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Alfredo Ortega Rubio - One of the best experts on this subject based on the ideXlab platform.
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México.Megapitaria squalida (Bivalvia: Veneridae) fishery landings and temperature relationship in Bahía de la Paz, México. The clam Megapitaria squalida is a fishing resource with increasing importance in Northwestern Mexico. Nevertheless, this fishery has shown important variations that could be related to environmental factors. To assess this, monthly landings of M. squalida were analyzed during 2002-2005 for Bahía de La Paz, B.C.S., and were related with monthly time series of sea surface temperature, derived from MODIS-Aqua Sensor. The results showed a positive and significant relationship between sea surface temperature and clam landings. The likely impact of anomalous conditions of sea temperature on this resource is discussed. Rev. Biol. Trop. 59 (1): 151-157. Epub 2011 March 01
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México
Mariana Vázquez Hurtado - One of the best experts on this subject based on the ideXlab platform.
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México.Megapitaria squalida (Bivalvia: Veneridae) fishery landings and temperature relationship in Bahía de la Paz, México. The clam Megapitaria squalida is a fishing resource with increasing importance in Northwestern Mexico. Nevertheless, this fishery has shown important variations that could be related to environmental factors. To assess this, monthly landings of M. squalida were analyzed during 2002-2005 for Bahía de La Paz, B.C.S., and were related with monthly time series of sea surface temperature, derived from MODIS-Aqua Sensor. The results showed a positive and significant relationship between sea surface temperature and clam landings. The likely impact of anomalous conditions of sea temperature on this resource is discussed. Rev. Biol. Trop. 59 (1): 151-157. Epub 2011 March 01
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México
Marco Passamonti - One of the best experts on this subject based on the ideXlab platform.
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The complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus (Bivalvia, Veneridae)
PeerJ, 2017Co-Authors: Fabrizio Ghiselli, Liliana Milani, Mariangela Iannello, Emanuele Procopio, Peter L. Chang, Sergey V. Nuzhdin, Marco PassamontiAbstract:Despite the large number of animal complete mitochondrial genomes currently available in public databases, knowledge about mitochondrial genomics in invertebrates is uneven. This paper reports, for the first time, the complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus, also known as the European clam. Ruditapes decussatus is morphologically and ecologically similar to the Manila clam Ruditapes philippinarum, which has been recently introduced for aquaculture in the very same habitats of Ruditapes decussatus, and that is replacing the native species. Currently the production of the European clam is almost insignificant, nonetheless it is considered a high value product, and therefore it is an economically important species, especially in Portugal, Spain and Italy. In this work we: (i) assembled Ruditapes decussatus mitochondrial genome from RNA-Seq data, and validated it by Sanger sequencing; (ii) analyzed and characterized the Ruditapes decussatus mitochondrial genome, comparing its features with those of other venerid bivalves; (iii) assessed mitochondrial sequence polymorphism (SP) and copy number variation (CNV) of tandem repeats across 26 samples. Despite using high-throughput approaches we did not find evidence for the presence of two sex-linked mitochondrial genomes, typical of the doubly uniparental inheritance of mitochondria, a phenomenon known in ∼100 bivalve species. According to our analyses, Ruditapes decussatus is more genetically similar to species of the Genus Paphia than to the congeneric Ruditapes philippinarum, a finding that bolsters the already-proposed need of a taxonomic revision. We also found a quite low genetic variability across the examined samples, with few SPs and little variability of the sequences flanking the control region (Largest Unassigned Regions (LURs). Strikingly, although we found low nucleotide variability along the entire mitochondrial genome, we observed high levels of length polymorphism in the LUR due to CNV of tandem repeats, and even a LUR length heteroplasmy in two samples. It is not clear if the lack of genetic variability in the mitochondrial genome of Ruditapes decussatus is a cause or an effect of the ongoing replacement of Ruditapes decussatus with the invasive Ruditapes philippinarum, and more analyses, especially on nuclear sequences, are required to assess this point.
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The Complete Mitochondrial Genome of the Grooved Carpet Shell, Ruditapes decussatus (Bivalvia, Veneridae).
