agricultural ecosystems or have been described from a small number of isolates. We sampled Fusarium communities from native prairie grasses in Kansas and recovered a large number of isolates that superficially resemble F. anthophilum. We used a combination of morphological, biological and molecular characters to describe a new species, Gibberella konza (Gibberella fujikuroi mating population I [MP-I]), from native prairie grasses in Kansas. Although female fertility for field isolates of this species appears to be low, G. konza is heterothallic, and we developed reliably female fertile mating population tester strains for this species. The F. konzum anamorph is differentiated from F. anthophilum and from other Fusarium species in section Liseola by mating compatibility, morphology, AFLP fingerprint profile and differences in β-tubulin DNA sequence.

Linda J Harris - One of the best experts on this subject based on the ideXlab platform.

  • transcriptome profiling of two maize inbreds with distinct responses to Gibberella ear rot disease to identify candidate resistance genes
    BMC Genomics, 2018
    Co-Authors: Aida Z Kebede, Anne Johnston, Danielle Schneiderman, Whynn Bosnich, Linda J Harris
    Abstract:

    Gibberella ear rot (GER) is one of the most economically important fungal diseases of maize in the temperate zone due to moldy grain contaminated with health threatening mycotoxins. To develop resistant genotypes and control the disease, understanding the host-pathogen interaction is essential. RNA-Seq-derived transcriptome profiles of fungal- and mock-inoculated developing kernel tissues of two maize inbred lines were used to identify differentially expressed transcripts and propose candidate genes mapping within GER resistance quantitative trait loci (QTL). A total of 1255 transcripts were significantly (P ≤ 0.05) up regulated due to fungal infection in both susceptible and resistant inbreds. A greater number of transcripts were up regulated in the former (1174) than the latter (497) and increased as the infection progressed from 1 to 2 days after inoculation. Focusing on differentially expressed genes located within QTL regions for GER resistance, we identified 81 genes involved in membrane transport, hormone regulation, cell wall modification, cell detoxification, and biosynthesis of pathogenesis related proteins and phytoalexins as candidate genes contributing to resistance. Applying droplet digital PCR, we validated the expression profiles of a subset of these candidate genes from QTL regions contributed by the resistant inbred on chromosomes 1, 2 and 9. By screening global gene expression profiles for differentially expressed genes mapping within resistance QTL regions, we have identified candidate genes for Gibberella ear rot resistance on several maize chromosomes which could potentially lead to a better understanding of Fusarium resistance mechanisms.

  • Transcriptome profiling of two maize inbreds with distinct responses to Gibberella ear rot disease to identify candidate resistance genes
    BMC, 2018
    Co-Authors: Aida Z Kebede, Anne Johnston, Danielle Schneiderman, Whynn Bosnich, Linda J Harris
    Abstract:

    Abstract Background Gibberella ear rot (GER) is one of the most economically important fungal diseases of maize in the temperate zone due to moldy grain contaminated with health threatening mycotoxins. To develop resistant genotypes and control the disease, understanding the host-pathogen interaction is essential. Results RNA-Seq-derived transcriptome profiles of fungal- and mock-inoculated developing kernel tissues of two maize inbred lines were used to identify differentially expressed transcripts and propose candidate genes mapping within GER resistance quantitative trait loci (QTL). A total of 1255 transcripts were significantly (P ≤ 0.05) up regulated due to fungal infection in both susceptible and resistant inbreds. A greater number of transcripts were up regulated in the former (1174) than the latter (497) and increased as the infection progressed from 1 to 2 days after inoculation. Focusing on differentially expressed genes located within QTL regions for GER resistance, we identified 81 genes involved in membrane transport, hormone regulation, cell wall modification, cell detoxification, and biosynthesis of pathogenesis related proteins and phytoalexins as candidate genes contributing to resistance. Applying droplet digital PCR, we validated the expression profiles of a subset of these candidate genes from QTL regions contributed by the resistant inbred on chromosomes 1, 2 and 9. Conclusion By screening global gene expression profiles for differentially expressed genes mapping within resistance QTL regions, we have identified candidate genes for Gibberella ear rot resistance on several maize chromosomes which could potentially lead to a better understanding of Fusarium resistance mechanisms

  • quantitative trait loci mapping for Gibberella ear rot resistance and associated agronomic traits using genotyping by sequencing in maize
    Theoretical and Applied Genetics, 2016
    Co-Authors: Aida Z Kebede, T Woldemariam, L M Reid, Linda J Harris
    Abstract:

    Key message Unique and co-localized chromosomal regions affecting Gibberella ear rot disease resistance and correlated agronomic traits were identified in maize.

