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Morgan Churchill - One of the best experts on this subject based on the ideXlab platform.
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The Origin and Evolutionary Biology of Pinnipeds: Seals, Sea Lions, and Walruses
Annual Review of Earth and Planetary Sciences, 2018Co-Authors: Annalisa Berta, Morgan Churchill, Robert W. BoesseneckerAbstract:The oldest definitive pinniped fossils date from approximately 30.6–23 million years ago (Ma) in the North Pacific. Pinniped monophyly is consistently supported; the group shares a common ancestry with arctoid carnivorans, either ursids or musteloids. Crown pinnipeds comprise the Otariidae (fur seals and sea lions), Odobenidae (walruses), and Phocidae (seals), with paraphyletic “enaliarctines” falling outside the crown group. The position of extinct Desmatophocidae is debated; they are considered to be closely related to both otariids and odobenids or, alternatively, to phocids. Both otariids and odobenids are known from the North Pacific, diverging approximately 19 Ma, with phocids originating in the North Atlantic or Paratethys region 19–14 Ma. Our understanding of pinniped paleobiology has been enriched by studies that incorporate anatomical and behavioral data into a phylogenetic framework. There is now evidence for sexual dimorphism in the earliest pinnipeds, heralding polygynous breeding systems, fo...
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The oldest known fur seal
Biology letters, 2015Co-Authors: Robert W. Boessenecker, Morgan ChurchillAbstract:The poorly known fossil record of fur seals and sea lions (Otariidae) does not reflect their current diversity and widespread abundance. This limited fossil record contrasts with the more complete fossil records of other pinnipeds such as walruses (Odobenidae). The oldest known otariids appear 5–6 Ma after the earliest odobenids, and the remarkably derived craniodental morphology of otariids offers few clues to their early evolutionary history and phylogenetic affinities among pinnipeds. We report a new otariid, Eotaria crypta, from the lower middle Miocene ‘Topanga’ Formation (15–17.1 Ma) of southern California, represented by a partial mandible with well-preserved dentition. Eotaria crypta is geochronologically intermediate between ‘enaliarctine’ stem pinnipedimorphs (16.6–27 Ma) and previously described otariid fossils (7.3–12.5 Ma), as well as morphologically intermediate by retaining an M2 and a reduced M1 metaconid cusp and lacking P2–4 metaconid cusps. Eotaria crypta eliminates the otariid ghost lineage and confirms that otariids evolved from an ‘enaliarctine’-like ancestor.
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cope s rule and the evolution of body size in pinnipedimorpha mammalia carnivora
Evolution, 2015Co-Authors: Morgan Churchill, Mark T Clementz, Naoki KohnoAbstract:Cope's rule describes the evolutionary trend for animal lineages to increase in body size over time. In this study, we tested the validity of Cope's rule for a marine mammal clade, the Pinnipedimorpha, which includes the extinct Desmatophocidae, and extant Phocidae (earless seals), Otariidae (fur seals and sea lions), and Odobenidae (walruses). We tested for the presence of Cope's rule by compiling a large dataset of body size data for extant and fossil pinnipeds and then examined how body size evolved through time. We found that there was a positive relationship between geologic age and body size. However, this trend is the result of differences between early assemblages of small-bodied pinnipeds (Oligocene to early Miocene) and later assemblages (middle Miocene to Pliocene) for which species exhibited greater size diversity. No significant differences were found between the number of increases or decreases in body size within Pinnipedimorpha or within specific pinniped clades. This suggests that the pinniped body size increase was driven by passive diversification into vacant niche space, with the common ancestor of Pinnipedimorpha occurring near the minimum adult body size possible for a marine mammal. Based upon the above results, the evolutionary history of pinnipeds does not follow Cope's rule.
