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Petri Toronen - One of the best experts on this subject based on the ideXlab platform.

  • Selection of informative clusters from hierarchical cluster tree with gene classes-1
    2011
    Co-Authors: Petri Toronen
    Abstract:

    Copyright information:Taken from "Selection of informative clusters from hierarchical cluster tree with gene classes"BMC Bioinformatics 2004;5():32-32.Published online 25 Mar 2004PMCID:PMC407846.Copyright © 2004 Toronen; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. are linked to table by the ordinal numbers in table . Three coloured cluster groups are: blue, protein synthesis; red, energy and carbohydrate metabolism; green, cell cycle, differentiation and growth, nucleus, chromosome structure and mRNA processing. The rest of the clusters are black. Coloured groups are shown in detail in table (MIPS classes). The figure is shown also as a Postscript File for separate zooming and printing in figure 8 []. The tree is analyzed more in detail in the text

  • Selection of informative clusters from hierarchical cluster tree with gene classes-2
    2011
    Co-Authors: Petri Toronen
    Abstract:

    Copyright information:Taken from "Selection of informative clusters from hierarchical cluster tree with gene classes"BMC Bioinformatics 2004;5():32-32.Published online 25 Mar 2004PMCID:PMC407846.Copyright © 2004 Toronen; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. are presented for comparison with fig. . Clusters are linked to table 4 [] by the ordinal numbers in the data File. Three coloured cluster groups are the same as in figure and they are shown in detail in table (SGD/GO classes). Notice that although the clusters are placed differently than in fig. , similar functional classes are often associated to the same cluster tree branches. The tree is analyzed more in detail in the text. The figure is shown also as a Postscript File for separate zooming and printing in figure 9 [see ]

Janet M. Thornton - One of the best experts on this subject based on the ideXlab platform.

  • domplot a program to generate schematic diagrams of the structural domain organization within proteins annotated by ligand contacts
    Protein Engineering, 1999
    Co-Authors: Annabel E Todd, Janet M. Thornton
    Abstract:

    A program is described for automatically generating schematic linear representations of protein chains in terms of their structural domains. The program requires the coordinates of the chain, the domain assignment, PROSITE information and a File listing all intermolecular interactions in the protein structure. The output is a Postscript File in which each protein is represented by a set of linked boxes, each box corresponding to all or part of a structural domain. PROSITE motifs and residues involved in ligand interactions are highlighted. The diagrams allow immediate visualization of the domain arrangement within a protein chain, and by providing information on sequence motifs, and metal ion, ligand and DNA binding at the domain level, the program facilitates detection of remote evolutionary relationships between proteins.

  • ligplot a program to generate schematic diagrams of protein ligand interactions
    Protein Engineering, 1995
    Co-Authors: Andrew C Wallace, Roman A Laskowski, Janet M. Thornton
    Abstract:

    The LIGPLOT program automatically generates schematic 2-D representations of protein-ligand complexes from standard Protein Data Bank File input. The output is a colour, or black-and-white, Postscript File giving a simple and informative representation of the intermolecular interactions and their strengths, including hydrogen bonds, hydrophobic interactions and atom accessibilities. The program is completely general for any ligand and can also be used to show other types of interaction in proteins and nucleic acids. It was designed to facilitate the rapid inspection of many enzyme complexes, but has found many other applications.

Carlos Areces - One of the best experts on this subject based on the ideXlab platform.

  • Testing Provers on a Grid - Framework Description
    2016
    Co-Authors: Carlos Areces, Ra Lorenzo
    Abstract:

    Abstract. GridTest is a framework for testing automated theorem prov-ers using randomly generated formulas. It can be used to run tests locally, in a single computer, or in a computer grid. It automatically generates a report as a Postscript File which, among others, includes graphs for time comparison. We have found GridTest extremely useful for testing and comparing the performance of different automated theorem provers (for hybrid, modal, first order and description logics). We present GridTest in this framework description in the hope that it might be useful for the general community working in automated deduction. 1 Testing Automated Provers Testing a system is an invaluable source of information about its behaviour. But testing can be difficult and time consuming. This is particularly the case for systems that have to deal with very diverse input (where carrying out exhaus-tive testing would be impossible), and which need complex computation (tha

  • Testing Provers on a Grid - Framework Description
    2009
    Co-Authors: Carlos Areces, Daniel Gorin, Alejandra Lorenzo, Mariano Perez Rodriguez
    Abstract:

    GridTest is a framework for testing automated theorem provers using randomly generated formulas. It can be used to run tests locally, in a single computer, or in a computer grid. It automatically generates a report as a Postscript File which, among others, includes graphs for time comparison. We have found GridTest extremely useful for testing and comparing the performance of different automated theorem provers (for hybrid, modal, first order and description logics). We present GridTest in this framework description in the hope that it might be useful for the general community working in automated deduction.

Jenny Smith - One of the best experts on this subject based on the ideXlab platform.

