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Chelsea D. Specht - One of the best experts on this subject based on the ideXlab platform.
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Comparative analysis of whole flower transcriptomes in the Zingiberales.
PeerJ, 2018Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Alma Piñeyro-nelson, Chelsea D. SpechtAbstract:The advancement of next generation sequencing technologies (NGS) has revolutionized our ability to generate large quantities of data at a genomic scale. Despite great challenges, these new sequencing technologies have empowered scientists to explore various relevant biological questions on non-model organisms, even in the absence of a complete sequenced reference genome. Here, we analyzed whole flower transcriptome libraries from exemplar species across the monocot order Zingiberales, using a comparative approach in order to gain insight into the evolution of the molecular mechanisms underlying flower development in the group. We identified 4,153 coding genes shared by all floral transcriptomes analyzed, and 1,748 genes that are only retrieved in the Zingiberales. We also identified 666 genes that are unique to the ginger lineage, and 2,001 that are only found in the banana group, while in the outgroup species Dichorisandra thyrsiflora J.C. Mikan (Commelinaceae) we retrieved 2,686 unique genes. It is possible that some of these genes underlie lineage-specific molecular mechanisms of floral diversification. We further discuss the nature of these lineage-specific datasets, emphasizing conserved and unique molecular processes with special emphasis in the Zingiberales. We also briefly discuss the strengths and shortcomings of de novo assembly for the study of developmental processes across divergent taxa from a particular order. Although this comparison is based exclusively on coding genes, with particular emphasis in transcription factors, we believe that the careful study of other regulatory mechanisms, such as non-coding RNAs, might reveal new levels of complexity, which were not explored in this work.
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Building the monocot tree of death: Progress and challenges emerging from the macrofossil‐rich Zingiberales
American journal of botany, 2018Co-Authors: Selena Y. Smith, John C. Benedict, William J. D. Iles, Chelsea D. SpechtAbstract:PREMISE OF THE STUDY Inclusion of fossils in phylogenetic analyses is necessary in order to construct a comprehensive "tree of death" and elucidate evolutionary history of taxa; however, such incorporation of fossils in phylogenetic reconstruction is dependent on the availability and interpretation of extensive morphological data. Here, the Zingiberales, whose familial relationships have been difficult to resolve with high support, are used as a case study to illustrate the importance of including fossil taxa in systematic studies. METHODS Eight fossil taxa and 43 extant Zingiberales were coded for 39 morphological seed characters, and these data were concatenated with previously published molecular sequence data for analysis in the program MrBayes. KEY RESULTS Ensete oregonense is confirmed to be part of Musaceae, and the other seven fossils group with Zingiberaceae. There is strong support for Spirematospermum friedrichii, Spirematospermum sp. 'Goth', S. wetzleri, and Striatornata sanantoniensis in crown Zingiberaceae while "Musa" cardiosperma, Spirematospermum chandlerae, and Tricostatocarpon silvapinedae are best considered stem Zingiberaceae. Inclusion of fossils explains how different topologies from morphological and molecular data sets is due to shared plesiomorphic characters shared by Musaceae, Zingiberaceae, and Costaceae, and most of the fossils. CONCLUSIONS Inclusion of eight fossil taxa expands the Zingiberales tree and helps explain the difficulty in resolving relationships. Inclusion of fossils was possible in part due to a large morphological data set built using nondestructive microcomputed tomography data. Collaboration between paleo- and neobotanists and technology such as microcomputed tomography will help to build the tree of death and ultimately improve our understanding of the evolutionary history of monocots.
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building the monocot tree of death progress and challenges emerging from the macrofossil rich Zingiberales
American Journal of Botany, 2018Co-Authors: Selena Y. Smith, John C. Benedict, William J. D. Iles, Chelsea D. SpechtAbstract:PREMISE OF THE STUDY Inclusion of fossils in phylogenetic analyses is necessary in order to construct a comprehensive "tree of death" and elucidate evolutionary history of taxa; however, such incorporation of fossils in phylogenetic reconstruction is dependent on the availability and interpretation of extensive morphological data. Here, the Zingiberales, whose familial relationships have been difficult to resolve with high support, are used as a case study to illustrate the importance of including fossil taxa in systematic studies. METHODS Eight fossil taxa and 43 extant Zingiberales were coded for 39 morphological seed characters, and these data were concatenated with previously published molecular sequence data for analysis in the program MrBayes. KEY RESULTS Ensete oregonense is confirmed to be part of Musaceae, and the other seven fossils group with Zingiberaceae. There is strong support for Spirematospermum friedrichii, Spirematospermum sp. 'Goth', S. wetzleri, and Striatornata sanantoniensis in crown Zingiberaceae while "Musa" cardiosperma, Spirematospermum chandlerae, and Tricostatocarpon silvapinedae are best considered stem Zingiberaceae. Inclusion of fossils explains how different topologies from morphological and molecular data sets is due to shared plesiomorphic characters shared by Musaceae, Zingiberaceae, and Costaceae, and most of the fossils. CONCLUSIONS Inclusion of eight fossil taxa expands the Zingiberales tree and helps explain the difficulty in resolving relationships. Inclusion of fossils was possible in part due to a large morphological data set built using nondestructive microcomputed tomography data. Collaboration between paleo- and neobotanists and technology such as microcomputed tomography will help to build the tree of death and ultimately improve our understanding of the evolutionary history of monocots.