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A Reevaluation of the Morphology, Paleoecology, and Phylogenetic Relationships of the Enigmatic Walrus Pelagiarctos
PloS one, 2013Co-Authors: Robert W. Boessenecker, Morgan ChurchillAbstract:Background A number of aberrant walruses (Odobenidae) have been described from the Neogene of the North Pacific, including specialized suction-feeding and generalist fish-eating taxa. At least one of these fossil walruses has been hypothesized to have been a specialized predator of other marine mammals, the middle Miocene walrus Pelagiarctos thomasi from the Sharktooth Hill Bonebed of California (16.1–14.5 Ma). Methodology/Principal Findings A new specimen of Pelagiarctos from the middle Miocene “Topanga” Formation of southern California (17.5–15 Ma) allows a reassessment of the morphology and feeding ecology of this extinct walrus. The mandibles of this new specimen are robust with large canines, bulbous premolars with prominent paraconid, metaconid, hypoconid cusps, crenulated lingual cingula with small talonid basins, M2 present, double-rooted P3–M1, single-rooted P1 and M2, and a P2 with a bilobate root. Because this specimen lacks a fused mandibular symphysis like Pelagiarctos thomasi, it is instead referred to Pelagiarctos sp. This specimen is more informative than the fragmentary holotype of Pelagiarctos thomasi, permitting Pelagiarctos to be included within a phylogenetic analysis for the first time. Analysis of a matrix composed of 90 cranial, dental, mandibular and postcranial characters indicates that Pelagiarctos is an early diverging walrus and sister to the late Miocene walrus Imagotaria downsi. We reevaluate the evidence for a macropredatory lifestyle for Pelagiarctos, and we find no evidence of specialization towards a macrophagous diet, suggesting that Pelagiarctos was a generalist feeder with the ability to feed on large prey. Conclusions/Significance This new specimen of Pelagiarctos adds to the knowledge of this problematic taxon. The phylogenetic analysis conclusively demonstrates that Pelagiarctos is an early diverging walrus. Pelagiarctos does not show morphological specializations associated with macrophagy, and was likely a generalist predator, feeding on fish, invertebrates, and the occasional warm-blooded prey item.
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Strict consensus tree of odobenid relationships.
2013Co-Authors: Robert W. Boessenecker, Morgan ChurchillAbstract:Bootstrap support and Bayesian posterior probabilities are labeled adjacent to nodes (above and below, respectively). Odobenidae and subfamilies and tribes within Odobenidae are labeled to the right. Extinct taxa are labeled with ‘†’.
Naoki Kohno - One of the best experts on this subject based on the ideXlab platform.
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RESEARCH ARTICLE A New Late Miocene Odobenid (Mammalia: Carnivora) from Hokkaido, Japan Suggests Rapid Diversification of Basal Miocene
2016Co-Authors: Yoshihiro Tanaka, Naoki KohnoAbstract:The modern walrus,Odobenus rosmarus, is specialized and only extant member of the fam-ily Odobenidae. They were much more diversified in the past, and at least 16 genera and 20 species of fossil walruses have been known. Although their diversity increased in the late Miocene and Pliocene (around 8–2 Million years ago), older records are poorly known. A new genus and species of archaic odobenid, Archaeodobenus akamatsui, gen. et sp. nov. from the late Miocene (ca. 10.0–9.5 Ma) top of the Ichibangawa Formation, Hokkaido, north-ern Japan, suggests rapid diversification of basal Miocene walruses. Archaeodobenus aka-matsui is the contemporaneous Pseudotaria muramotoi from the same formation, but they are distinguishable from each other in size and shape of the occipital condyle, foramen magnum and mastoid process of the cranium, and other postcranial features. Based on our phylogenetic analysis, A. akamatsuimight have split from P.muramotoi at the late Miocene in the western North Pacific. This rapid diversification of the archaic odobenids occurred with a combination of marine regression and transgression, which provided geological isola-tion among the common ancestors of extinct odobenids
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Correction: A New Late Miocene Odobenid (Mammalia: Carnivora) from Hokkaido, Japan Suggests Rapid Diversification of Basal Miocene Odobenids
PloS one, 2015Co-Authors: Yoshihiro Tanaka, Naoki KohnoAbstract:The modern walrus, Odobenus rosmarus, is specialized and only extant member of the family Odobenidae. They were much more diversified in the past, and at least 16 genera and 20 species of fossil walruses have been known. Although their diversity increased in the late Miocene and Pliocene (around 8–2 Million years ago), older records are poorly known. A new genus and species of archaic odobenid, Archaeodobenus akamatsui, gen. et sp. nov. from the late Miocene (ca. 10.0–9.5 Ma) top of the Ichibangawa Formation, Hokkaido, northern Japan, suggests rapid diversification of basal Miocene walruses. Archaeodobenus akamatsui is the contemporaneous Pseudotaria muramotoi from the same formation, but they are distinguishable from each other in size and shape of the occipital condyle, foramen magnum and mastoid process of the cranium, and other postcranial features. Based on our phylogenetic analysis, A. akamatsui might have split from P. muramotoi at the late Miocene in the western North Pacific. This rapid diversification of the archaic odobenids occurred with a combination of marine regression and transgression, which provided geological isolation among the common ancestors of extinct odobenids.
