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Alan Tunnacliffe - One of the best experts on this subject based on the ideXlab platform.
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spliced leader rna mediated trans splicing in phylum Rotifera
Molecular Biology and Evolution, 2005Co-Authors: Natalia N Pouchkinastantcheva, Alan TunnacliffeAbstract:In kinetoplastids, Euglena, and four metazoan phyla, trans-splicing has been described as a mechanism for the generation of mature messenger RNAs (mRNAs): 5'-ends of precursor mRNAs are replaced by a short spliced leader (SL) exon from a small SL RNA. Although the full phylogenetic range is unknown, trans-splicing has not been found in vertebrates, insects, plants, or yeast. In animal groups where it does occur, i.e., nematodes, cnidarians, platyhelminths, and primitive chordates, SL RNAs do not show sequence relatedness across phyla. The apparently sporadic phylogenetic distribution and the lack of SL RNA homology have led to opposing hypotheses on its evolution, involving either an ancient origin followed by loss in multiple lineages or independent acquisition in several taxa. Here we present evidence for the occurrence of trans-splicing in bdelloid rotifers (Bdelloidea, Rotifera). A common 23-nt sequence, representing the SL exon-diagnostic of SL RNA-mediated trans-splicing-was found at the 5'-end of at least 50%-65% of mRNAs from Adineta ricciae and Philodina sp. The trans-splicing pattern in bdelloid rotifers can be unusually complex, as observed in transcripts from a heat shock protein gene, hsp82-1, where the SL exon was spliced to three alternative positions. Bdelloid rotifer SL RNAs were found to be 105 or 106 nt long and comprised the SL sequence, a conserved splice donor site and an intron containing a putative spliceosome-binding motif. Intriguingly, some similarity of rotifer SL RNA sequence and predicted secondary structure was seen to that of the predominant SL1 RNA of nematodes, although it is unlikely that this demonstrates homology. In addition, sequence corresponding to the rotifer SL exon was found at the 5'-end of a number of full-length complementary DNA (cDNA) clones in a rice (Oryza sativa) database. None of these cDNAs gave a close match with homologous plant genes, suggesting that a small but significant portion of the rice expressed sequence tag database represents sequences derived from rotifers. In summary, the description of SL-mediated trans-splicing in Rotifera extends its representation to at least five metazoan phyla, making it increasingly probable that this is a phylogenetically widespread and therefore ancient phenomenon.
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Spliced Leader RNA–Mediated trans-Splicing in Phylum Rotifera
Molecular biology and evolution, 2005Co-Authors: Natalia N. Pouchkina-stantcheva, Alan TunnacliffeAbstract:In kinetoplastids, Euglena, and four metazoan phyla, trans-splicing has been described as a mechanism for the generation of mature messenger RNAs (mRNAs): 5'-ends of precursor mRNAs are replaced by a short spliced leader (SL) exon from a small SL RNA. Although the full phylogenetic range is unknown, trans-splicing has not been found in vertebrates, insects, plants, or yeast. In animal groups where it does occur, i.e., nematodes, cnidarians, platyhelminths, and primitive chordates, SL RNAs do not show sequence relatedness across phyla. The apparently sporadic phylogenetic distribution and the lack of SL RNA homology have led to opposing hypotheses on its evolution, involving either an ancient origin followed by loss in multiple lineages or independent acquisition in several taxa. Here we present evidence for the occurrence of trans-splicing in bdelloid rotifers (Bdelloidea, Rotifera). A common 23-nt sequence, representing the SL exon-diagnostic of SL RNA-mediated trans-splicing-was found at the 5'-end of at least 50%-65% of mRNAs from Adineta ricciae and Philodina sp. The trans-splicing pattern in bdelloid rotifers can be unusually complex, as observed in transcripts from a heat shock protein gene, hsp82-1, where the SL exon was spliced to three alternative positions. Bdelloid rotifer SL RNAs were found to be 105 or 106 nt long and comprised the SL sequence, a conserved splice donor site and an intron containing a putative spliceosome-binding motif. Intriguingly, some similarity of rotifer SL RNA sequence and predicted secondary structure was seen to that of the predominant SL1 RNA of nematodes, although it is unlikely that this demonstrates homology. In addition, sequence corresponding to the rotifer SL exon was found at the 5'-end of a number of full-length complementary DNA (cDNA) clones in a rice (Oryza sativa) database. None of these cDNAs gave a close match with homologous plant genes, suggesting that a small but significant portion of the rice expressed sequence tag database represents sequences derived from rotifers. In summary, the description of SL-mediated trans-splicing in Rotifera extends its representation to at least five metazoan phyla, making it increasingly probable that this is a phylogenetically widespread and therefore ancient phenomenon.
