The Experts below are selected from a list of 360 Experts worldwide ranked by ideXlab platform
Zhiyong Ruan - One of the best experts on this subject based on the ideXlab platform.
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biodetoxification of phenolic inhibitors from lignocellulose pretreatment using Kurthia huakuii lam0618t and subsequent lactic acid fermentation
2018Co-Authors: Yuejiao Xie, Shumiao Zhao, Zhiyong Ruan, Guodong Feng, Xu Jiang, Yunxiang Liang, Nan PengAbstract:Phenolic inhibitors generated during alkaline pretreatment of lignocellulosic biomasses significantly hinder bacterial growth and subsequent biofuel and biochemical production. Water rinsing is an efficient method for removing these compounds. Nevertheless, this method often generates a great amount of wastewater, and leads to the loss of solid fiber particles and fermentable sugars. Kurthia huakuii LAM0618T, a recently identified microorganism, was herein shown to be able to efficiently transform phenolic compounds (syringaldehyde, hydroxybenzaldehyde, and vanillin) into less toxic acids. Taking advantage of these properties, a biodetoxification method was established by inoculating K. huakuii LAM0618T into the NH₃/H₂O₂-pretreated unwashed corn stover to degrade phenolic inhibitors and weak acids generated during the pretreatment. Subsequently, 33.47 and 17.91 g/L lactic acid was produced by Bacillus coagulans LA204 at 50 °C through simultaneous saccharification and fermentation (SSF) from 8% (w/w) of NH₃/H₂O₂-pretreated corn stover with or without K. huakuii LAM0618T-biodetoxification, indicating biodetoxification significantly increased lactic acid titer and yield. Importantly, using 15% (w/w) of the NH₃/H₂O₂-pretreated K. huakuii LAM0618T-biodetoxified corn stover as a substrate through fed-batch simultaneous saccharification and fermentation, high titer and high yield of lactic acid (84.49 g/L and 0.56 g/g corn stover, respectively, with a productivity of 0.88 g/L/h) were produced by Bacillus coagulans LA204. Therefore, this study reported the first study on biodetoxification of alkaline-pretreated lignocellulosic material, and this biodetoxification method could replace water rinsing for removal of phenolic inhibitors and applied in biofuel and biochemical production using the alkaline-pretreated lignocellulosic bioresources.
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characterization of aiik an ahl lactonase from Kurthia huakui lam0618t and its application in quorum quenching on pseudomonas aeruginosa pao1
2018Co-Authors: Weiwei Dong, Jie Zhu, Xiang Guo, Delong Kong, Qi Zhang, Yiqing Zhou, Xiaoyang Liu, Shumiao Zhao, Zhiyong RuanAbstract:N-Acyl homoserine lactones (AHLs) act as the key quorum sensing (QS) signal molecules in gram-negative bacteria, which coordinates gene expression and then activates various processes, including biofilm formation and production of virulence factors in some pathogens. Quorum quenching (QQ), which is the inactivation of the signal molecules by means of enzymatic degradation or modification, inhibits the processes of QS rather than killing the pathogens and is a promising antipathogenic strategy to control the bacterial pathogens. In this study, an AHL lactonase gene (named aiiK) was cloned from Kurthia huakuii LAM0618T and the AHL lactonase AiiK was expressed by Escherichia coli. AiiK exhibits a variable substrate spectrum and efficient degradation of the AHL compounds. The enzyme assays demonstrated that AiiK behaves as an AHL lactonase that can hydrolyze the lactone bond of the AHLs. The total hydrolytic efficiency of AiiK for C10-HSL is 3.9 s−1·mM−1. AiiK can also maintain 20% activity after 12 h incubation at 37 °C and demonstrate great resistance to α-chymotrypsin, trypsin, and protease K. Furthermore, AiiK significantly inhibits the biofilm formation and attenuates extracellular proteolytic activity and pyocyanin production of Pseudomonas aeruginosa PAO1, which indicates the potential application of AiiK as a biocontrol agent or an anti-pathogenic drug.