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Gondwanan Vicariance or Dispersal in the Tropics? The Biogeographic History of the Tropical Monocot Family Costaceae (Zingiberales)
Aliso, 2017Co-Authors: Chelsea D. SpechtAbstract:Costaceae are a pantropical family, distinguished from other families within the order Zingiberales by their spiral phyllotaxy and showy labellum comprised of five fused staminodes. While the majority of Costaceae species are found in the neotropics, the pantropical distribution of the family as a whole could be due to a number of historical biogeographic scenarios, including continental-drift mediated vicariance and long-distance dispersal events. Here, the hypothesis of an ancient Gondwanan distribution followed by vicariance via continental drift as the leading cause of the current pantropical distribution of Costaceae is tested, using molecular dating of cladogenic events combined with phylogeny-based biogeographic analyses. Dispersal-Vicariance Analysis (DIVA) is used to determine ancestral distributions based upon the modern distribution of extant taxa in a phylogenetic context. Diversification ages within Costaceae are estimated using chloroplast DNA data (trnL-F and trnK) analyzed with a local clock procedure. In the absence of fossil evidence, the divergence time between Costaceae and Zingiberaceae, as estimated in an ordinal analysis of Zingiberales, is used as the calibration point for converting relative to absolute ages. The results of the temporal analysis based on extant taxa indicate that the initial diversification within Costaceae occurred approximately 65 million years ago, long after the final break up of the Gondwanan supercontinent. Considering this minimum age of diversification, potential scenarios for the current biogeographic patterns found in Costaceae are presented in a temporal and spatial context. The evolution of specialized floral forms associated with specific pollinators is also discussed within the biogeographic framework.
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Change of Fate and Staminodial Laminarity as Potential Agents of Floral Diversification in the Zingiberales.
Journal of experimental zoology. Part B Molecular and developmental evolution, 2017Co-Authors: Alma Piñeyro-nelson, Chodon Sass, Ana Maria Rocha De Almeida, William J. D. Iles, Chelsea D. SpechtAbstract:The evolution of floral morphology in the monocot order Zingiberales shows a trend in which androecial whorl organs are progressively modified into variously conspicuous "petaloid" structures with differing degrees of fertility. Petaloidy of androecial members results from extensive laminarization of an otherwise radially symmetric structure. The genetic basis of the laminarization of androecial members has been addressed through recent candidate gene studies focused on understanding the spatiotemporal expression patterns of genes known to be necessary to floral organ formation. Here, we explore the correlation between gene duplication events and floral and inflorescence morphological diversification across the Zingiberales by inferring ancestral character states and gene copy number using the most widely accepted phylogenetic hypotheses. Our results suggest that the duplication and differential loss of GLOBOSA (GLO) copies is correlated with a change in the degree of the laminarization of androecial members. We also find an association with increased diversification in most families. We hypothesize that retention of paralogs in flower development genes could have led to a developmental shift affecting androecial organs with potential adaptive consequences, thus favoring diversification in some lineages but not others.
Roxana Yockteng - One of the best experts on this subject based on the ideXlab platform.
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Comparative analysis of whole flower transcriptomes in the Zingiberales.