  • colonization of maize silks by fusarium graminearum the causative organism of Gibberella ear rot
    Botany, 2007
    Co-Authors: Shea S Miller, L M Reid, Linda J Harris
    Abstract:

    One of the most economically important diseases of maize in Canada is Gibberella ear rot caused by Fusarium graminearum Schwabe (teleomorph = Gibberella zeae (Schw.) Petch). Understanding how the fungus becomes established will help in developing effective strategies to reduce the incidence of this disease. This study investigates the infection process of F. graminearum on maize silks using both a wild-type F. graminearum as well as a strain transformed with a gene from jellyfish to constitutively express green fluorescent protein. Immature ears of maize were inoculated in the field with wild-type F. graminearum and harvested at specific times post infection, and the silks were stained with Chlorazol Black E for examination. In addition, uninoculated ears were excised, placed on water agar in large Petri dishes, and the silks inoculated with a suspension of macroconidia of the transformed fungus. The progress of fungal growth was then monitored using microscopy. Germination of conidia was observed 4–6 h a...

Kurt A Zeller - One of the best experts on this subject based on the ideXlab platform.

  • Genetic Structure of Atmospheric Populations of Gibberella zeae
    Phytopathology, 2006
    Co-Authors: David G. Schmale, Kurt A Zeller, John F Leslie, Amgad A. Saleh, Elson J. Shields, Gary C Bergstrom
    Abstract:

    Schmale, D. G., III, Leslie, J. F., Zeller, K. A., Saleh, A. A., Shields, E. J., and Bergstrom, G. C. 2006. Genetic structure of atmospheric populations of Gibberella zeae. Phytopathology 96:1021-1026. Gibberella zeae, causal agent of Fusarium head blight (FHB) of wheat and barley and Gibberella ear rot (GER) of corn, may be transported over long distances in the atmosphere. Epidemics of FHB and GER may be initiated by regional atmospheric sources of inoculum of G. zeae; however, little is known about the origin of inoculum for these epidemics. We tested the hypothesis that atmospheric populations of G. zeae are genetically diverse by determining the genetic structure of New York atmospheric populations (NYAPs) of G. zeae, and comparing them with populations of G. zeae collected from seven different states in the northern United States. Viable, airborne spores of G. zeae were collected in rotational (lacking any apparent within-field inoculum sources of G. zeae) wheat and corn fields in Aurora, NY in May through August over 3 years (2002 to 2004). We evaluated 23 amplified fragment length polymorphism (AFLP) loci in 780 isolates of G. zeae. Normalized genotypic diversity was high (ranging from 0.91 to 1.0) in NYAPs of G. zeae, and nearly all of the isolates in each of the populations represented unique AFLP haplotypes. Pairwise calculations of Nei’s unbiased genetic identity were uniformly high (>0.99) for all of the possible NYAP comparisons. Although the NYAPs were genotypically diverse, they were genetically similar and potentially part of a large, interbreeding population of G. zeae in North America. Estimates of the fixation index (GST) and the effective migration rate (Nm) for the NYAPs indicated significant genetic exchange among populations. Relatively low levels of linkage disequilibrium in the NYAPs suggest that outcrossing is common and that the populations are not a result of a recent bottleneck or invasion. When NYAPs were compared with those collected across the United States, the observed genetic identities between the populations ranged from 0.92 to 0.99. However, there was a significant negative correlation (R = –0.59, P < 0.001) between genetic identity and geographic distance, suggesting that some genetic isolation may occur on a continental scale. The contribution of long-distance transport of G. zeae to regional epidemics of FHB and GER remains unclear, but the diverse atmospheric populations of G. zeae suggest that inoculum may originate from multiple locations over large geographic distances. Practically, the long-distance transport of G. zeae suggests that management of inoculum sources on a local scale, unless performed over extensive production areas, will not be completely effective for the management of FHB and GER.