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A New Late Miocene Odobenid (Mammalia: Carnivora) from Hokkaido, Japan Suggests Rapid Diversification of Basal Miocene Odobenids.
PloS one, 2015Co-Authors: Yoshihiro Tanaka, Naoki KohnoAbstract:The modern walrus, Odobenus rosmarus, is specialized and only extant member of the family Odobenidae. They were much more diversified in the past, and at least 16 genera and 20 species of fossil walruses have been known. Although their diversity increased in the late Miocene and Pliocene (around 8-2 Million years ago), older records are poorly known. A new genus and species of archaic odobenid, Archaeodobenus akamatsui, gen. et sp. nov. from the late Miocene (ca. 10.0-9.5 Ma) top of the Ichibangawa Formation, Hokkaido, northern Japan, suggests rapid diversification of basal Miocene walruses. Archaeodobenus akamatsui is the contemporaneous Pseudotaria muramotoi from the same formation, but they are distinguishable from each other in size and shape of the occipital condyle, foramen magnum and mastoid process of the cranium, and other postcranial features. Based on our phylogenetic analysis, A. akamatsui might have split from P. muramotoi at the late Miocene in the western North Pacific. This rapid diversification of the archaic odobenids occurred with a combination of marine regression and transgression, which provided geological isolation among the common ancestors of extinct odobenids.
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The strict consensus tree of equally weighted analysis of Archaeodobenus akamatsui and the Odobenidae, with Bremer support at nodes.
2015Co-Authors: Yoshihiro Tanaka, Naoki KohnoAbstract:The strict consensus tree of equally weighted analysis of Archaeodobenus akamatsui and the Odobenidae, with Bremer support at nodes.
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cope s rule and the evolution of body size in pinnipedimorpha mammalia carnivora
Evolution, 2015Co-Authors: Morgan Churchill, Mark T Clementz, Naoki KohnoAbstract:Cope's rule describes the evolutionary trend for animal lineages to increase in body size over time. In this study, we tested the validity of Cope's rule for a marine mammal clade, the Pinnipedimorpha, which includes the extinct Desmatophocidae, and extant Phocidae (earless seals), Otariidae (fur seals and sea lions), and Odobenidae (walruses). We tested for the presence of Cope's rule by compiling a large dataset of body size data for extant and fossil pinnipeds and then examined how body size evolved through time. We found that there was a positive relationship between geologic age and body size. However, this trend is the result of differences between early assemblages of small-bodied pinnipeds (Oligocene to early Miocene) and later assemblages (middle Miocene to Pliocene) for which species exhibited greater size diversity. No significant differences were found between the number of increases or decreases in body size within Pinnipedimorpha or within specific pinniped clades. This suggests that the pinniped body size increase was driven by passive diversification into vacant niche space, with the common ancestor of Pinnipedimorpha occurring near the minimum adult body size possible for a marine mammal. Based upon the above results, the evolutionary history of pinnipeds does not follow Cope's rule.
Robert W. Boessenecker - One of the best experts on this subject based on the ideXlab platform.
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The Origin and Evolutionary Biology of Pinnipeds: Seals, Sea Lions, and Walruses
Annual Review of Earth and Planetary Sciences, 2018Co-Authors: Annalisa Berta, Morgan Churchill, Robert W. BoesseneckerAbstract:The oldest definitive pinniped fossils date from approximately 30.6–23 million years ago (Ma) in the North Pacific. Pinniped monophyly is consistently supported; the group shares a common ancestry with arctoid carnivorans, either ursids or musteloids. Crown pinnipeds comprise the Otariidae (fur seals and sea lions), Odobenidae (walruses), and Phocidae (seals), with paraphyletic “enaliarctines” falling outside the crown group. The position of extinct Desmatophocidae is debated; they are considered to be closely related to both otariids and odobenids or, alternatively, to phocids. Both otariids and odobenids are known from the North Pacific, diverging approximately 19 Ma, with phocids originating in the North Atlantic or Paratethys region 19–14 Ma. Our understanding of pinniped paleobiology has been enriched by studies that incorporate anatomical and behavioral data into a phylogenetic framework. There is now evidence for sexual dimorphism in the earliest pinnipeds, heralding polygynous breeding systems, fo...