2017Co-Authors: Fabrizio Ghiselli, Liliana Milani, Mariangela Iannello, Emanuele Procopio, Peter L. Chang, Sergey V. Nuzhdin, Marco PassamontiAbstract:Supplementary files of the article entitled: "The Complete Mitochondrial Genome of the Grooved Carpet Shell, Ruditapes decussatus (Bivalvia, Veneridae)".AbstractDespite the large number of animal complete mitochondrial genomes currently available in public databases, knowledge about mitochondrial genomics in invertebrates is uneven. This paper reports, for the first time, the complete mitochondrial genome of the grooved carpet shell, Ruditapes decussatus, also known as the European clam. R. decussatus is morphologically and ecologically similar to the Manila clam Ruditapes philippinarum, which has been recently introduced for aquaculture in the very same habitats of R. decussatus, and that is replacing the native species. Currently the production of the European clam is almost insignificant, nonetheless it is considered a high value product, and therefore it is an economically important species, especially in Portugal, Spain and Italy.In this work we: i) assembled R. decussatus mitochondrial genome from RNA-Seq data, and validated it by Sanger sequencing, ii) analyzed and characterized the R. decussatus mitochondrial genome, comparing its features with those of other venerid bivalves; iii) assessed mitochondrial sequence polymorphism (SP) and copy number variation (CNV) of tandem repeats across 26 samples.Despite using high-throughput approaches we did not find evidence for the presence of two sex-linked mitochondrial genomes, typical of the Doubly Uniparental Inheritance of mitochondria, a phenomenon known in ~100 bivalve species. According to our analyses, R. decussatus is more genetically similar to species of the Genus Paphia than to the congeneric R. philippinarum, a finding that bolsters the already-proposed need of a taxonomic revision. We also found a quite low genetic variability across the examined samples, with few SPs and little variability of the sequences flanking the control region (Largest Unassigned Regions, LURs). Strikingly, although we found low nucleotide variability along the entire mitochondrial genome, we observed high levels of length polymorphism in the LUR due to CNV of tandem repeats, and even a LUR length heteroplasmy in two samples. It is not clear if the lack of genetic variability in the mitochondrial genome of R. decussatus is a cause or an effect of the ongoing replacement of R. decussatus with the invasive R. philippinarum, and more analyses, especially on nuclear sequences, are required to assess this point.
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PCA plot.
2016Co-Authors: Stefano Bettinazzi, Federico Plazzi, Marco PassamontiAbstract:Principal Component Analysis (PCA) based on both Jin-Nei and Kimura distances reported in Table 4. Colors refer to different families: blue, Unionidae with the exception of Hyriopsis spp. (brown; see text for details); Indian red, Mytilidae; green, Veneridae. AnAn, Anodonta anatina; HyCu, Hyriopsis cumingii; HySc, Hyriopsis schlegelii; MeLa, Meretrix lamarckii; MuSe, Musculista senhousia; MyCa, Mytilus californianus; MyEd, Mytilus edulis; MyGa, Mytilus galloprovincialis; MyTr, Mytilus trossulus; PyGr, Pyganodon grandis; QuQu; Quadrula quadrula; RuPh, Ruditapes philippinarum; SoCa, Solenaia carinatus; UtPe; Utterbackia peninsularis; VeEl, Venustaconcha ellipsiformis.
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The Complete Female- and Male-Transmitted Mitochondrial Genome of Meretrix lamarckii
2016Co-Authors: Stefano Bettinazzi, Federico Plazzi, Marco PassamontiAbstract:Bivalve mitochondrial genomes show many uncommon features, like additional genes, high rates of gene rearrangement, high A-T content. Moreover, Doubly Uniparental Inheritance (DUI) is a distinctive inheritance mechanism allowing some bivalves to maintain and transmit two separate sex-linked mitochondrial genomes. Many bivalve mitochondrial features, such as gene extensions or additional ORFs, have been proposed to be related to DUI but, up to now, this topic is far from being understood. Several species are known to show this unusual organelle inheritance but, being widespread only among Unionidae and Mytilidae, DUI distribution is unclear. We sequenced and characterized the complete female- (F) and male-transmitted (M) mitochondrial genomes of Meretrix lamarckii, which, in fact, is the second species of the family Veneridae where DUI has been demonstrated so far. The two mitochondrial genomes are comparable in length and show roughly the same gene content and order, except for three additional tRNAs found in the M one. The two sex-linked genomes show an average nucleotide divergence of 16%. A 100-aminoacid insertion in M. lamarckii M-cox2 gene was found; moreover, additional ORFs have been found in both F and M Long Unassigned Regions of M. lamarckii. Even if no direct involvement in DUI process has been demonstrated so far, the finding of cox2 insertions and supernumerary ORFs in M. lamarckii both strengthens this hypothesis and widens the taxonomical distribution of such unusual features. Finally, the analysis of inter-sex genetic variability shows that DUI species form two separate clusters, namely Unionidae and Mytilidae+Veneridae; this dichotomy is probably due to different DUI regimes acting on separate taxa.