Natalia N Pouchkinastantcheva - One of the best experts on this subject based on the ideXlab platform.
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spliced leader rna mediated trans splicing in phylum Rotifera
Molecular Biology and Evolution, 2005Co-Authors: Natalia N Pouchkinastantcheva, Alan TunnacliffeAbstract:In kinetoplastids, Euglena, and four metazoan phyla, trans-splicing has been described as a mechanism for the generation of mature messenger RNAs (mRNAs): 5'-ends of precursor mRNAs are replaced by a short spliced leader (SL) exon from a small SL RNA. Although the full phylogenetic range is unknown, trans-splicing has not been found in vertebrates, insects, plants, or yeast. In animal groups where it does occur, i.e., nematodes, cnidarians, platyhelminths, and primitive chordates, SL RNAs do not show sequence relatedness across phyla. The apparently sporadic phylogenetic distribution and the lack of SL RNA homology have led to opposing hypotheses on its evolution, involving either an ancient origin followed by loss in multiple lineages or independent acquisition in several taxa. Here we present evidence for the occurrence of trans-splicing in bdelloid rotifers (Bdelloidea, Rotifera). A common 23-nt sequence, representing the SL exon-diagnostic of SL RNA-mediated trans-splicing-was found at the 5'-end of at least 50%-65% of mRNAs from Adineta ricciae and Philodina sp. The trans-splicing pattern in bdelloid rotifers can be unusually complex, as observed in transcripts from a heat shock protein gene, hsp82-1, where the SL exon was spliced to three alternative positions. Bdelloid rotifer SL RNAs were found to be 105 or 106 nt long and comprised the SL sequence, a conserved splice donor site and an intron containing a putative spliceosome-binding motif. Intriguingly, some similarity of rotifer SL RNA sequence and predicted secondary structure was seen to that of the predominant SL1 RNA of nematodes, although it is unlikely that this demonstrates homology. In addition, sequence corresponding to the rotifer SL exon was found at the 5'-end of a number of full-length complementary DNA (cDNA) clones in a rice (Oryza sativa) database. None of these cDNAs gave a close match with homologous plant genes, suggesting that a small but significant portion of the rice expressed sequence tag database represents sequences derived from rotifers. In summary, the description of SL-mediated trans-splicing in Rotifera extends its representation to at least five metazoan phyla, making it increasingly probable that this is a phylogenetically widespread and therefore ancient phenomenon.
Natalia N. Pouchkina-stantcheva - One of the best experts on this subject based on the ideXlab platform.
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Spliced Leader RNA–Mediated trans-Splicing in Phylum Rotifera
Molecular biology and evolution, 2005Co-Authors: Natalia N. Pouchkina-stantcheva, Alan TunnacliffeAbstract:In kinetoplastids, Euglena, and four metazoan phyla, trans-splicing has been described as a mechanism for the generation of mature messenger RNAs (mRNAs): 5'-ends of precursor mRNAs are replaced by a short spliced leader (SL) exon from a small SL RNA. Although the full phylogenetic range is unknown, trans-splicing has not been found in vertebrates, insects, plants, or yeast. In animal groups where it does occur, i.e., nematodes, cnidarians, platyhelminths, and primitive chordates, SL RNAs do not show sequence relatedness across phyla. The apparently sporadic phylogenetic distribution and the lack of SL RNA homology have led to opposing hypotheses on its evolution, involving either an ancient origin followed by loss in multiple lineages or independent acquisition in several taxa. Here we present evidence for the occurrence of trans-splicing in bdelloid rotifers (Bdelloidea, Rotifera). A common 23-nt sequence, representing the SL exon-diagnostic of SL RNA-mediated trans-splicing-was found at the 5'-end of at least 50%-65% of mRNAs from Adineta ricciae and Philodina sp. The trans-splicing pattern in bdelloid rotifers can be unusually complex, as observed in transcripts from a heat shock protein gene, hsp82-1, where the SL exon was spliced to three alternative positions. Bdelloid rotifer SL RNAs were found to be 105 or 106 nt long and comprised the SL sequence, a conserved splice donor site and an intron containing a putative spliceosome-binding motif. Intriguingly, some similarity of rotifer SL RNA sequence and predicted secondary structure was seen to that of the predominant SL1 RNA of nematodes, although it is unlikely that this demonstrates homology. In addition, sequence corresponding to the rotifer SL exon was found at the 5'-end of a number of full-length complementary DNA (cDNA) clones in a rice (Oryza sativa) database. None of these cDNAs gave a close match with homologous plant genes, suggesting that a small but significant portion of the rice expressed sequence tag database represents sequences derived from rotifers. In summary, the description of SL-mediated trans-splicing in Rotifera extends its representation to at least five metazoan phyla, making it increasingly probable that this is a phylogenetically widespread and therefore ancient phenomenon.
