Salmoniformes

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N. Alice Lee - One of the best experts on this subject based on the ideXlab platform.

  • Quantitative analysis of species specificity of two anti-parvalbumin antibodies for detecting southern hemisphere fish species demonstrating strong phylogenetic association.
    Food chemistry, 2017
    Co-Authors: Ji Liang, Chui Choo Tan, Steve L. Taylor, Joseph L. Baumert, Andreas L. Lopata, N. Alice Lee
    Abstract:

    This study aimed to develop a novel approach to determine the correlation between the parvalbumin (PAV) contents and their corresponding immunoreactivity (detectability) in southern hemisphere fish species. The immuno-detected PAV contents of the test fish species were estimated by a quantitative SDS-PAGE. A quantitative Enzyme-Linked ImmunoSorbent Assay (ELISA) was formatted to assess relative immunoreactivity of PAV. Sixteen species (forty-three percent) displayed a positive correlation with the anti-cod PAV polyclonal antibody, but no correlation with the anti-carp PAV monoclonal antibody. There was a strong phylogenetic association of the PAV immunoreactivity. Species from the order of Perciformes showed strong binding with both antibodies; whereas species from Salmoniformes, Ophidiiformes, Scombriformes, Scorpaeniformes, and Tetraodontiformes showed weak or no binding. This approach showed for the first time a statistical correlation between the PAV content and the immunoreactivity and allowed to rank the relative species/order specificity of the two antibodies for the southern hemisphere fish PAV.

Ji Liang - One of the best experts on this subject based on the ideXlab platform.

  • Quantitative analysis of species specificity of two anti-parvalbumin antibodies for detecting southern hemisphere fish species demonstrating strong phylogenetic association.
    Food chemistry, 2017
    Co-Authors: Ji Liang, Chui Choo Tan, Steve L. Taylor, Joseph L. Baumert, Andreas L. Lopata, N. Alice Lee
    Abstract:

    This study aimed to develop a novel approach to determine the correlation between the parvalbumin (PAV) contents and their corresponding immunoreactivity (detectability) in southern hemisphere fish species. The immuno-detected PAV contents of the test fish species were estimated by a quantitative SDS-PAGE. A quantitative Enzyme-Linked ImmunoSorbent Assay (ELISA) was formatted to assess relative immunoreactivity of PAV. Sixteen species (forty-three percent) displayed a positive correlation with the anti-cod PAV polyclonal antibody, but no correlation with the anti-carp PAV monoclonal antibody. There was a strong phylogenetic association of the PAV immunoreactivity. Species from the order of Perciformes showed strong binding with both antibodies; whereas species from Salmoniformes, Ophidiiformes, Scombriformes, Scorpaeniformes, and Tetraodontiformes showed weak or no binding. This approach showed for the first time a statistical correlation between the PAV content and the immunoreactivity and allowed to rank the relative species/order specificity of the two antibodies for the southern hemisphere fish PAV.

  • Quantitative analysis of species specificity of two anti-parvalbumin antibodies for detecting southern hemisphere fish species demonstrating strong phylogenetic association
    'Elsevier BV', 2017
    Co-Authors: Ji Liang, Tan, Chui Choo, Taylor, Steve L., Baumert, Joseph L., Lopata, Andreas L., Lee N. Alice
    Abstract:

    This study aimed to develop a novel approach to determine the correlation between the parvalbumin (PAV) contents and their corresponding immunoreactivity (detectability) in southern hemisphere fish species. The immuno-detected PAV contents of the test fish species were estimated by a quantitative SDS-PAGE. A quantitative Enzyme-Linked ImmunoSorbent Assay (ELISA) was formatted to assess relative immunoreactivity of PAV. Sixteen species (forty-three percent) displayed a positive correlation with the anti-cod PAV polyclonal antibody, but no correlation with the anti-carp PAV monoclonal antibody. There was a strong phylogenetic association of the PAV immunoreactivity. Species from the order of Perciformes showed strong binding with both antibodies; whereas species from Salmoniformes, Ophidiiformes, Scombriformes, Scorpaeniformes, and Tetraodontiformes showed weak or no binding. This approach showed for the first time a statistical correlation between the PAV content and the immunoreactivity and allowed to rank the relative species/order specificity of the two antibodies for the southern hemisphere fish PAV. (C) 2017 Elsevier Ltd. All rights reserved

Francisco J Ayala - One of the best experts on this subject based on the ideXlab platform.

