Rana temporaria

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Juha Merilä - One of the best experts on this subject based on the ideXlab platform.

  • geographic variation in sex chromosome differentiation in the common frog Rana temporaria
    Molecular Ecology, 2014
    Co-Authors: Nicolas Rodrigues, Juha Merilä, Cecile Patrelle, Nicolas Perrin
    Abstract:

    In sharp contrast with birds and mammals, sex-determination systems in ectothermic vertebrates are often highly dynamic and sometimes multifactorial. Both environmental and genetic effects have been documented in common frogs (Rana temporaria). One genetic linkage group, mapping to the largest pair of chromosomes and harbouring the candidate sex-determining gene Dmrt1, associates with sex in several populations throughout Europe, but association varies both within and among populations. Here, we show that sex association at this linkage group differs among populations along a 1500-km transect across Sweden. Genetic differentiation between sexes is strongest (F-ST = 0.152) in a northern-boreal population, where male-specific alleles and heterozygote excesses (F-IS = -0.418 in males, +0.025 in females) testify to a male-heterogametic system and lack of X-Y recombination. In the southernmost population (nemoral climate), in contrast, sexes share the same alleles at the same frequencies (F-ST = 0.007 between sexes), suggesting unrestricted recombination. Other populations show intermediate levels of sex differentiation, with males falling in two categories: some cluster with females, while others display male-specific Y haplotypes. This polymorphism may result from differences between populations in the patterns of X-Y recombination, co-option of an alternative sex-chromosome pair, or a mixed sex-determination system where maleness is controlled either by genes or by environment depending on populations or families. We propose approaches to test among these alternative models, to disentangle the effects of climate and phylogeography on the latitudinal trend, and to sort out how this polymorphism relates to the 'sexual races' described in common frogs in the 1930s.

  • the role of golf courses in maintaining genetic connectivity between common frog Rana temporaria populations in an urban setting
    Conservation Genetics, 2013
    Co-Authors: Jarmo Saarikivi, A Granroth, Theresa Knopp, Juha Merilä
    Abstract:

    We studied population size, genetic diversity and differentiation of common frog (Rana temporaria) populations at urban golf courses and reference natural ponds in the greater Helsinki region, southern Finland. A total of 248 tadpoles from 12 locations (six golf courses, six reference sites) were genotyped with 13 polymorphic microsatellite markers. The most urban populations, situated in northern Helsinki, were the largest breeding sites having >120 (golf courses) and >200 (reference sites) spawn clumps at the time of sampling. On average, there was no difference in the number of spawns between the anthropogenic ponds at golf courses and the natural water bodies. Genetic variation within populations was substantial (HO = 0.68) while genetic differentiation between populations was low (FST = 0.016; average distance = 17.6 km). The golf course populations did not differ from natural populations in terms of genetic variability or differentiation. Hence, our results suggest that golf courses contribute positively to urban amphibian populations by providing suitable water bodies for reproduction and green corridors for dispersal, thus preventing isolation and loss of genetic variability within populations.

  • First-generation linkage map for the common frog Rana temporaria reveals sex-linkage group.
    Heredity, 2011
    Co-Authors: Jose M. Cano, Anssi Laurila, Johanna Vilkki, Juha Merilä
    Abstract:

    The common frog (Rana temporaria) has become a model species in the fields of ecology and evolutionary biology. However, lack of genomic resources has been limiting utility of this species for detailed evolutionary genetic studies. Using a set of 107 informative microsatellite markers genotyped in a large full-sib family (800 F1 offspring), we created the first linkage map for this species. This partial map—distributed over 15 linkage groups—has a total length of 1698.8 cM. In line with the fact that males are the heterogametic sex in this species and a reduction of recombination is expected, we observed a lower recombination rate in the males (map length: 1371.5 cM) as compared with females (2089.8 cM). Furthermore, three loci previously documented to be sex-linked (that is, carrying male-specific alleles) in adults from the wild mapped to the same linkage group. The linkage map described in this study is one of the densest ones available for amphibians. The discovery of a sex linkage group in Rana temporaria, as well as other regions with strongly reduced male recombination rates, should help to uncover the genetic underpinnings of the sex-determination system in this species. As the number of linkage groups found (n=15) is quite close to the actual number of chromosomes (n=13), the map should provide a useful resource for further evolutionary, ecological and conservation genetic work in this and other closely related species.