PeerJ, 2018Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Alma Piñeyro-nelson, Chelsea D. SpechtAbstract:The advancement of next generation sequencing technologies (NGS) has revolutionized our ability to generate large quantities of data at a genomic scale. Despite great challenges, these new sequencing technologies have empowered scientists to explore various relevant biological questions on non-model organisms, even in the absence of a complete sequenced reference genome. Here, we analyzed whole flower transcriptome libraries from exemplar species across the monocot order Zingiberales, using a comparative approach in order to gain insight into the evolution of the molecular mechanisms underlying flower development in the group. We identified 4,153 coding genes shared by all floral transcriptomes analyzed, and 1,748 genes that are only retrieved in the Zingiberales. We also identified 666 genes that are unique to the ginger lineage, and 2,001 that are only found in the banana group, while in the outgroup species Dichorisandra thyrsiflora J.C. Mikan (Commelinaceae) we retrieved 2,686 unique genes. It is possible that some of these genes underlie lineage-specific molecular mechanisms of floral diversification. We further discuss the nature of these lineage-specific datasets, emphasizing conserved and unique molecular processes with special emphasis in the Zingiberales. We also briefly discuss the strengths and shortcomings of de novo assembly for the study of developmental processes across divergent taxa from a particular order. Although this comparison is based exclusively on coding genes, with particular emphasis in transcription factors, we believe that the careful study of other regulatory mechanisms, such as non-coding RNAs, might reveal new levels of complexity, which were not explored in this work.
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A rticle Molecular Evolution and Patterns of Duplication in the SEP/AGL6-Like Lineage of the Zingiberales: A Proposed Mechanism for Floral Diversification
2016Co-Authors: Roxana Yockteng, Chelsea D. Specht, Kelsie Morioka, Ana M. R. Almeida, Elena R. Alvarez-buylla, Associate Michael PuruggananAbstract:The diversity of floral forms in the plant order Zingiberales has evolved through alterations in floral organ morphology. One striking alteration is the shift from fertile, filamentous stamens to sterile, laminar (petaloid) organs in the stamen whorls, attributed to specific pollination syndromes. Here, we examine the role of the SEPALLATA (SEP) genes, known to be important in regulatory networks underlying floral development and organ identity, in the evolution of development of the diverse floral organs phenotypes in the Zingiberales. Phylogenetic analyses show that the SEP-like genes have undergone several duplication events giving rise to multiple copies. Selection tests on the SEP-like genes indicate that the two copies of SEP3 have mostly evolved under balancing selection, probably due to strong functional restrictions as a result of their critical role in floral organ specification. In contrast, the two LOFSEP copies have undergone differential positive selection, indicating neofunctionalization. Reverse transcriptase-polymerase chain reaction, gene expression from RNA-seq data, and in situ hybridization analyses show that the recovered genes have differential expression patterns across the various whorls and organ types found in the Zingiberales. Our data also suggest thatAGL6, sister to the SEP-like genes, may play an important role in stamen morphology in the Zingiberales. Thus, the SEP-like genes are likely to be involved in some of the unique morphogenetic patterns of floral organ development found among this diverse order o
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Loss of YABBY2-Like Gene Expression May Underlie the Evolution of the Laminar Style in Canna and Contribute to Floral Morphological Diversity in the Zingiberales
Frontiers in plant science, 2015Co-Authors: Kelsie Morioka, Roxana Yockteng, Ana Maria Rocha De Almeida, Chelsea D. SpechtAbstract:The Zingiberales is an order of tropical monocots that exhibits diverse floral morphologies. The evolution of petaloid, laminar stamens, staminodes, and styles contributes to this diversity. The laminar style is a derived trait in the family Cannaceae and plays an important role in pollination as its surface is used for secondary pollen presentation. Previous work in the Zingiberales has implicated YABBY2-like genes, which function in promoting laminar outgrowth, in the evolution of stamen morphology. Here, we investigate the evolution and expression of Zingiberales YABBY2-like genes in order to understand the evolution of the laminar style in Canna. Phylogenetic analyses show that multiple duplication events have occurred in this gene lineage prior to the diversification of the Zingiberales. Reverse transcription-PCR in Canna, Costus, and Musa reveals differential expression across floral organs, taxa, and gene copies, and a role for YABBY2-like genes in the evolution of the laminar style is proposed. Selection tests indicate that almost all sites in conserved domains are under purifying selection, consistent with their functional relevance, and a motif unique to monocot YABBY2-like genes is identified. These results contribute to our understanding of the molecular mechanisms underlying the evolution of floral morphologies.