  • complete mitochondrial genome of the white char salvelinus albus Salmoniformes salmonidae
    Mitochondrial DNA, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, Mikhail Yu Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of white char Salvelinus albus. The genome sequences are 16 653 bp in size, and the gene arrangement, composition, and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. albus and the GenBank complete mitochondrial genomes of the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence of the species and/or historical hybridization and interspecific replacement of mtDNA.

  • complete mitochondrial genome of the stone char salvelinus kuznetzovi Salmoniformes salmonidae
    Mitochondrial DNA Part B, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, Yu M Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of stone char Salvelinus kuznetzovi. The genome sequences are 16,654 bp in size, and the gene arrangement, composition and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. kuznetzovi and the GenBank complete mitochondrial genomes of the white char S. albus (KT266870 and KT266871), the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of the stone char Salvelinus kuznetzovi (Salmoniformes, Salmonidae)*
    Mitochondrial DNA. Part B Resources, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, M. Yu. Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of stone char Salvelinus kuznetzovi. The genome sequences are 16,654 bp in size, and the gene arrangement, composition and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. kuznetzovi and the GenBank complete mitochondrial genomes of the white char S. albus (KT266870 and KT266871), the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of the Kamchatka grayling Thymallus mertensii (Salmoniformes, Salmonidae).
    Mitochondrial DNA. Part A DNA mapping sequencing and analysis, 2015
    Co-Authors: Evgeniy S Balakirev, Nikolai S. Romanov, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of the Kamchatka grayling Thymallus mertensii. The genome sequences are 16 662 bp in size, and the gene arrangement, composition, and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence (0.92%) detected between the genome of T. mertensii and the GenBank complete mitochondrial genomes of the Arctic grayling T. arcticus (FJ872559) may likely be due to recent divergence of the species and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of blunt-snouted lenok Brachymystax tumensis (Salmoniformes, Salmonidae)
    Mitochondrial DNA. Part A DNA mapping sequencing and analysis, 2014
    Co-Authors: Evgeniy S Balakirev, Nikolai S. Romanov, Francisco J Ayala
    Abstract:

    The complete mitochondrial genomes were sequenced in two individuals of blunt-snouted lenok Brachymystax tumensis. The sizes of the genomes in the two isolates were 16,754 and 16,836; the difference was due to variable number of repeat sequences within the control region. The gene arrangement, base composition, and size of the two sequenced genomes are very similar to the B. lenok and B. lenok tsinlingensis genomes previously published (JQ686730 and JQ686731). However, the level of divergence inferred from 12 protein-coding genes (3.48%) indicated clear species boundaries between the lenok species.

Mikael Elfman - One of the best experts on this subject based on the ideXlab platform.

  • Patterns and magnitude of Zn:Ca in otoliths support the recent phylogenetic typology of Salmoniformes and their sister groups
    Canadian Journal of Fisheries and Aquatic Sciences, 2010
    Co-Authors: Karin E. Limburgk.e. Limburg, Mikael Elfman
    Abstract:

    La chimie des otolithes de poissons sert a associer les poissons a des environnements specifiques. La chimie des otolithes peut aussi potentiellement servir d'outil dans la recherche phylogenetique, comme nous le demontrons ici chez les poissons salmonides et les taxons apparentes. Des cartes bidimensionnelles de la chimie de Zn:Ca dans les otolithes montrent des oscillations annuelles d'amplitude chez des membres des Salmoniformes (les saumons se distinguant des coregones). Celles-ci se decelent aussi chez les esocides, mais pas de facon marquee chez les osmerides, ni chez les autres taxons moins apparentes. De plus, les amplitudes de Zn:Ca sont maximales chez les salmonides et diminuent chez les autres taxons : salmonides (saumons, ombres et coregones) > esocides > osmerides > autres. Une analyse spatiale sur des cartes en coupe sagittale de Zn:Ca les divise en cinq zones et fournit les moyennes de chaque zone ainsi que les moyennes totales. Une analyse des fonctions discriminantes des differentes zones d'otolithes separe encore mieux les groupes taxonomiques, mais montre que les brochets s'associent de plus pres aux salmonides et les osmerides au groupe externe. L'incorporation de Zn:Ca dans les otolithes peut etre un trait sous controle phylogenetique et la chimie de Zn:Ca des otolithes peut venir appuyer la reorganisation recente de la systematique des Salmoniformes et de leurs groupes-soeurs. (Less)

Evgeniy S Balakirev - One of the best experts on this subject based on the ideXlab platform.

  • complete mitochondrial genome of the white char salvelinus albus Salmoniformes salmonidae
    Mitochondrial DNA, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, Mikhail Yu Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of white char Salvelinus albus. The genome sequences are 16 653 bp in size, and the gene arrangement, composition, and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. albus and the GenBank complete mitochondrial genomes of the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence of the species and/or historical hybridization and interspecific replacement of mtDNA.

  • complete mitochondrial genome of the stone char salvelinus kuznetzovi Salmoniformes salmonidae
    Mitochondrial DNA Part B, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, Yu M Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of stone char Salvelinus kuznetzovi. The genome sequences are 16,654 bp in size, and the gene arrangement, composition and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. kuznetzovi and the GenBank complete mitochondrial genomes of the white char S. albus (KT266870 and KT266871), the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of the stone char Salvelinus kuznetzovi (Salmoniformes, Salmonidae)*
    Mitochondrial DNA. Part B Resources, 2016
    Co-Authors: Evgeniy S Balakirev, Valery A Parensky, M. Yu. Kovalev, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of stone char Salvelinus kuznetzovi. The genome sequences are 16,654 bp in size, and the gene arrangement, composition and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence detected between the genome of S. kuznetzovi and the GenBank complete mitochondrial genomes of the white char S. albus (KT266870 and KT266871), the Northern Dolly Varden char S. malma (KJ746618) and the Arctic char S. alpinus (AF154851) may likely be due to recent divergence and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of the Kamchatka grayling Thymallus mertensii (Salmoniformes, Salmonidae).
    Mitochondrial DNA. Part A DNA mapping sequencing and analysis, 2015
    Co-Authors: Evgeniy S Balakirev, Nikolai S. Romanov, Francisco J Ayala
    Abstract:

    The complete mitochondrial genome was sequenced in two individuals of the Kamchatka grayling Thymallus mertensii. The genome sequences are 16 662 bp in size, and the gene arrangement, composition, and size are very similar to the salmonid fish genomes published previously. The low level of sequence divergence (0.92%) detected between the genome of T. mertensii and the GenBank complete mitochondrial genomes of the Arctic grayling T. arcticus (FJ872559) may likely be due to recent divergence of the species and/or historical hybridization and interspecific replacement of mtDNA.

  • Complete mitochondrial genome of blunt-snouted lenok Brachymystax tumensis (Salmoniformes, Salmonidae)
    Mitochondrial DNA. Part A DNA mapping sequencing and analysis, 2014
    Co-Authors: Evgeniy S Balakirev, Nikolai S. Romanov, Francisco J Ayala
    Abstract:

    The complete mitochondrial genomes were sequenced in two individuals of blunt-snouted lenok Brachymystax tumensis. The sizes of the genomes in the two isolates were 16,754 and 16,836; the difference was due to variable number of repeat sequences within the control region. The gene arrangement, base composition, and size of the two sequenced genomes are very similar to the B. lenok and B. lenok tsinlingensis genomes previously published (JQ686730 and JQ686731). However, the level of divergence inferred from 12 protein-coding genes (3.48%) indicated clear species boundaries between the lenok species.

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