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Biodetoxification of Phenolic Inhibitors from Lignocellulose Pretreatment using Kurthia huakuii LAM0618T and Subsequent Lactic Acid Fermentation
2018Co-Authors: Yuejiao Xie, Shumiao Zhao, Guodong Feng, Xu Jiang, Yunxiang Liang, Zhiyong RuanAbstract:Phenolic inhibitors generated during alkaline pretreatment of lignocellulosic biomasses significantly hinder bacterial growth and subsequent biofuel and biochemical production. Water rinsing is an efficient method for removing these compounds. Nevertheless, this method often generates a great amount of wastewater, and leads to the loss of solid fiber particles and fermentable sugars. Kurthia huakuii LAM0618T, a recently identified microorganism, was herein shown to be able to efficiently transform phenolic compounds (syringaldehyde, hydroxybenzaldehyde, and vanillin) into less toxic acids. Taking advantage of these properties, a biodetoxification method was established by inoculating K. huakuii LAM0618T into the NH3/H2O2-pretreated unwashed corn stover to degrade phenolic inhibitors and weak acids generated during the pretreatment. Subsequently, 33.47 and 17.91 g/L lactic acid was produced by Bacillus coagulans LA204 at 50 °C through simultaneous saccharification and fermentation (SSF) from 8% (w/w) of NH3/H2O2-pretreated corn stover with or without K. huakuii LAM0618T-biodetoxification, indicating biodetoxification significantly increased lactic acid titer and yield. Importantly, using 15% (w/w) of the NH3/H2O2-pretreated K. huakuii LAM0618T-biodetoxified corn stover as a substrate through fed-batch simultaneous saccharification and fermentation, high titer and high yield of lactic acid (84.49 g/L and 0.56 g/g corn stover, respectively, with a productivity of 0.88 g/L/h) were produced by Bacillus coagulans LA204. Therefore, this study reported the first study on biodetoxification of alkaline-pretreated lignocellulosic material, and this biodetoxification method could replace water rinsing for removal of phenolic inhibitors and applied in biofuel and biochemical production using the alkaline-pretreated lignocellulosic bioresources
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multilocus sequence analysis of the genus Kurthia and a description of Kurthia populi sp nov
2015Co-Authors: Wei Fang, Zhiyong Ruan, Minwei Guo, Han Xue, Laifa Wang, Guozhong Tian, Chungen PiaoAbstract:Four novel bacterial strains belonging to the genus Kurthia were isolated from the surface of a weevil of the family Curculionidae (strain 10y-14T), and from bark samples of hybrid poplar, Populus × euramericana (strains 6-3, 2-5 and 06C10-3-14), in Puyang, Henan Province, China. Phylogenetic analyses of the 16S rRNA gene and multilocus sequence analysis (MLSA) data showed that the four strains form a distinct cluster in the genus Kurthia, indicating that they all belong to a single taxon within the genus. DNA–DNA hybridization levels between strain 10y-4T and Kurthia huakuii LAM0618T and Kurthia massiliensis DSM 24639T were 58.31 and 53.92 %, respectively. This indicates that the four novel strains represent a species distinct from these two closely related species. The DNA G+C content of the novel strains was 42.1–42.6 %. The major fatty acids were iso-C15 : 0 and anteiso-C15 : 0.The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unknown phospholipid and unidentified aminophospholipids. The predominant menaquinones were MK-7 (90 %) and MK-6 (10 %). The major cell-wall amino acids were lysine, alanine, glutamic acid and glycine. On the basis of the MLSA and 16S rRNA gene sequence phylogenetic analyses, DNA–DNA reassociation values, DNA base composition, and biochemical and phenotypic characteristics, the four strains are considered to represent a novel species within the genus Kurthia, for which the name Kurthia populi sp. nov. is proposed. The type strain is 10y-14T ( = CFCC 11600T = KCTC 33522T).