Hendrik Segers - One of the best experts on this subject based on the ideXlab platform.
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A checklist of the freshwater rotifer fauna of Thailand (Rotifera, Monogononta, Bdelloidea)
Journal of Limnology, 2013Co-Authors: Phannee Sa-ardrit, Pornsilp Pholpunthin, Hendrik SegersAbstract:We provide a checklist of the freshwater Rotifera recorded from Thailand, based on a review of available literature. Approximately 398 species of rotifers are recorded. The rotifer fauna of Thailand has been investigated quite comprehensively and these studies focus on four main parts of the country: the northern, north-eastern, central and southern. The number of rotifers on record is the highest in the north-eastern part (275), followed by the southern part (261), the central part (182) and the northern part (115). The majority of Thai Rotifera belongs to family Lecanidae (24.4%), Lepadellidae (11.3%), Brachionidae (11.1%), Trichocercidae (9.0%) and Flosculariidae (9.0%). The most diverse genus is Lecane followed by Trichocerca, Lepadella and Brachionus. Although most Thai rotifers are cosmopolitan, there are a number of Oriental endemics, including some strict Thai or regional endemics. Illoricate rotifers and bdelloids are understudied, while experimental and molecular approaches promise to add most to our knowledge and understanding of the role of rotifers in ecosystem functioning.
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global diversity of rotifers Rotifera in freshwater
Hydrobiologia, 2008Co-Authors: Hendrik SegersAbstract:Rotifera is a Phylum of primary freshwater Metazoa containing two major groups: the heterogonic Monogononta and the exclusively parthenogenetic Bdelloidea. Monogononta contains 1,570 species-level taxa, of which a majority (1,488) are free-living fresh or inland water taxa. Bdelloidea contains 461 “species,” only one of which is marine, but with many limnoterrestrial representatives or animals of unknown ecology. Actual numbers may be much higher, considering the occurrence of cryptic speciation in Monogononta and the unsatisfactory nature of taxonomic knowledge. Rotifers, mostly monogononts, occur in all types of water bodies, worldwide. They are particularly diverse in the littoral zone of stagnant waterbodies with soft, slightly acidic water and under oligo- to mesotrophic conditions. The rotifer record is highest in the Northern hemisphere, which may be due to the concentration of studies in those regions. Diversity is highest in the (sub)tropics; hotspots are northeast North America, tropical South America, Southeast Asia, Australia, and Lake Baikal, endemicity is low in Africa (including Madagascar), Europe, the Indian subcontinent, and Antarctica. Although the lack of fossil evidence and of molecular phylogenetic studies are major hindrances, contrasting hypotheses on the origin and evolutionary history of Brachionus, Macrochaetus, and Trichocerca are presented.