  • predation and competition mediated brain plasticity in Rana temporaria tadpoles
    Journal of Evolutionary Biology, 2010
    Co-Authors: Abigel Gonda, Anssi Laurila, Gábor Herczeg, Nina Trokovic, Juha Merilä
    Abstract:

    An increasing number of studies have demonstrated phenotypic plasticity in brain size and architecture in response to environmental variation. However, our knowledge on how brain architecture is affected by commonplace ecological interactions is rudimentary. For example, while intraspecific competition and risk of predation are known to induce adaptive plastic modifications in morphology and behaviour in a wide variety of organisms, their effects on brain development have not been studied. We studied experimentally the influence of density and predation risk on brain development in common frog (Rana temporaria) tadpoles. Tadpoles grown at low density and under predation risk developed smaller brains than tadpoles at the other treatment combinations. Further, at high densities, tadpoles developed larger optic tecta and smaller medulla oblongata than those grown at low densities. These results demonstrate that ecological interactions - like intraspecific competition and predation risk - can have strong effects on brain development in lower vertebrates.

  • Sex reversal and primary sex ratios in the common frog (Rana temporaria)
    Molecular Ecology, 2010
    Co-Authors: Jussi Alho, Chikako Matsuba, Juha Merilä
    Abstract:

    Sex reversal has been suggested to have profound implications for the evolution of sex chromosomes and population dynamics in ectotherms. Occasional sex reversal of genetic males has been hypothesized to prevent the evolutionary decay of nonrecombining Y chromosomes caused by the accumulation of deleterious mutations. At the same time, sex reversals can have a negative effect on population growth rate. Here, we studied phenotypic and genotypic sex in the common frog (Rana temporaria) in a subarctic environment, where strongly female-biased sex ratios have raised the possibility of frequent sex reversals. We developed two novel sex-linked microsatellite markers for the species and used them with a third, existing marker and a Bayesian modelling approach to study the occurrence of sex reversal and to determine primary sex ratios in egg clutches. Our results show that a significant proportion (0.09, 95% credible interval: 0.04-0.18) of adults that were genetically female expressed the male phenotype, but there was no evidence of sex reversal of genetic males that is required for counteracting the degeneration of Y chromosome. The primary sex ratios were mostly equal, but three clutches consisted only of genetic females and three others had a significant female bias. Reproduction of the sex-reversed genetic females appears to create all-female clutches potentially skewing the population level adult sex-ratio consistent with field observations. However, based on a simulation model, such a bias is expected to be small and transient and thus does not fully explain the observed female-bias in the field.

Anssi Laurila - One of the best experts on this subject based on the ideXlab platform.

  • adaptive genomic variation associated with environmental gradients along a latitudinal cline in Rana temporaria
    bioRxiv, 2018
    Co-Authors: Alexandra Jansen Van Rensburg, Anssi Laurila, Maria Cortazarchinarro, Josh Van Buskirk
    Abstract:

    Rana temporaria occur across a large geographic and environmental gradient in Scandinavia. Several studies involving common garden experiments have established adaptive divergence across the gradient. The main objective of this study was to determine the extent of neutral and adaptive genetic divergence across the latitudinal gradient. Here we sequence genome-wide markers for 15 populations from six regions sampled from southern Sweden to Finland. Using a multivariate approach we find that 68% of the genomic variation is associated with climate or geographically structured climate. Using outlier scans and environmental association analyses we identify a set of potentially adaptive loci and examine their change in allele frequency associated with different climatic variables. Using a gradient forest analysis we identify points along three of the climate variables where allele frequencies change more rapidly than expected if it were a linear association. We identify a large threshold effect associated with BIO5 (mean temperature during the warmest month) which is seen as a rapid change in southern Sweden. By comparing the change in neutral and adaptive allele frequencies across the whole gradient, we identify southern Sweden as a region with the largest divergence between the datasets. This suggests small changes in the climate may result in a mismatch between the adaptive genotypes and the environment in these populations. Overall this study shows that genomic analyses can provide a powerful complement to common garden experiments to improve our understanding of adaptive divergence across heterogeneous landscapes.

  • molecular phenotyping of maternally mediated parallel adaptive divergence within Rana arvalis and Rana temporaria
    Molecular Ecology, 2016
    Co-Authors: Anssi Laurila, Katja Rasanen, Longfei Shu, M Suter
    Abstract:

    When similar selection acts on the same traits in multiple species or populations, parallel evolution can result in similar phenotypic changes, yet the underlying molecular architecture of parallel phenotypic divergence can be variable. Maternal effects can influence evolution at ecological timescales and facilitate local adaptation, but their contribution to parallel adaptive divergence is unclear. In this study, we (i) tested for variation in embryonic acid tolerance in a common garden experiment and (ii) used molecular phenotyping of egg coats to investigate the molecular basis of maternally mediated parallel adaptive divergence in two amphibian species (Rana arvalis and Rana temporaria). Our results on three R. arvalis and two R. temporaria populations show that adaptive divergence in embryonic acid tolerance is mediated via maternally derived egg coats in both species. We find extensive polymorphism in egg jelly coat glycoproteins within both species and that acid-tolerant clutches have more negatively charged egg jelly - indicating that the glycosylation status of the jelly coat proteins is under divergent selection in acidified environments, likely due to its impact on jelly water balance. Overall, these data provide evidence for parallel mechanisms of adaptive divergence in two species. Our study highlights the importance of studying intraspecific molecular variation in egg coats and, specifically, their glycoproteins, to increase understanding of underlying forces maintaining variation in jelly coats.