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A new Early Pliocene record of the toothless walrus Valenictus (Carnivora, Odobenidae) from the Purisima Formation of Northern California
2017Co-Authors: Robert W. BoesseneckerAbstract:The walrus (Odobenus rosmarus) is a large tusked molluskivore that inhabits the Arctic and is the sole living member of the family Odobenidae. In contrast to the modern walrus, extinct walruses lived in temperate and even subtropical climates as far south as Baja California and Japan in the Pacific, and Florida and Morocco in the Atlantic. Multispecies walrus assemblages are now documented from several localities in the North Pacific, the center of origin for the family. The genus Valenictus is a toothless dense-boned walrus reported from several localities in southern California and Baja California. An isolated astragalus from lower Pliocene (5.33–4.89 Ma, Zanclean correlative) sediments of the Purisima Formation of northern California (Santa Cruz County, California) matches the highly derived morphology of Valenictus chulavistensis, and is identifiable as Valenictus sp. This specimen is the first record of Valenictus from the Purisima Formation and the first from northern California.
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The oldest known fur seal
Biology letters, 2015Co-Authors: Robert W. Boessenecker, Morgan ChurchillAbstract:The poorly known fossil record of fur seals and sea lions (Otariidae) does not reflect their current diversity and widespread abundance. This limited fossil record contrasts with the more complete fossil records of other pinnipeds such as walruses (Odobenidae). The oldest known otariids appear 5–6 Ma after the earliest odobenids, and the remarkably derived craniodental morphology of otariids offers few clues to their early evolutionary history and phylogenetic affinities among pinnipeds. We report a new otariid, Eotaria crypta, from the lower middle Miocene ‘Topanga’ Formation (15–17.1 Ma) of southern California, represented by a partial mandible with well-preserved dentition. Eotaria crypta is geochronologically intermediate between ‘enaliarctine’ stem pinnipedimorphs (16.6–27 Ma) and previously described otariid fossils (7.3–12.5 Ma), as well as morphologically intermediate by retaining an M2 and a reduced M1 metaconid cusp and lacking P2–4 metaconid cusps. Eotaria crypta eliminates the otariid ghost lineage and confirms that otariids evolved from an ‘enaliarctine’-like ancestor.
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Examples of biogenic bone modifications encountered during this study.
2014Co-Authors: Robert W. Boessenecker, Frank A. Perry, James G. SchmittAbstract:(A) fur seal radius (Pinnipedia: Otariidae, UCMP 219009) with mammalian bite marks (see Boessenecker and Perry, 2011). (B) Porpoise cranium (Odontoceti: Phocoenidae, undescribed genus; UCMP 219504) with two sets of linear bite marks (C). (D) Bone fragment (Mysticeti indeterminate; UCMP uncatalogued) with numerous circular pits. (E–F) Walrus tooth (Pinnipedia: Odobenidae: Dusignathinae; UCMP 219436) with irregular bioerosion tunnels; (G) magnified view of bioeroded surface. (H) Dolphin humerus (Odontoceti indeterminate; UCMP 219361) with bioeroded gallery. (I) Baleen whale mandible fragment (Mysticeti indeterminate; UCMP 219089) with parallel linear tooth marks. (J) Dolphin phalanx (Odontoceti indeterminate; UCMP 219627) with linear tooth mark. (K) Fur seal distal femur (Pinnipedia: Otariidae: Thalassoleon sp., cf. T. macnallyae; UCMP 219658) with gastric acid pitting (L) and linear scrape marks (M).