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Evolution of petaloidy in the Zingiberales: An assessment of the relationship between ultrastructure and gene expression patterns
Developmental dynamics : an official publication of the American Association of Anatomists, 2015Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Chelsea D. SpechtAbstract:Background: The development of petal-like organs has occurred repetitively throughout angiosperm evolution. Despite homoplasy, it is possible that common underlying molecular mechanisms are repeatedly recruited to drive the development of petaloid organs. In Zingiberales, infertile, petal-like structures replace fertile stamens, resulting in petaloidy in androecial whorls. Assuming that androecial petaloidy is a shared derived characteristic, we expect to find common ultrastructure and molecular mechanisms underlying androecial petaloidy across Zingiberales. Results: We show that petaloidy in Zingiberales is associated with tightly packed, protruding epidermal cells. Expression patterns for candidate genes involved in petal identity differ between the petaloid organs of Costaceae v. Cannaceae, despite similar macro- and microscopic organization. For all candidate gene families analyzed, our data suggest at least one Zingiberales-specific duplication event. Conclusions: Our data suggest that the patterns of B-class gene expression across the Zingiberales do not correlate with the occurrence of petaloidy, indicating that androecial petaloidy might have evolved independently of B-class gene expression in some lineages. It is possible that gene duplication may play a role in the diversity of petaloid structures found throughout the Zingiberales. It is likely that Zingiberales petaloidy may also result from the deployment of genes other than those involved in specification of petal identity. Developmental Dynamics 244:1121–1132, 2015. © 2015 Wiley Periodicals, Inc.
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Positive selection on the K domain of the AGAMOUS protein in the Zingiberales suggests a mechanism for the evolution of androecial morphology
EvoDevo, 2015Co-Authors: Ana Maria R Almeida, Roxana Yockteng, Wagner Campos Otoni, Chelsea D. SpechtAbstract:Background The ABC model of flower development describes the molecular basis for specification of floral organ identity in model eudicots such as Arabidopsis and Antirrhinum . According to this model, expression of C-class genes is linked to stamen and gynoecium organ identity. The Zingiberales is an order of tropical monocots in which the evolution of floral morphology is characterized by a marked increase in petaloidy in the androecium. Petaloidy is a derived characteristic of the ginger families and seems to have arisen in the common ancestor of the ginger clade. We hypothesize that duplication of the C-class AGAMOUS ( AG ) gene followed by divergence of the duplicated AG copies during the diversification of the ginger clade lineages explains the evolution of petaloidy in the androecium. In order to address this hypothesis, we carried out phylogenetic analyses of the AG gene family across the Zingiberales and investigated patterns of gene expression within the androecium. Results Phylogenetic analysis supports a scenario in which Zingiberales-specific AG genes have undergone at least one round of duplication. Gene duplication was immediately followed by divergence of the retained copies. In particular, we detect positive selection in the third alpha-helix of the K domain of Zingiberales AGAMOUS copy 1 ( ZinAG-1 ). A single fixed amino acid change is observed in ZinAG-1 within the ginger clade when compared to the banana grade. Expression analyses of AG and APETALA1/FRUITFULL ( AP1/FUL ) in Musa basjoo is similar to A- and C-class gene expressions in the Arabidopsis thaliana model, while Costus spicatus exhibits simultaneous expression of AG and AP1/FUL in most floral organs. We propose that this novel expression pattern could be correlated with the evolution of androecial petaloidy within the Zingiberales. Conclusions Our results present an intricate story in which duplication of the AG lineage has lead to the retention of at least two diverged Zingiberales-specific copies, ZinAG-1 and Zingiberales AGAMOUS copy 2 ( ZinAG-2 ). Positive selection on ZinAG-1 residues suggests a mechanism by which AG gene divergence may explain observed morphological changes in Zingiberales flowers. Expression data provides preliminary support for the proposed mechanism, although further studies are required to fully test this hypothesis.
Ana Maria Rocha De Almeida - One of the best experts on this subject based on the ideXlab platform.
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Comparative analysis of whole flower transcriptomes in the Zingiberales.
PeerJ, 2018Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Alma Piñeyro-nelson, Chelsea D. SpechtAbstract:The advancement of next generation sequencing technologies (NGS) has revolutionized our ability to generate large quantities of data at a genomic scale. Despite great challenges, these new sequencing technologies have empowered scientists to explore various relevant biological questions on non-model organisms, even in the absence of a complete sequenced reference genome. Here, we analyzed whole flower transcriptome libraries from exemplar species across the monocot order Zingiberales, using a comparative approach in order to gain insight into the evolution of the molecular mechanisms underlying flower development in the group. We identified 4,153 coding genes shared by all floral transcriptomes analyzed, and 1,748 genes that are only retrieved in the Zingiberales. We also identified 666 genes that are unique to the ginger lineage, and 2,001 that are only found in the banana group, while in the outgroup species Dichorisandra thyrsiflora J.C. Mikan (Commelinaceae) we retrieved 2,686 unique genes. It is possible that some of these genes underlie lineage-specific molecular mechanisms of floral diversification. We further discuss the nature of these lineage-specific datasets, emphasizing conserved and unique molecular processes with special emphasis in the Zingiberales. We also briefly discuss the strengths and shortcomings of de novo assembly for the study of developmental processes across divergent taxa from a particular order. Although this comparison is based exclusively on coding genes, with particular emphasis in transcription factors, we believe that the careful study of other regulatory mechanisms, such as non-coding RNAs, might reveal new levels of complexity, which were not explored in this work.