  • Guidelines for Preparing a Paper for IDAMAP-98 (based on ECAI-98 paper preparation instructions)
    2008
    Co-Authors: Other Jenny, Jenny Smith
    Abstract:

    . The purpose of this paper is to show a contributor the required style for a paper for IDAMAP-98. The specifications for layout are described so that non-L AT E X users can create their own style sheet to achieve the same layout. The source for the sample File is available for L AT E X users. The Postscript File is available for all. 1 GENERAL SPECIFICATIONS The following details should allow contributors to set up the general page description for their paper: 1. The paper is set in two columns each 20.5 picas (86 mm) wide with a column separator of 1.5 picas (6 mm). 2. The typeface is Times Modern Roman. 3. The body text size is 9 point (3.15 mm) on a body of 11 point (3.85 mm) (i.e. 61 lines of text). 4. The running feet are set 1.5 picas (6 mm) below the last line of text. 2 TITLE, AUTHOR AND AFFILIATION 2.1 Title The title is set in 20 point (7 mm) bold with leading of 22 point (7.7 mm), centred over the full text measure, with 1.5 picas (6 mm) of space before and after. 2.2 Aut..

  • Guidelines for Preparing a Paper for the European Conference on Artificial Intelligence
    2007
    Co-Authors: Geeti Granger Jenny, Jenny Smith
    Abstract:

    . The purpose of this paper is to show a contributor the required style for a paper for ECAI 94. The specifications for layout are described so that non-L A T E X users can create their own style sheet to achieve the same layout. The source for the sample File is available for L A T E X users. The Postscript File is available for all. 1 GENERAL SPECIFICATIONS The following details should allow contributors to set up the general page description for their paper: 1. The paper is set in two columns each 20.5 picas (86 mm) wide with a column separator of 1.5 picas (6 mm). 2. The typeface is Times Modern Roman. 3. The body text size is 9 point (3.15 mm) on a body of 11 point (3.85 mm) (i.e. 61 lines of text). 4. The running feet are set 1.5 picas (6 mm) below the last line of text. 2 TITLE, AUTHOR, AFFILIATION, COPYRIGHT AND RUNNING FEET 2.1 Title The title is set in 20 point (7 mm) bold with leading of 22 point (7.7 mm), centred over the full text measure, with 1.5 picas (6 mm) of space..

  • Guidelines for Preparing a Paper for European Conference on Artificial Intelligence
    2007
    Co-Authors: Other Jenny, Jenny Smith
    Abstract:

    . The purpose of this paper is to show a contributor the required style for a paper for ECAI 98. The specifications for layout are described so that non-L AT E X users can create their own style sheet to achieve the same layout. The source for the sample File is available for L A T E X users. The Postscript File is available for all. 1 GENERAL SPECIFICATIONS The following details should allow contributors to set up the general page description for their paper: 1. The paper is set in two columns each 20.5 picas (86 mm) wide with a column separator of 1.5 picas (6 mm). 2. The typeface is Times Modern Roman. 3. The body text size is 9 point (3.15 mm) on a body of 11 point (3.85 mm) (i.e. 61 lines of text). 4. The running feet are set 1.5 picas (6 mm) below the last line of text. 2 TITLE, AUTHOR, AFFILIATION, COPYRIGHT AND RUNNING FEET 2.1 Title The title is set in 20 point (7 mm) bold with leading of 22 point (7.7 mm), centred over the full text measure, with 1.5 picas (6 mm) of space..

Maštera Martin - One of the best experts on this subject based on the ideXlab platform.

  • Commands for 2D plotter
    Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií, 2013
    Co-Authors: Maštera Martin
    Abstract:

    This work deals with parameterized 2D plotter, which function is to draw arbitrary shapes, which are loaded from a Postscript File generated from AutoCAD. From that File are gained data, which are converted into shapes parameters. Communication between PC and PLC is provided via an OPC server from Rockwell Automation. In RSLogic 5000 application, which is used to program PLC from Rockwell Automation, is created program to draw individual shapes on paper

  • Commands for 2D plotter
    Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií, 2013
    Co-Authors: Maštera Martin
    Abstract:

    Tato práce se zabývá parametrizováním 2D zapisovače, jehož funkcí je vykreslovat libovolné obrazce, které jsou načítány z Postscriptového souboru vygenerovaného z programu AutoCad. Na počítači se z tohoto Postscriptového souboru získají data, která se přepočítají na parametry jednotlivých obrazců. Komunikace mezi po čítačem a PLC je zajištěna přes OPC server od firmy Rockwell Automation. V aplikaci RSLogic 5000, která slouží k naprogramování PLC od firmy Rockwell Automation, je vytvořen program, který jednotlivé obrazce vykreslí na papír.This work deals with parameterized 2D plotter, which function is to draw arbitrary shapes, which are loaded from a Postscript File generated from AutoCAD. From that File are gained data, which are converted into shapes parameters. Communication between PC and PLC is provided via an OPC server from Rockwell Automation. In RSLogic 5000 application, which is used to program PLC from Rockwell Automation, is created program to draw individual shapes on paper.