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A Reevaluation of the Morphology, Paleoecology, and Phylogenetic Relationships of the Enigmatic Walrus Pelagiarctos
PloS one, 2013Co-Authors: Robert W. Boessenecker, Morgan ChurchillAbstract:Background A number of aberrant walruses (Odobenidae) have been described from the Neogene of the North Pacific, including specialized suction-feeding and generalist fish-eating taxa. At least one of these fossil walruses has been hypothesized to have been a specialized predator of other marine mammals, the middle Miocene walrus Pelagiarctos thomasi from the Sharktooth Hill Bonebed of California (16.1–14.5 Ma). Methodology/Principal Findings A new specimen of Pelagiarctos from the middle Miocene “Topanga” Formation of southern California (17.5–15 Ma) allows a reassessment of the morphology and feeding ecology of this extinct walrus. The mandibles of this new specimen are robust with large canines, bulbous premolars with prominent paraconid, metaconid, hypoconid cusps, crenulated lingual cingula with small talonid basins, M2 present, double-rooted P3–M1, single-rooted P1 and M2, and a P2 with a bilobate root. Because this specimen lacks a fused mandibular symphysis like Pelagiarctos thomasi, it is instead referred to Pelagiarctos sp. This specimen is more informative than the fragmentary holotype of Pelagiarctos thomasi, permitting Pelagiarctos to be included within a phylogenetic analysis for the first time. Analysis of a matrix composed of 90 cranial, dental, mandibular and postcranial characters indicates that Pelagiarctos is an early diverging walrus and sister to the late Miocene walrus Imagotaria downsi. We reevaluate the evidence for a macropredatory lifestyle for Pelagiarctos, and we find no evidence of specialization towards a macrophagous diet, suggesting that Pelagiarctos was a generalist feeder with the ability to feed on large prey. Conclusions/Significance This new specimen of Pelagiarctos adds to the knowledge of this problematic taxon. The phylogenetic analysis conclusively demonstrates that Pelagiarctos is an early diverging walrus. Pelagiarctos does not show morphological specializations associated with macrophagy, and was likely a generalist predator, feeding on fish, invertebrates, and the occasional warm-blooded prey item.
Ulfur Arnason - One of the best experts on this subject based on the ideXlab platform.
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Pinniped phylogeny and a new hypothesis for their origin and dispersal
Molecular Phylogenetics and Evolution, 2006Co-Authors: Ulfur Arnason, Evgeny A. Petrov, Niles Lehman, Anette Gullberg, Axel Janke, Morgan Kullberg, Risto VäinöläAbstract:The relationships and the zoogeography of the three extant pinniped families, Otariidae (sea lions and fur seals), Odobenidae (one extant species, the walrus), and Phocidae (true seals), have been contentious. Here, we address these topics in a molecular study that includes all extant species of true seals and sea lions, four fur seals and the walrus. Contrary to prevailing morphological views the analyses conclusively showed monophyletic Pinnipedia with a basal split between Otarioidea (Otariidae + Odobenidae) and Phocidae. The northern fur seal was the sister to all remaining otariids and neither sea lions nor arctocephaline fur seals were recognized as monophyletic entities. The basal Phocidae split between Monachinae (monk seals and southern true seals) and Phocinae (northern true seals) was strongly supported. The phylogeny of the Phocinae suggests that the ancestors of Cystophora (hooded seal) and the Phocini (e.g. harp seal, ringed seal) adapted to Arctic conditions and ice-breeding before 12 MYA (million years ago) as supported by the white natal coat of these lineages. The origin of the endemic Caspian and Baikal seals was dated well before the onset of major Pleistocene glaciations. The current findings, together with recent advances in pinniped paleontology, allow the proposal of a new hypothesis for pinniped origin and early dispersal. The hypothesis posits that pinnipeds originated on the North American continent with early otarioid and otariid divergences taking place in the northeast Pacific and those of the phocids in coastal areas of southeast N America for later dispersal to colder environments in the N Atlantic and the Arctic Basin, and in Antarctic waters. (c) 2006 Elsevier Inc. All rights reserved.
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Pinniped phylogeny and a new hypothesis for their origin and dispersal.