  • interfertility of two mating populations in the Gibberella fujikuroi species complex
    European Journal of Plant Pathology, 2004
    Co-Authors: John F Leslie, Kurt A Zeller, Melissa Wohler, Brett A. Summerell
    Abstract:

    Gibberella fujikuroi and Gibberella intermedia (mating populations ‘C’ and ‘D’ of the G. fujikuroi species complex) can be distinguished by differences in the spectrum of mycotoxins produced, the lack of sexual cross-fertility and diagnostic differences in their DNA sequences. Some isolates from these two biological species, however, can interbreed and complete meiosis to produce viable progeny. Analysis of marker segregation amongst such hybrid progeny can be used to estimate the degree of genomic rearrangement and genetic incompatibility that has accumulated since these sibling species diverged. Recombinant progeny were isolated from crosses of the standard tester strains for these two species and from crosses between these standard testers and a field isolate (KSU X-10626) that was cross-fertile with tester strains of both species. Progeny in all of the crosses segregated for amplified fragment length polymorphisms (AFLPs). Segregation of AFLP loci deviated from 1:1 for two thirds of the loci amongst the progeny of the cross between the ‘C’ and ‘D’ mating population tester strains, but <20% of the polymorphic loci in the cross of either tester with KSU X-10626 showed such distortion. It was concluded that G. intermedia and G. fujikuroi are sufficiently interfertile to belong to the same biological species, but that changing the nomenclature to reflect this interfertility requires more evidence for the natural occurrence of a continuum in fertility than is presently available.

  • species diversity of and toxin production by Gibberella fujikuroi species complex strains isolated from native prairie grasses in kansas
    Applied and Environmental Microbiology, 2004
    Co-Authors: John F Leslie, Kurt A Zeller, Antonio F Logrieco, Giuseppina Mule, Antonio Moretti, Alberto Ritieni
    Abstract:

    Fusarium species from agricultural crops have been well studied with respect to toxin production and genetic diversity, while similar studies of communities from nonagricultural plants are much more limited. We examined 72 Fusarium isolates from a native North American tallgrass prairie and found that Gibberella intermedia (Fusarium proliferatum), Gibberella moniliformis (Fusarium verticillioides), and Gibberella konza (Fusarium konzum) dominated. Gibberella thapsina (Fusarium thapsinum) and Gibberella subglutinans (Fusarium subglutinans) also were recovered, as were seven isolates that could not be assigned to any previously described species on the basis of either morphological or molecular characters. In general, isolates from the prairie grasses produced the same toxins in quantities similar to those produced by isolates of the same species recovered from agricultural hosts. The G. konza isolates produce little or no fumonisins (up to 120 μg/g by one strain), and variable but generally low to moderate amounts of beauvericin (4 to 320 μg/g) and fusaproliferin (50 to 540 μg/g). Toxicity to Artemia salina larvae within most species was correlated with the concentration of either beauvericin or fusaproliferin produced. Organic isolates from some cultures of G. moniliformis were highly toxic towards A. salina even though they produced little, if any, beauvericin or fusaproliferin. Thus, additional potentially toxigenic compounds may be synthesized by G. moniliformis strains isolated from prairie grasses. The Fusarium community from these grasses appears to contain some species not found in surrounding agricultural communities, including some that probably are undescribed, and could be capable of serving as a reservoir for strains of potential agricultural importance.

  • Gibberella konza (Fusarium konzum) sp. nov. from prairie grasses, a new species in the Gibberella fujikuroi species complex
    Mycologia, 2003
    Co-Authors: Kurt A Zeller, Brett A. Summerell, Suzanne Bullock, John F Leslie
    Abstract:

    The Gibberella fujikuroi species complex (Fusarium section Liseola and allied taxa) is composed of an increasingly large number of morphological, biological and phylogenetic species. Most of the known species in this group have been isolated from agricultural ecosystems or have been described from a small number of isolates. We sampled Fusarium communities from native prairie grasses in Kansas and recovered a large number of isolates that superficially resemble F. anthophilum. We used a combination of morphological, biological and molecular characters to describe a new species, Gibberella konza (Gibberella fujikuroi mating population I [MP-I]), from native prairie grasses in Kansas. Although female fertility for field isolates of this species appears to be low, G. konza is heterothallic, and we developed reliably female fertile mating population tester strains for this species. The F. konzum anamorph is differentiated from F. anthophilum and from other Fusarium species in section Liseola by mating compatibility, morphology, AFLP fingerprint profile and differences in β-tubulin DNA sequence.