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Phylogenetic analysis.
2016Co-Authors: Stefano Bettinazzi, Federico Plazzi, Marco PassamontiAbstract:Maximum Likelihood phylogenetic analysis of the family Veneridae using complete mitochondrial genomes and Acanthocardia tuberculata (Cardiidae), Hiatella arctica (Hiatellidae), and Coelomactra antiquata (Mactridae) as outgroups. Shown is the consensus of ML trees obtained from 1,000 bootstrap replicates; number at the nodes are bootstrap proportions. Purple bars mark known DUI species.
Marlenne Manzano Sarabia - One of the best experts on this subject based on the ideXlab platform.
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México.Megapitaria squalida (Bivalvia: Veneridae) fishery landings and temperature relationship in Bahía de la Paz, México. The clam Megapitaria squalida is a fishing resource with increasing importance in Northwestern Mexico. Nevertheless, this fishery has shown important variations that could be related to environmental factors. To assess this, monthly landings of M. squalida were analyzed during 2002-2005 for Bahía de La Paz, B.C.S., and were related with monthly time series of sea surface temperature, derived from MODIS-Aqua Sensor. The results showed a positive and significant relationship between sea surface temperature and clam landings. The likely impact of anomalous conditions of sea temperature on this resource is discussed. Rev. Biol. Trop. 59 (1): 151-157. Epub 2011 March 01
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Relación entre las capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en la Bahía de la Paz, Baja California Sur, México
Vicerractoría Investigación, 2011Co-Authors: Mariana Vázquez Hurtado, Marlenne Manzano Sarabia, Alfredo Ortega RubioAbstract:La almeja chocolate Megapitaria squalida es un recurso pesquero con creciente importancia en el noroeste de México al registrarse un incremento en los volúmenes de captura. Sin embargo, esta pesquería ha observado variaciones importantes en las capturas que podrían estar relacionadas con factores ambientales. Se obtuvieron datos mensuales de producción de M. squalida durante 2002- 2005 y se estimaron series de tiempo de temperatura superficial del mar en la Bahía de La Paz B.C.S. a partir de imágenes mensuales derivadas del sensor MODIS-Aqua. Los resultados indican una relación positiva significativa entre la temperatura superficial del mar y los volúmenes de captura, razón por la cual nuestro trabajo tiene como objetivo estudiar las relaciones entre capturas de Megapitaria squalida (Bivalvia: Veneridae) y la temperatura superficial del mar en La Bahía de la Paz, Baja California Sur, México
Walter Narchi - One of the best experts on this subject based on the ideXlab platform.
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Anatomia funcional de Protothaca (Leukoma) pectorina (Lamarck) (Bivalvia, Veneridae) Functional anatomy of Protothaca (Leukoma) pectorina (Lamarck) (Bivalvia, Veneridae)
Sociedade Brasileira de Zoologia, 2000Co-Authors: Cordélia De Oliveira Castro Guerón, Walter NarchiAbstract:Protothaca (Leukoma) pectorina (Lamarck, 1818) lives from the West Indies to Santa Catarina State, Brazil, in soft muddy beaches in quiet waters of protected bays with little amounts of suspended material. A study of the functional anatomy of P. pectorina and its ecological aspects were undertaken. The anatomy and functioning of the stomach and the mechanisms for selection of particles were observed. The siphons, ctenidia, labial palps and stomach were analised and related to the animal's natural environment. The siphons belong to type B (Yonge 1948), the ctenidia to type C (1a) (Atkins 1937). The ctenidia are homorhabdic (Ridewood 1903) and the stomach belongs to type V (Purchon 1960)