Molecular phylogenetics and evolution, 2006Co-Authors: Ulfur Arnason, Evgeny A. Petrov, Niles Lehman, Anette Gullberg, Axel Janke, Morgan Kullberg, Risto VäinöläAbstract:The relationships and the zoogeography of the three extant pinniped families, Otariidae (sea lions and fur seals), Odobenidae (one extant species, the walrus), and Phocidae (true seals), have been contentious. Here, we address these topics in a molecular study that includes all extant species of true seals and sea lions, four fur seals and the walrus. Contrary to prevailing morphological views the analyses conclusively showed monophyletic Pinnipedia with a basal split between Otarioidea (Otariidae+Odobenidae) and Phocidae. The northern fur seal was the sister to all remaining otariids and neither sea lions nor arctocephaline fur seals were recognized as monophyletic entities. The basal Phocidae split between Monachinae (monk seals and southern true seals) and Phocinae (northern true seals) was strongly supported. The phylogeny of the Phocinae suggests that the ancestors of Cystophora (hooded seal) and the Phocini (e.g. harp seal, ringed seal) adapted to Arctic conditions and ice-breeding before 12 MYA (million years ago) as supported by the white natal coat of these lineages. The origin of the endemic Caspian and Baikal seals was dated well before the onset of major Pleistocene glaciations. The current findings, together with recent advances in pinniped paleontology, allow the proposal of a new hypothesis for pinniped origin and early dispersal. The hypothesis posits that pinnipeds originated on the North American continent with early otarioid and otariid divergences taking place in the northeast Pacific and those of the phocids in coastal areas of southeast N America for later dispersal to colder environments in the N Atlantic and the Arctic Basin, and in Antarctic waters.
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Mammalian mitogenomic relationships and the root of the eutherian tree.
Proceedings of the National Academy of Sciences of the United States of America, 2002Co-Authors: Ulfur Arnason, Joseph A. Adegoke, Kristina Bodin, Erik W. Born, Roger V. Short, Maria A Nilsson, Xiufeng Xu, Anette Gullberg, Axel JankeAbstract:The strict orthology of mitochondrial (mt) coding sequences has promoted their use in phylogenetic analyses at different levels. Here we present the results of a mitogenomic study (i.e., analysis based on the set of protein-coding genes from complete mt genomes) of 60 mammalian species. This number includes 11 new mt genomes. The sampling comprises all but one of the traditional eutherian orders. The previously unrepresented order Dermoptera (flying lemurs) fell within Primates as the sister group of Anthropoidea, making Primates paraphyletic. This relationship was strongly supported. Lipotyphla (“insectivores”) split into three distinct lineages: Erinaceomorpha, Tenrecomorpha, and Soricomorpha. Erinaceomorpha was the basal eutherian lineage. Sirenia (dugong) and Macroscelidea (elephant shrew) fell within the African clade. Pholidota (pangolin) joined the Cetferungulata as the sister group of Carnivora. The analyses identified monophyletic Pinnipedia with Otariidae (sea lions, fur seals) and Odobenidae (walruses) as sister groups to the exclusion of Phocidae (true seals).
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A molecular view of pinniped relationships with particular emphasis on the true seals
Journal of Molecular Evolution, 1995Co-Authors: Ulfur Arnason, Kristina Bodin, Anette Gullberg, Christina Ledje, Mouchaty SuzetteAbstract:Phylogenetic analysis of conservative nucleotide substitutions in 18 complete sequences of the mitochondrial cytochrome β gene of Phocidae (true seals), Odobenidae (walruses), and Otariidae (sea lions and fur seals), plus three ursid and three felid sequences, identified the pinnipeds as monophyletic with Otariidae and Odobenidae on a common evolutionary branch. Analysis of total nucleotide differences separated the evolutionary lineages of northern and southern phocids. Both lineages are distinct from the most ancestral phocid genus, Monachus (monk seals), represented by the Hawaiian monk seal. The inclusion of the Hawaiian monk seal in the subfamily Monachinae makes the subfamily paraphyletic. Among the northern phocids, the hooded seal (genus Cystophora , chromosome number 2 n = 34) is sister taxon to the Phoca complex. The Phoca complex, which is characterized by the chromosome number 2 n = 32, includes genus Phoca and the monotypic genus Halichoerus (grey seal). The comparison does not support a generic distinction of Halichoerus within the Phoca complex. The present data suggest that Cystophora and Phoca separated ⩾6 million years ago. Among the southern phocids the close molecular relationship of the Weddell and leopard seals relative to their morphological distinction exemplifies rapid adaptation to different ecological niches. This result stands in contrast to the limited morphological differentiation relative to the pronounced molecular distinctions that may occur within the Phoca complex.
Curtis Strobeck - One of the best experts on this subject based on the ideXlab platform.
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Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets.