  • a genetic map of Gibberella zeae fusarium graminearum
    Genetics, 2002
    Co-Authors: James E Jurgenson, Kurt A Zeller, John F Leslie, Robert L. Bowden, Nancy J Alexander, Ronald D Plattner
    Abstract:

    We constructed a genetic linkage map of Gibberella zeae ( Fusarium graminearum ) by crossing complementary nitrate-nonutilizing ( nit ) mutants of G. zeae strains R-5470 (from Japan) and Z-3639 (from Kansas). We selected 99 nitrate-utilizing (recombinant) progeny and analyzed them for amplified fragment length polymorphisms (AFLPs). We used 34 pairs of two-base selective AFLP primers and identified 1048 polymorphic markers that mapped to 468 unique loci on nine linkage groups. The total map length is ~1300 cM with an average interval of 2.8 map units between loci. Three of the nine linkage groups contain regions in which there are high levels of segregation distortion. Selection for the nitrate-utilizing recombinant progeny can explain two of the three skewed regions. Two linkage groups have recombination patterns that are consistent with the presence of intercalary inversions. Loci governing trichothecene toxin amount and type (deoxynivalenol or nivalenol) map on linkage groups IV and I, respectively. The locus governing the type of trichothecene produced (nivalenol or deoxynivalenol) cosegregated with the TRI5 gene (which encodes trichodiene synthase) and probably maps in the trichothecene gene cluster. This linkage map will be useful in population genetic studies, in map-based cloning, for QTL (quantitative trait loci) analysis, for ordering genomic libraries, and for genomic comparisons of related species.

Qin Yang - One of the best experts on this subject based on the ideXlab platform.

  • transcriptome analysis of maize resistance to fusarium graminearum
    BMC Genomics, 2016
    Co-Authors: Yongjie Liu, Dongfeng Zhang, Chao Wang, Yanling Guo, Qin Yang
    Abstract:

    Gibberella stalk rot caused by Fusarium graminearum is one of the most destructive soil-borne diseases of maize (Zea mays L.). Chemical means of controlling Gibberella stalk rot are not very effective; development of highly resistant hybrids is the best choice for disease control. Hence, understanding of the molecular basis underlying maize resistance against Gibberella stalk rot would undoubtedly facilitate the resistance breeding for stalk rot. Two quantitative trait loci (QTL), qRfg1 and qRfg2, conferring resistance to Gibberella stalk rot were detected in our previous study. Three near-isogenic lines (NILs) of maize with either qRfg1 (NIL1) or qRfg2 (NIL2), or neither (NIL3) were generated and subjected to RNA sequencing to study the transcriptional changes after F. graminearum inoculation at 0 (control), 6, and 18 h post-inoculation (hpi). In total, 536,184,652 clean reads were generated, and gene expression levels were calculated using FPKM (fragments per kilobase of exon model per million mapped reads). A total of 7252 differentially expressed genes (DEGs) were found in the three NILs after F. graminearum inoculation. As many as 2499 DEGs were detected between NIL1 and NIL3 at 0 hpi, of which 884 DEGs were more abundant in NIL1 and enriched in defense responses. After F. graminearum inoculation, 1070 and 751 genes were exclusively up- and downregulated, respectively, in NIL1 as compared to NIL3. The 1070 upregulated DEGs were enriched in growth/development, photosynthesis/biogenesis, and defense-related responses. Genes encoding putative auxin-induced proteins and GH3 family proteins in auxin signaling pathway were highly induced and lasted longer in NIL3. Genes involved in polar auxin transport (PAT) were more abundant in NIL3 as compared with NIL2. The qRfg1 confers its resistance to Gibberella stalk rot through both constitutive and induced high expression of defense-related genes; while qRfg2 enhances maize resistance to the disease via relatively lower induction of auxin signaling and repression of PAT. The defense-related transcriptional changes underlying each QTL will undoubtedly facilitate our understanding of the resistance mechanism and resistance breeding for maize stalk rot.