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draft genome sequence of Kurthia huakuii lam0618t an organic pollutant degrading strain isolated from biogas slurry
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Yi Zhai, Chao Chen, Chi Zhang, Bingqiang Zhao, Bin ZhaoAbstract:ABSTRACT Kurthia huakuii LAM0618T is a facultative anaerobic pollutant-degrading bacterium isolated from biogas slurry. An analysis of the draft genome sequence of LAM0618T reveals a genome size of 3,585,165 bp, with a mean G+C content of 39.1%. The genome contains 3,560 coding sequences and 112 tRNA and 33 rRNA genes.
Bin Zhao - One of the best experts on this subject based on the ideXlab platform.
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draft genome sequence of Kurthia huakuii lam0618t an organic pollutant degrading strain isolated from biogas slurry
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Yi Zhai, Chao Chen, Chi Zhang, Bingqiang Zhao, Bin ZhaoAbstract:ABSTRACT Kurthia huakuii LAM0618T is a facultative anaerobic pollutant-degrading bacterium isolated from biogas slurry. An analysis of the draft genome sequence of LAM0618T reveals a genome size of 3,585,165 bp, with a mean G+C content of 39.1%. The genome contains 3,560 coding sequences and 112 tRNA and 33 rRNA genes.
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Kurthia huakuii sp nov isolated from biogas slurry and emended description of the genus Kurthia
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Shenghua Jiang, Huimin Wang, Binqiang Zhao, Ruibo Jiang, Bin ZhaoAbstract:A novel facultatively anaerobic bacterium, designated strain LAM0618T, was isolated from biogas slurry samples collected from the large-scale anaerobic digester of Modern Farming Corporation in Hebei Province, China. Cells of strain LAM0618T were Gram-stain-positive, motile, non-spore-forming and short-rod-shaped. The optimal temperature and pH for growth were 30 °C and 7.0, respectively. The strain did not require NaCl for growth but tolerated up to 70 g NaCl l−1. The major fatty acids of strain LAM0618T were iso-C15 : 0, anteiso-C15 : 0, iso-C14 : 0, C16 : 0 and C18 : 0. The predominant menaquinones of strain LAM0618T were menaquinone 7 (MK-7) and menaquinone 6 (MK-6). The main polar lipids of strain LAM0618T were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and six unknown glycolipids. The genomic DNA G+C content was 41 mol% as determined by the T m method. Analysis of the 16S rRNA gene sequence revealed that strain LAM0618T was a member of the genus Kurthia , and was most closely related to ‘ Kurthia massiliensis’ DSM 24639, Kurthia zopfii DSM 20580T, Kurthia gibsonii DSM 20636T and Kurthia sibirica DSM 4747T, with 96.9, 95.7, 95.6 and 94.9 % sequence similarity, respectively. Based on its phenotypic and genotypic properties, strain LAM0618T is suggested to represent a novel species of the genus Kurthia , for which the name Kurthia huakuii sp. nov. is proposed. The type strain is LAM0618T ( = ACCC 06121T = JCM 19187T).
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isolation and characterization of a novel cinosulfuron degrading Kurthia sp from a methanogenic microbial consortium
2013Co-Authors: Zhiyong Ruan, Yanwei Wang, Shenghua Jiang, Shan Zhou, Lei Sun, Yi Zhai, Chao Chen, Bin ZhaoAbstract:A novel bacterial strain LAM0713 was isolated from a methanogenic bacterial complexes and identified as Kurthia sp. based on morphological, cultural, physio-biochemical characteristics and analysis of 16S rDNA sequence. Strain LAM0713 was found to be capable of utilizing cinosulfuron as sole nitrogen source for growth over a wide range of temperature (20-40 °C) and pH (5.0-9.0). Response surface methodology was used to optimize the degradation conditions. Strain LAM0713 could efficiently degrade 92.4% of initially supplemented 50 mg·L(1) cinosulfuron under the optimum conditions (pH 6.9, 31.8 °C) within 5 days. Five intermediates formed during cinosulfuron degradation were detected by liquid chromatography mass spectrometry (LC-MS), and a metabolic pathway for cinosulfuron degradation was proposed via cleavage of the sulfonylurea bridge. It is the first report showing that Kurthia sp. strain could degrade sulfonylurea herbicides, suggesting that strain LAM0713 may provide new insight into microbial degradation of herbicides.