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MICROFAUNAL DIVERSITY IN A BIODIVERSITY HOTSPOT: NEW ROTIFERS FROM SOUTHWESTERN AUSTRALIA
Zoological Studies, 2003Co-Authors: Hendrik Segers, Russell J. ShielAbstract:Hendrik Segers and Russell J. Shiel (2003) Microfaunal diversity in a biodiversity hotspot: new rotifers from southwestern Australia. Zoological Studies 42(4): 516-521. We present the descriptions of 3 new and apparently endemic species of rotifer (Rotifera: Monogononta: Lecanidae, Trichocercidae). Lecane halsei sp. nov. belongs to the L. ludwigii (Eckstein)-group, and is diagnosed by the absence of a posterior projection on the lorica. The taxonomy of the L. ludwigii-group is commented upon. Lecane noobijupi sp. nov. is a sister taxon of the common, cosmopolitan L. bulla (Gosse), whereas Trichocerca wanarra sp. nov. is close to T. insignis (Herrick), T. myersi (Hauer), and T. plaka (Myers), but the trophi are characteristic. The 3 new species illustrate the diversity of the freshwater microfauna in southwestern Australia, and the need for a thorough taxonomic approach to biodiversity inventories of cryptic microfaunal groups. http://www.sinica.edu.tw/zool/zoolstud/42.4/516.pdf
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Zoogeography of the Southeast Asian Rotifera
Rotifera IX, 2001Co-Authors: Hendrik SegersAbstract:The distribution and taxonomic composition of Rotifera in Southeast Asia is reviewed. For some countries, records are poor: Brunei, Cambodia and Laos are almost terra incognita for rotifers (< 10 taxa recorded), while the Thai rotifer fauna is the best documented (ca. 310 taxa on record). However, analysis of the available data is impeded by fuzzy taxonomy and the questionable reliability of many records. Most studies focus on the pelagic or littoral of freshwater habitats. Other habitats are largely ignored. Similarly, few studies deal comprehensively with illoricate Monogononta, sessile Flosculariacea and Collothecacea and, especially, Bdelloidea. The genera Lecane, Brachionus and Trichocerca are the best represented, with littoral taxa predominant. Fisheries-related studies dealing with highly productive pelagic environments tend to over report the contribution of Brachionus. Most taxa are thermophilic character, exemplified by the dominance of tropic-centred Lecane and Brachionus. Some cold-water taxa have been recorded, but the relative climatological homogeneity of the region and low number of studies on high-altitude environments prevent the discrimination of clear latitudinal or altitudinal variation in the distribution of rotifers within Southeast Asia. The majority of Southeast Asian rotifers are widely distributed, including true cosmopolites and thermophilic taxa. There are several local or Oriental endemic Rotifera, mostly Lecane. The American Brachionus havanaensis and Keratella americana appear to have been introduced to the region. The taxonomy of some Rotifera described from the region is commented upon; Brachionus murphyi Sudzuki is recognised as senior synonym of B. niwati Sanoamuang et al. (syn. nov.). Some cases of geographical and/or ecological vicariant species-pairs are suggested. The Southeast Asian rotifer fauna contains a sizeable fraction of taxa occurring in the tropical regions of the Old World, most of which also occur in tropical Australia or the Austro-Malayan region. A tropical Australasian faunal component is present, but consists of few taxa only. Hence, affinities between the rotifer fauna of the Ethiopian, Oriental and tropical Australian and Austro-Malayan regions are supported, rather than an affinity between the Indo-Asian or Indo-Malaysian and tropical Australian fauna.
Terry W. Snell - One of the best experts on this subject based on the ideXlab platform.
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Conservation of estrogen receptor function in invertebrate reproduction
BMC Evolutionary Biology, 2017Co-Authors: Brande L. Jones, Chris Walker, Bahareh Azizi, Laren Tolbert, Loren Dean Williams, Terry W. SnellAbstract:Background Rotifers are microscopic aquatic invertebrates that reproduce both sexually and asexually. Though rotifers are phylogenetically distant from humans, and have specialized reproductive physiology, this work identifies a surprising conservation in the control of reproduction between humans and rotifers through the estrogen receptor. Until recently, steroid signaling has been observed in only a few invertebrate taxa and its role in regulating invertebrate reproduction has not been clearly demonstrated. Insights into the evolution of sex signaling pathways can be gained by clarifying how receptors function in invertebrate reproduction. Results In this paper, we show that a ligand-activated estrogen-like receptor in rotifers binds human estradiol and regulates reproductive output in females. In other invertebrates characterized thus far, ER ligand binding domains have occluded ligand-binding sites and the ERs are not ligand activated. We have used a suite of computational, biochemical and biological techniques to determine that the rotifer ER binding site is not occluded and can bind human estradiol. Conclusions Our results demonstrate that this mammalian hormone receptor plays a key role in reproduction of the ancient microinvertebrate Brachinous manjavacas . The presence and activity of the ER within the phylum Rotifera indicates that the ER structure and function is highly conserved throughout animal evolution.