  • fine mapping of qrfg2 a qtl for resistance to Gibberella stalk rot in maize
    Theoretical and Applied Genetics, 2012
    Co-Authors: Dongfeng Zhang, Qin Yang, Yanling Guo, Yongjie Liu, Shaojiang Chen
    Abstract:

    Stalk rot is one of the most devastating diseases in maize worldwide. In our previous study, two QTLs, a major qRfg1 and a minor qRfg2, were identified in the resistant inbred line ‘1145’ to confer resistance to Gibberella stalk rot. In the present study, we report on fine-mapping of the minor qRfg2 that is located on chromosome 1 and account for ~8.9% of the total phenotypic variation. A total of 22 markers were developed in the qRfg2 region to resolve recombinants. The progeny-test mapping strategy was developed to accurately determine the phenotypes of all recombinants for fine-mapping of the qRfg2 locus. This fine-mapping process was performed from BC4F1 to BC8F1 generations to narrow down the qRfg2 locus into ~300 kb, flanked by the markers SSRZ319 and CAPSZ459. A predicted gene in the mapped region, coding for an auxin-regulated protein, is believed to be a candidate for qRfg2. The qRfg2 locus could steadily increase the resistance percentage by ~12% across different backcross generations, suggesting its usefulness in enhancing maize resistance against Gibberella stalk rot.

  • a major qtl for resistance to Gibberella stalk rot in maize
    Theoretical and Applied Genetics, 2010
    Co-Authors: Qin Yang, Dongfeng Zhang, Guangming Yin, Yanling Guo, Shaojiang Chen
    Abstract:

    Fusarium graminearum Schwabe, the conidial form of Gibberella zeae, is the causal fungal pathogen responsible for Gibberella stalk rot of maize. Using a BC1F1 backcross mapping population derived from a cross between ‘1145’ (donor parent, completely resistant) and ‘Y331’ (recurrent parent, highly susceptible), two quantitative trait loci (QTLs), qRfg1 and qRfg2, conferring resistance to Gibberella stalk rot have been detected. The major QTL qRfg1 was further confirmed in the double haploid, F2, BC2F1, and BC3F1 populations. Within a qRfg1 confidence interval, single/low-copy bacterial artificial chromosome sequences, anchored expressed sequence tags, and insertion/deletion polymorphisms, were exploited to develop 59 markers to saturate the qRfg1 region. A step by step narrowing-down strategy was adopted to pursue fine mapping of the qRfg1 locus. Recombinants within the qRfg1 region, screened from each backcross generation, were backcrossed to ‘Y331’ to produce the next backcross progenies. These progenies were individually genotyped and evaluated for resistance to Gibberella stalk rot. Significant (or no significant) difference in resistance reactions between homozygous and heterozygous genotypes in backcross progeny suggested presence (or absence) of qRfg1 in ‘1145’ donor fragments. The phenotypes were compared to sizes of donor fragments among recombinants to delimit the qRfg1 region. Sequential fine mapping of BC4F1 to BC6F1 generations enabled us to progressively refine the qRfg1 locus to a ~500-kb interval flanked by the markers SSR334 and SSR58. Meanwhile, resistance of qRfg1 to Gibberella stalk rot was also investigated in BC3F1 to BC6F1 generations. Once introgressed into the ‘Y331’ genome, the qRfg1 locus could steadily enhance the frequency of resistant plants by 32–43%. Hence, the qRfg1 locus was capable of improving maize resistance to Gibberella stalk rot.

Ronald D Plattner - One of the best experts on this subject based on the ideXlab platform.

  • a genetic map of Gibberella zeae fusarium graminearum
    Genetics, 2002
    Co-Authors: James E Jurgenson, Kurt A Zeller, John F Leslie, Robert L. Bowden, Nancy J Alexander, Ronald D Plattner
    Abstract:

    We constructed a genetic linkage map of Gibberella zeae ( Fusarium graminearum ) by crossing complementary nitrate-nonutilizing ( nit ) mutants of G. zeae strains R-5470 (from Japan) and Z-3639 (from Kansas). We selected 99 nitrate-utilizing (recombinant) progeny and analyzed them for amplified fragment length polymorphisms (AFLPs). We used 34 pairs of two-base selective AFLP primers and identified 1048 polymorphic markers that mapped to 468 unique loci on nine linkage groups. The total map length is ~1300 cM with an average interval of 2.8 map units between loci. Three of the nine linkage groups contain regions in which there are high levels of segregation distortion. Selection for the nitrate-utilizing recombinant progeny can explain two of the three skewed regions. Two linkage groups have recombination patterns that are consistent with the presence of intercalary inversions. Loci governing trichothecene toxin amount and type (deoxynivalenol or nivalenol) map on linkage groups IV and I, respectively. The locus governing the type of trichothecene produced (nivalenol or deoxynivalenol) cosegregated with the TRI5 gene (which encodes trichodiene synthase) and probably maps in the trichothecene gene cluster. This linkage map will be useful in population genetic studies, in map-based cloning, for QTL (quantitative trait loci) analysis, for ordering genomic libraries, and for genomic comparisons of related species.