Yanwei Wang - One of the best experts on this subject based on the ideXlab platform.
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Characterization of a Highly Thermostable and Organic Solvent-Tolerant Copper-Containing Polyphenol Oxidase with Dye-Decolorizing Ability from Kurthia huakuii LAM0618T
2016Co-Authors: Xiang Guo, Jie Zhu, Delong Kong, Yanwei Wang, Jinlong Song, Huimin Wang, Shan Zhou, Weiwei DongAbstract:Laccases are green biocatalysts that possess attractive advantages for the treatment of resistant environmental pollutants and dye effluents. A putative laccase-like gene, laclK, encoding a protein of 29.3 kDa and belonging to the Cu-oxidase_4 superfamily, was cloned and overexpressed in Escherichia coli. The purified recombinant protein LaclK (LaclK) was able to oxidize typical laccase substrates such as 2,6-dimethoxyphenol and l-dopamine. The characteristic adsorption maximums of typical laccases at 330 nm and 610 nm were not detected for LaclK. Cu2+ was essential for substrate oxidation, but the ratio of copper atoms/molecule of LaclK was determined to only be 1:1. Notably, the optimal temperature of LaclK was 85°C with 2,6-dimethoxyphenol as substrates, and the half-life approximately 3 days at 80°C. Furthermore, 10% (v/v) organic solvents (methanol, ethanol, isopropyl alcohol, butyl alcohol, Triton x-100 or dimethyl sulfoxide) could promote enzymatic activity. LaclK exhibited wide-spectrum decolorization ability towards triphenylmethane dyes, azo dyes and aromatic dyes, decolorizing 92% and 94% of Victoria Blue B (25 μM) and Ethyl Violet (25 μM), respectively, at a concentration of 60 U/L after 1 h of incubation at 60°C. Overall, we characterized a novel thermostable and organic solvent-tolerant copper-containing polyphenol oxidase possessing dye-decolorizing ability. These unusual properties make LaclK an alternative for industrial applications, particularly processes that require high-temperature conditions.
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draft genome sequence of Kurthia huakuii lam0618t an organic pollutant degrading strain isolated from biogas slurry
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Yi Zhai, Chao Chen, Chi Zhang, Bingqiang Zhao, Bin ZhaoAbstract:ABSTRACT Kurthia huakuii LAM0618T is a facultative anaerobic pollutant-degrading bacterium isolated from biogas slurry. An analysis of the draft genome sequence of LAM0618T reveals a genome size of 3,585,165 bp, with a mean G+C content of 39.1%. The genome contains 3,560 coding sequences and 112 tRNA and 33 rRNA genes.