  • First-generation linkage map for the common frog Rana temporaria reveals sex-linkage group.
    Heredity, 2011
    Co-Authors: Jose M. Cano, Anssi Laurila, Johanna Vilkki, Juha Merilä
    Abstract:

    The common frog (Rana temporaria) has become a model species in the fields of ecology and evolutionary biology. However, lack of genomic resources has been limiting utility of this species for detailed evolutionary genetic studies. Using a set of 107 informative microsatellite markers genotyped in a large full-sib family (800 F1 offspring), we created the first linkage map for this species. This partial map—distributed over 15 linkage groups—has a total length of 1698.8 cM. In line with the fact that males are the heterogametic sex in this species and a reduction of recombination is expected, we observed a lower recombination rate in the males (map length: 1371.5 cM) as compared with females (2089.8 cM). Furthermore, three loci previously documented to be sex-linked (that is, carrying male-specific alleles) in adults from the wild mapped to the same linkage group. The linkage map described in this study is one of the densest ones available for amphibians. The discovery of a sex linkage group in Rana temporaria, as well as other regions with strongly reduced male recombination rates, should help to uncover the genetic underpinnings of the sex-determination system in this species. As the number of linkage groups found (n=15) is quite close to the actual number of chromosomes (n=13), the map should provide a useful resource for further evolutionary, ecological and conservation genetic work in this and other closely related species.

  • predation and competition mediated brain plasticity in Rana temporaria tadpoles
    Journal of Evolutionary Biology, 2010
    Co-Authors: Abigel Gonda, Anssi Laurila, Gábor Herczeg, Nina Trokovic, Juha Merilä
    Abstract:

    An increasing number of studies have demonstrated phenotypic plasticity in brain size and architecture in response to environmental variation. However, our knowledge on how brain architecture is affected by commonplace ecological interactions is rudimentary. For example, while intraspecific competition and risk of predation are known to induce adaptive plastic modifications in morphology and behaviour in a wide variety of organisms, their effects on brain development have not been studied. We studied experimentally the influence of density and predation risk on brain development in common frog (Rana temporaria) tadpoles. Tadpoles grown at low density and under predation risk developed smaller brains than tadpoles at the other treatment combinations. Further, at high densities, tadpoles developed larger optic tecta and smaller medulla oblongata than those grown at low densities. These results demonstrate that ecological interactions - like intraspecific competition and predation risk - can have strong effects on brain development in lower vertebrates.

  • local selection modifies phenotypic divergence among Rana temporaria populations in the presence of gene flow
    Molecular Ecology, 2010
    Co-Authors: Alex Richterboix, Céline Teplitsky, Bjorn Rogell, Anssi Laurila
    Abstract:

    In ectotherms, variation in life history traits among populations is common and suggests local adaptation. However, geographic variation itself is not a proof for local adaptation, as genetic drift and gene flow may also shape patterns of quantitative variation. We studied local and regional variation in means and phenotypic plasticity of larval life history traits in the common frog Rana temporaria using six populations from central Sweden, breeding in either open-canopy or partially closed-canopy ponds. To separate local adaptation from genetic drift, we compared differentiation in quantitative genetic traits (Q(ST)) obtained from a common garden experiment with differentiation in presumably neutral microsatellite markers (F(ST)). We found that R. temporaria populations differ in means and plasticities of life history traits in different temperatures at local, and in F(ST) at regional scale. Comparisons of differentiation in quantitative traits and in molecular markers suggested that natural selection was responsible for the divergence in growth and development rates as well as in temperature-induced plasticity, indicating local adaptation. However, at low temperature, the role of genetic drift could not be separated from selection. Phenotypes were correlated with forest canopy closure, but not with geographical or genetic distance. These results indicate that local adaptation can evolve in the presence of ongoing gene flow among the populations, and that natural selection is strong in this system.

Gerard Strecker - One of the best experts on this subject based on the ideXlab platform.

Frank Johansson - One of the best experts on this subject based on the ideXlab platform.