Molecular Phylogenetics and Evolution, 2006Co-Authors: Tara L. Fulton, Curtis StrobeckAbstract:Abstract Phylogenetic relationships of 79 caniform carnivores were addressed based on four nuclear sequence-tagged sites (STS) and one nuclear exon, IRBP, using both supertree and supermatrix analyses. We recovered the three major arctoid lineages, Ursidae, Pinnipedia, and Musteloidea, as monophyletic, with Ursidae (bears) strongly supported as the basal arctoid lineage. Within Pinnipedia, Phocidae (true seals) were sister to the Otaroidea [Otariidae (fur seals and sea lions) and Odobenidae (walrus)]. Phocid subfamily and tribal designations were supported, but the otariid subfamily split between fur seals and sea lions was not. All family designations within Musteloidea were strongly supported: Mephitidae (skunks), Ailuridae (monotypic red panda), Mustelidae (weasels, badgers, otters), and Procyonidae (raccoons). A novel hypothesis for the position of the red panda was recovered, placing it as branching after Mephitidae and before Mustelidae + Procyonidae. Within Mustelidae, subfamily taxonomic changes are considered. This study represents the most comprehensive sampling to date of the Caniformia in a molecular study and contains the most complete molecular phylogeny for the Procyonidae. Our data set was also used in an empirical examination of the effect of missing data on both supertree and supermatrix analyses. Sequence for all genes in all taxa could not be obtained, so two variants of the data set with differing amounts of missing data were examined. The amount of missing data did not have a strong effect; instead, phylogenetic resolution was more dependent on the presence of sufficient informative characters. Supertree and supermatrix methods performed equivalently with incomplete data and were highly congruent; conflicts arose only in weakly supported areas, indicating that more informative characters are required to confidently resolve close species relationships.
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A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes
Molecular phylogenetics and evolution, 2005Co-Authors: Isabelle Delisle, Curtis StrobeckAbstract:Evolutionary relationships of the order Carnivora have been extensively studied. However, phylogenetic studies based on different types of data, species samples, and methods of analysis provide contradictory results. Consequently, phylogenetic relationships of Carnivora remain contentious. Here, the sequence of 12 mitochondrial genes (10,842 nucleotides) from a total of 38 carnivore species was used to investigate the phylogeny of the caniform (dog-like) carnivores. An analysis using maximum parsimony, maximum likelihood, and Bayesian approaches provided a unique and well-supported solution to most contentious relationships within Caniformia. The clade Arctoidea was shown to consist of three major monophyletic groups: Pinnipedia, Ursidae, and Musteloidea. Within Pinnipedia, the families Otariidae and Odobenidae formed a clade, sister to Phocidae. Within Musteloidea, there was a sister relationship between true mustelids (i.e., excluding the skunks) and procyonids, and between ailurids and mephitids (skunks). Despite a high level of confidence obtained at most nodes, uncertainty remained about the relative position of the three major arctoid clades.
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a phylogeny of the extant phocidae inferred from complete mitochondrial dna coding regions
Molecular Phylogenetics and Evolution, 2004Co-Authors: Corey S. Davis, Donald B Siniff, Ian Stirling, Isabelle Delisle, Curtis StrobeckAbstract:Abstract Despite extensive interest in the systematics of Pinnipedia, questions remain concerning phylogenetic relationships within the Phocidae or “true” seals. Relationships within the phocids and their placement relative to the remaining pinnipeds and major lineages of arctoid carnivores were examined using a large molecular data set consisting of 12 mitochondrial protein coding genes. Phylogenetic analysis including 15 extant species of the Phocidae, and representatives of the Otariidae, Odobenidae, Ursidae, Mustelidae, Canidae, and Felidae confirmed the monophyletic origins of the Pinnipedia within the Arctoidea. Slightly more support was found for an ursid affinity of the pinnipeds, however, this relationship remains contentious. The Phocidae were placed as the sister group to a common odobenid–otariid clade. Within the family Phocidae, strong support for the traditionally accepted subfamilies Phocinae (northern seals), and Monachinae (southern seals plus monk seals) was found. In contrast to recent suggestions, a monophyletic Monachus was strongly supported and was placed in a deep branching position within the Monachinae. Evidence from sequence divergence under a maximum likelihood model illustrated that the rarely used tribal distinction within the Monachinae are comparable, in terms of evolutionary distance, to accepted tribal distinctions within the Phocinae. In addition, results suggest that Pagophilus should be accepted as a genus within the Phocini. Sequence divergence between Phoca, Pusa, and Halichoerus is minimal, supporting a taxonomic reclassification of the three genera into an emended genus Phoca, without subgeneric distinctions.