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Kurthia huakuii sp nov isolated from biogas slurry and emended description of the genus Kurthia
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Shenghua Jiang, Huimin Wang, Binqiang Zhao, Ruibo Jiang, Bin ZhaoAbstract:A novel facultatively anaerobic bacterium, designated strain LAM0618T, was isolated from biogas slurry samples collected from the large-scale anaerobic digester of Modern Farming Corporation in Hebei Province, China. Cells of strain LAM0618T were Gram-stain-positive, motile, non-spore-forming and short-rod-shaped. The optimal temperature and pH for growth were 30 °C and 7.0, respectively. The strain did not require NaCl for growth but tolerated up to 70 g NaCl l−1. The major fatty acids of strain LAM0618T were iso-C15 : 0, anteiso-C15 : 0, iso-C14 : 0, C16 : 0 and C18 : 0. The predominant menaquinones of strain LAM0618T were menaquinone 7 (MK-7) and menaquinone 6 (MK-6). The main polar lipids of strain LAM0618T were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and six unknown glycolipids. The genomic DNA G+C content was 41 mol% as determined by the T m method. Analysis of the 16S rRNA gene sequence revealed that strain LAM0618T was a member of the genus Kurthia , and was most closely related to ‘ Kurthia massiliensis’ DSM 24639, Kurthia zopfii DSM 20580T, Kurthia gibsonii DSM 20636T and Kurthia sibirica DSM 4747T, with 96.9, 95.7, 95.6 and 94.9 % sequence similarity, respectively. Based on its phenotypic and genotypic properties, strain LAM0618T is suggested to represent a novel species of the genus Kurthia , for which the name Kurthia huakuii sp. nov. is proposed. The type strain is LAM0618T ( = ACCC 06121T = JCM 19187T).
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isolation and characterization of a novel cinosulfuron degrading Kurthia sp from a methanogenic microbial consortium
2013Co-Authors: Zhiyong Ruan, Yanwei Wang, Shenghua Jiang, Shan Zhou, Lei Sun, Yi Zhai, Chao Chen, Bin ZhaoAbstract:A novel bacterial strain LAM0713 was isolated from a methanogenic bacterial complexes and identified as Kurthia sp. based on morphological, cultural, physio-biochemical characteristics and analysis of 16S rDNA sequence. Strain LAM0713 was found to be capable of utilizing cinosulfuron as sole nitrogen source for growth over a wide range of temperature (20-40 °C) and pH (5.0-9.0). Response surface methodology was used to optimize the degradation conditions. Strain LAM0713 could efficiently degrade 92.4% of initially supplemented 50 mg·L(1) cinosulfuron under the optimum conditions (pH 6.9, 31.8 °C) within 5 days. Five intermediates formed during cinosulfuron degradation were detected by liquid chromatography mass spectrometry (LC-MS), and a metabolic pathway for cinosulfuron degradation was proposed via cleavage of the sulfonylurea bridge. It is the first report showing that Kurthia sp. strain could degrade sulfonylurea herbicides, suggesting that strain LAM0713 may provide new insight into microbial degradation of herbicides.
Catherine Robert - One of the best experts on this subject based on the ideXlab platform.
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Standards in Genomic Sciences (2014) 9:1319-1230 DOI: 10.4056/sigs.5078947 The Genomic Standards Consortium
2015Co-Authors: Veronique Roux, Jean Christophe Lagier, Aurore Gorlas, Catherine RobertAbstract:Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov
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non contiguous finished genome sequence and description of Kurthia massiliensis sp nov
2012Co-Authors: Veronique Roux, Khalid El Karkouri, Jean Christophe Lagier, Catherine RobertAbstract:Kurthia massiliensis strain JC30T sp. nov. is the type strain of K. massiliensis sp. nov., a new species within the genus Kurthia. This strain, whose genome is described here, was isolated from the fecal flora of a healthy patient. K. massiliensis is a Gram-positive aerobic rod. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 3,199,090 bp long genome contains 3,240 protein-coding genes and 86 RNA genes, including between 3 and 4 rRNA genes.
Jinlong Song - One of the best experts on this subject based on the ideXlab platform.