  • A Genetic Map of Gibberella zeae (Fusarium graminearum)
    Genetics, 2002
    Co-Authors: James E Jurgenson, Kurt A Zeller, John F Leslie, Robert L. Bowden, Nancy J Alexander, Ronald D Plattner
    Abstract:

    We constructed a genetic linkage map of Gibberella zeae (Fusarium graminearum) by crossing complementary nitrate-nonutilizing (nit) mutants of G. zeae strains R-5470 (from Japan) and Z-3639 (from Kansas). We selected 99 nitrate-utilizing (recombinant) progeny and analyzed them for amplified fragment length polymorphisms (AFLPs). We used 34 pairs of two-base selective AFLP primers and identified 1048 polymorphic markers that mapped to 468 unique loci on nine linkage groups. The total map length is approximately 1300 cM with an average interval of 2.8 map units between loci. Three of the nine linkage groups contain regions in which there are high levels of segregation distortion. Selection for the nitrate-utilizing recombinant progeny can explain two of the three skewed regions. Two linkage groups have recombination patterns that are consistent with the presence of intercalary inversions. Loci governing trichothecene toxin amount and type (deoxynivalenol or nivalenol) map on linkage groups IV and I, respectively. The locus governing the type of trichothecene produced (nivalenol or deoxynivalenol) cosegregated with the TRI5 gene (which encodes trichodiene synthase) and probably maps in the trichothecene gene cluster. This linkage map will be useful in population genetic studies, in map-based cloning, for QTL (quantitative trait loci) analysis, for ordering genomic libraries, and for genomic comparisons of related species.

  • fusarium species from nepalese rice and production of mycotoxins and gibberellic acid by selected species
    Applied and Environmental Microbiology, 2000
    Co-Authors: Anne E Desjardins, Hira K Manandhar, Ronald D Plattner, Gyanu Manandhar, S M Poling, Chris M Maragos
    Abstract:

    Infection of cereal grains with Fusarium species can cause contamination with mycotoxins that affect human and animal health. To determine the potential for mycotoxin contamination, we isolated Fusarium species from samples of rice seeds that were collected in 1997 on farms in the foothills of the Nepal Himalaya. The predominant Fusarium species in surface-disinfested seeds with husks were species of the Gibberella fujikuroi complex, including G. fujikuroi mating population A (anamorph, Fusarium verticillioides), G. fujikuroi mating population C (anamorph, Fusarium fujikuroi), and G. fujikuroi mating population D (anamorph, Fusarium proliferatum). The widespread occurrence of mating population D suggests that its role in the complex symptoms of bakanae disease of rice may be significant. Other common species were Gibberella zeae (anamorph, Fusarium graminearum) and Fusarium semitectum, with Fusarium acuminatum, Fusarium anguioides, Fusarium avenaceum, Fusarium chlamydosporum, Fusarium equiseti, and Fusarium oxysporum occasionally present. Strains of mating population C produced beauvericin, moniliformin, and gibberellic acid, but little or no fumonisin, whereas strains of mating population D produced beauvericin, fumonisin, and, usually, moniliformin, but no gibberellic acid. Some strains of G. zeae produced the 8-ketotrichothecene nivalenol, whereas others produced deoxynivalenol. Despite the occurrence of fumonisin-producing strains of mating population D, and of 8-ketotrichothecene-producing strains of G. zeae, Nepalese rice showed no detectable contamination with these mycotoxins. Effective traditional practices for grain drying and storage may prevent contamination of Nepalese rice with Fusarium mycotoxins.

  • identification and characterization of strains of Gibberella fujikuroi mating population a with rare fumonisin production phenotypes
    Mycologia, 1996
    Co-Authors: Ronald D Plattner, Anne E Desjardins, John F Leslie, Paul E Nelson
    Abstract:

    A survey of 245 strains of Gibberella fujik? uroi mating population A (anamorph Fusarium mon? iliforme) isolated primarily from maize and sorghum in North America identified strains with three rare