  • Personality trait differences between mainland and island populations in the common frog (Rana temporaria)
    Behavioral Ecology and Sociobiology, 2013
    Co-Authors: Tomas Brodin, Miria Kaltiala Wiberg, Martin I Lind, Frank Johansson
    Abstract:

    Understanding and predicting species range expansions is an important challenge in modern ecology because of rapidly changing environments. Recent studies have revealed that consistent within-species variation in behavior (i.e., animal personality) can be imperative for dispersal success, a key process in range expansion. Here we investigate how habitat isolation can mediate differenti- ation of personality traits between recently founded island populations and the main population.We performed labora- tory studies of boldness and exploration across life stages (tadpoles and froglets) using four isolated island populations and four mainland populations of the common frog (Rana temporaria). Both tadpoles and froglets from isolated pop- ulations were bolder and more exploratory than conspecifics from the mainland. Although the pattern can be influenced by possible differences in predation pressure, we suggest that this behavioral differentiation might be the result of a disperser-dependent founder effect brought on by an isolation-driven environmental filtering of animal personal- ities. These findings can have important implications for both species persistence in the face of climate change (i.e., range expansions) and ecological invasions as well as for explaining rapid speciation in isolated patches.

  • testing the role of phenotypic plasticity for local adaptation growth and development in time constrained Rana temporaria populations
    Journal of Evolutionary Biology, 2011
    Co-Authors: Martin I Lind, Frank Johansson
    Abstract:

    Phenotypic plasticity can be important for local adaptation, because it enables individuals to survive in a novel environment until genetic changes have been accumulated by genetic accommodation. By analysing the relationship between development rate and growth rate, it can be determined whether plasticity in life-history traits is caused by changed physiology or behaviour. We extended this to examine whether plasticity had been aiding local adaptation, by investigating whether the plastic response had been fixed in locally adapted populations. Tadpoles from island populations of Rana temporaria, locally adapted to different pool-drying regimes, were monitored in a common garden. Individual differences in development rate were caused by different foraging efficiency. However, developmental plasticity was physiologically mediated by trading off growth against development rate. Surprisingly, plasticity has not aided local adaptation to time-stressed environments, because local adaptation was not caused by genetic assimilation but on selection on the standing genetic variation in development time.

  • gene flow and selection on phenotypic plasticity in an island system of Rana temporaria
    Evolution, 2011
    Co-Authors: Martin I Lind, Par K Ingvarsson, Helena Johansson, David Hall, Frank Johansson
    Abstract:

    Gene flow is often considered to be one of the main factors that constrains local adaptation in a heterogeneous environment. However, gene flow may also lead to the evolution of phenotypic plasticity. We investigated the effect of gene flow on local adaptation and phenotypic plasticity in development time in island populations of the common frog Rana temporaria which breed in pools that differ in drying regimes. This was done by investigating associations between traits (measured in a common garden experiment) and selective factors (pool drying regimes and gene flow from other populations inhabiting different environments) by regression analyses and by comparing pairwise FST values (obtained from microsatellite analyses) with pairwise QST values. We found that the degree of phenotypic plasticity was positively correlated with gene flow from other populations inhabiting different environments (among-island environmental heterogeneity), as well as with local environmental heterogeneity within each population. Furthermore, local adaptation, manifested in the correlation between development time and the degree of pool drying on the islands, appears to have been caused by divergent selection pressures. The local adaptation in development time and phenotypic plasticity is quite remarkable, because the populations are young (less than 300 generations) and substantial gene flow is present among islands.

  • pool desiccation and developmental thresholds in the common frog Rana temporaria
    Proceedings of The Royal Society B: Biological Sciences, 2008
    Co-Authors: Martin I Lind, Frida Persbo, Frank Johansson
    Abstract:

    The developmental threshold is the minimum size or condition that a developing organism must have reached in order for a life-history transition to occur. Although developmental thresholds have been observed for many organisms, inter-population variation among natural populations has not been examined. Since isolated populations can be subjected to strong divergent selection, population divergence in developmental thresholds can be predicted if environmental conditions favour fast or slow developmental time in different populations. Amphibian metamorphosis is a well-studied life-history transition, and using a common garden approach we compared the development time and the developmental threshold of metamorphosis in four island populations of the common frog Rana temporaria: two populations originating from islands with only temporary breeding pools and two from islands with permanent pools. As predicted, tadpoles from time-constrained temporary pools had a genetically shorter development time than those from permanent pools. Furthermore, the variation in development time among females from temporary pools was low, consistent with the action of selection on rapid development in this environment. However, there were no clear differences in the developmental thresholds between the populations, indicating that the main response to life in a temporary pool is to shorten the development time.

Doina Florea - One of the best experts on this subject based on the ideXlab platform.

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