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Characterization of a Highly Thermostable and Organic Solvent-Tolerant Copper-Containing Polyphenol Oxidase with Dye-Decolorizing Ability from Kurthia huakuii LAM0618T
2016Co-Authors: Xiang Guo, Jie Zhu, Delong Kong, Yanwei Wang, Jinlong Song, Huimin Wang, Shan Zhou, Weiwei DongAbstract:Laccases are green biocatalysts that possess attractive advantages for the treatment of resistant environmental pollutants and dye effluents. A putative laccase-like gene, laclK, encoding a protein of 29.3 kDa and belonging to the Cu-oxidase_4 superfamily, was cloned and overexpressed in Escherichia coli. The purified recombinant protein LaclK (LaclK) was able to oxidize typical laccase substrates such as 2,6-dimethoxyphenol and l-dopamine. The characteristic adsorption maximums of typical laccases at 330 nm and 610 nm were not detected for LaclK. Cu2+ was essential for substrate oxidation, but the ratio of copper atoms/molecule of LaclK was determined to only be 1:1. Notably, the optimal temperature of LaclK was 85°C with 2,6-dimethoxyphenol as substrates, and the half-life approximately 3 days at 80°C. Furthermore, 10% (v/v) organic solvents (methanol, ethanol, isopropyl alcohol, butyl alcohol, Triton x-100 or dimethyl sulfoxide) could promote enzymatic activity. LaclK exhibited wide-spectrum decolorization ability towards triphenylmethane dyes, azo dyes and aromatic dyes, decolorizing 92% and 94% of Victoria Blue B (25 μM) and Ethyl Violet (25 μM), respectively, at a concentration of 60 U/L after 1 h of incubation at 60°C. Overall, we characterized a novel thermostable and organic solvent-tolerant copper-containing polyphenol oxidase possessing dye-decolorizing ability. These unusual properties make LaclK an alternative for industrial applications, particularly processes that require high-temperature conditions.
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draft genome sequence of Kurthia huakuii lam0618t an organic pollutant degrading strain isolated from biogas slurry
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Yi Zhai, Chao Chen, Chi Zhang, Bingqiang Zhao, Bin ZhaoAbstract:ABSTRACT Kurthia huakuii LAM0618T is a facultative anaerobic pollutant-degrading bacterium isolated from biogas slurry. An analysis of the draft genome sequence of LAM0618T reveals a genome size of 3,585,165 bp, with a mean G+C content of 39.1%. The genome contains 3,560 coding sequences and 112 tRNA and 33 rRNA genes.
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Kurthia huakuii sp nov isolated from biogas slurry and emended description of the genus Kurthia
2014Co-Authors: Zhiyong Ruan, Yanwei Wang, Jinlong Song, Shenghua Jiang, Huimin Wang, Binqiang Zhao, Ruibo Jiang, Bin ZhaoAbstract:A novel facultatively anaerobic bacterium, designated strain LAM0618T, was isolated from biogas slurry samples collected from the large-scale anaerobic digester of Modern Farming Corporation in Hebei Province, China. Cells of strain LAM0618T were Gram-stain-positive, motile, non-spore-forming and short-rod-shaped. The optimal temperature and pH for growth were 30 °C and 7.0, respectively. The strain did not require NaCl for growth but tolerated up to 70 g NaCl l−1. The major fatty acids of strain LAM0618T were iso-C15 : 0, anteiso-C15 : 0, iso-C14 : 0, C16 : 0 and C18 : 0. The predominant menaquinones of strain LAM0618T were menaquinone 7 (MK-7) and menaquinone 6 (MK-6). The main polar lipids of strain LAM0618T were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and six unknown glycolipids. The genomic DNA G+C content was 41 mol% as determined by the T m method. Analysis of the 16S rRNA gene sequence revealed that strain LAM0618T was a member of the genus Kurthia , and was most closely related to ‘ Kurthia massiliensis’ DSM 24639, Kurthia zopfii DSM 20580T, Kurthia gibsonii DSM 20636T and Kurthia sibirica DSM 4747T, with 96.9, 95.7, 95.6 and 94.9 % sequence similarity, respectively. Based on its phenotypic and genotypic properties, strain LAM0618T is suggested to represent a novel species of the genus Kurthia , for which the name Kurthia huakuii sp. nov. is proposed. The type strain is LAM0618T ( = ACCC 06121T = JCM 19187T).