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use of copper to selectively inhibit brachionus calyciflorus predator growth in chlorella kessleri prey mass cultures for algae biodiesel production
International Journal of Molecular Sciences, 2015Co-Authors: Vishnupriya Pradeep, Sichoon Park, Christine Yi, Rachel K. Johnston, Thomas Igou, Steven W Van Ginkel, Terry W. Snell, Hao Fu, Yongsheng ChenAbstract:A single Brachionus rotifer can consume thousands of algae cells per hour causing an algae pond to crash within days of infection. Thus, there is a great need to reduce rotifers in order for algal biofuel production to become reality. Copper can selectively inhibit rotifers in algae ponds, thereby protecting the algae crop. Differential toxicity tests were conducted to compare the copper sensitivity of a model rotifer—B. calyciflorus and an alga, C. kessleri. The rotifer LC50 was <0.1 ppm while the alga was not affected up to 5 ppm Cu(II). The low pH of the rotifer stomach may make it more sensitive to copper. However, when these cultures were combined, a copper concentration of 1.5 ppm was needed to inhibit the rotifer as the alga bound the copper, decreasing its bioavailability. Copper (X ppm) had no effect on downstream fatty acid methyl ester extraction.
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Use of Copper to Selectively Inhibit Brachionus calyciflorus (Predator) Growth in Chlorella kessleri (Prey) Mass Cultures for Algae Biodiesel Production.
International journal of molecular sciences, 2015Co-Authors: Vishnupriya Pradeep, Sichoon Park, Rachel K. Johnston, Thomas Igou, Terry W. Snell, Steven W. Van Ginkel, Yongsheng ChenAbstract:A single Brachionus rotifer can consume thousands of algae cells per hour causing an algae pond to crash within days of infection. Thus, there is a great need to reduce rotifers in order for algal biofuel production to become reality. Copper can selectively inhibit rotifers in algae ponds, thereby protecting the algae crop. Differential toxicity tests were conducted to compare the copper sensitivity of a model rotifer-B. calyciflorus and an alga, C. kessleri. The rotifer LC50 was
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Antioxidants can extend lifespan of Brachionus manjavacas (Rotifera), but only in a few combinations
Biogerontology, 2012Co-Authors: Terry W. Snell, Allison M. Fields, Rachel K. JohnstonAbstract:Animal cells are protected from oxidative damage by an antioxidant network operating as a coordinated system, with strong synergistic interactions. Lifespan studies with whole animals are expensive and laborious, so there has been little investigation of which antioxidant interactions might be useful for life extension. Animals in the phylum Rotifera are particularly promising models for aging studies because they are small (0.1–1 mm), have short, two-week lifespan, display typical patterns of animal aging, and have well characterized, easy to measure phenotypes of aging and senescence. One class of interventions that has consistently produced significant rotifer life extension is antioxidants. Although the mechanism of antioxidant effects on animal aging remains controversial, the ability of some antioxidant supplements to extend rotifer lifespan was unequivocal. We found that exposing rotifers to certain combinations of antioxidant supplements can produce up to about 20% longer lifespan, but that most antioxidants have no effect. We performed life table tests with 20 single antioxidants and none yielded significant rotifer life extension. We tested 60 two-way combinations of selected antioxidants and only seven (12%) produced significant rotifer life extension. None of the 20 three- and four-way antioxidant combinations tested yielded significant rotifer life extension. These observations suggest that dietary exposure of antioxidants can extend rotifer lifespan, but most antioxidants do not. We observed significant rotifer life extension only when antioxidants were paired with trolox, N -acetyl cysteine, l -carnosine, or EUK-8. This illustrates that antioxidant treatments capable of rotifer life extension are patchily distributed in the parameter space, so large regions must be searched to find them. It furthermore underscores the value of the rotifer model to conduct rapid, facile life table experiments with many treatments, which makes such a search feasible. Although some antioxidants extended rotifer lifespan, they likely did so by another mechanism than direct antioxidation.
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Use of GABA to enhance rotifer reproduction in enrichment culture
Aquaculture Research, 2001Co-Authors: Wenresti G. Gallardo, Atsushi Hagiwara, Terry W. SnellAbstract:Gamma-aminobutyric acid (GABA) has been shown to enhance the reproduction of the rotifer Brachionus plicatilis Muller in stressful culture conditions. During the enrichment of rotifers for feeding to marine fish larvae, they are usually stressed as a result of exposure to different marine oils and high population densities. This typically results in decreased rotifer survival, reproduction and swimming activity. In the present study, we used GABA to increase rotifer reproduction and the swimming activity of rotifers in enrichment cultures. GABA treatment 24 h before high density enrichment enhanced reproduction during enrichment culture, but not when carried out simultaneously with enrichment. Swimming activity was not significantly affected by GABA treatment 24 h before or simultaneously with nutrient enrichment.