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Change of Fate and Staminodial Laminarity as Potential Agents of Floral Diversification in the Zingiberales.
Journal of experimental zoology. Part B Molecular and developmental evolution, 2017Co-Authors: Alma Piñeyro-nelson, Chodon Sass, Ana Maria Rocha De Almeida, William J. D. Iles, Chelsea D. SpechtAbstract:The evolution of floral morphology in the monocot order Zingiberales shows a trend in which androecial whorl organs are progressively modified into variously conspicuous "petaloid" structures with differing degrees of fertility. Petaloidy of androecial members results from extensive laminarization of an otherwise radially symmetric structure. The genetic basis of the laminarization of androecial members has been addressed through recent candidate gene studies focused on understanding the spatiotemporal expression patterns of genes known to be necessary to floral organ formation. Here, we explore the correlation between gene duplication events and floral and inflorescence morphological diversification across the Zingiberales by inferring ancestral character states and gene copy number using the most widely accepted phylogenetic hypotheses. Our results suggest that the duplication and differential loss of GLOBOSA (GLO) copies is correlated with a change in the degree of the laminarization of androecial members. We also find an association with increased diversification in most families. We hypothesize that retention of paralogs in flower development genes could have led to a developmental shift affecting androecial organs with potential adaptive consequences, thus favoring diversification in some lineages but not others.
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Loss of YABBY2-Like Gene Expression May Underlie the Evolution of the Laminar Style in Canna and Contribute to Floral Morphological Diversity in the Zingiberales
Frontiers in plant science, 2015Co-Authors: Kelsie Morioka, Roxana Yockteng, Ana Maria Rocha De Almeida, Chelsea D. SpechtAbstract:The Zingiberales is an order of tropical monocots that exhibits diverse floral morphologies. The evolution of petaloid, laminar stamens, staminodes, and styles contributes to this diversity. The laminar style is a derived trait in the family Cannaceae and plays an important role in pollination as its surface is used for secondary pollen presentation. Previous work in the Zingiberales has implicated YABBY2-like genes, which function in promoting laminar outgrowth, in the evolution of stamen morphology. Here, we investigate the evolution and expression of Zingiberales YABBY2-like genes in order to understand the evolution of the laminar style in Canna. Phylogenetic analyses show that multiple duplication events have occurred in this gene lineage prior to the diversification of the Zingiberales. Reverse transcription-PCR in Canna, Costus, and Musa reveals differential expression across floral organs, taxa, and gene copies, and a role for YABBY2-like genes in the evolution of the laminar style is proposed. Selection tests indicate that almost all sites in conserved domains are under purifying selection, consistent with their functional relevance, and a motif unique to monocot YABBY2-like genes is identified. These results contribute to our understanding of the molecular mechanisms underlying the evolution of floral morphologies.
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Evolution of petaloidy in the Zingiberales: An assessment of the relationship between ultrastructure and gene expression patterns
Developmental dynamics : an official publication of the American Association of Anatomists, 2015Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Chelsea D. SpechtAbstract:Background: The development of petal-like organs has occurred repetitively throughout angiosperm evolution. Despite homoplasy, it is possible that common underlying molecular mechanisms are repeatedly recruited to drive the development of petaloid organs. In Zingiberales, infertile, petal-like structures replace fertile stamens, resulting in petaloidy in androecial whorls. Assuming that androecial petaloidy is a shared derived characteristic, we expect to find common ultrastructure and molecular mechanisms underlying androecial petaloidy across Zingiberales. Results: We show that petaloidy in Zingiberales is associated with tightly packed, protruding epidermal cells. Expression patterns for candidate genes involved in petal identity differ between the petaloid organs of Costaceae v. Cannaceae, despite similar macro- and microscopic organization. For all candidate gene families analyzed, our data suggest at least one Zingiberales-specific duplication event. Conclusions: Our data suggest that the patterns of B-class gene expression across the Zingiberales do not correlate with the occurrence of petaloidy, indicating that androecial petaloidy might have evolved independently of B-class gene expression in some lineages. It is possible that gene duplication may play a role in the diversity of petaloid structures found throughout the Zingiberales. It is likely that Zingiberales petaloidy may also result from the deployment of genes other than those involved in specification of petal identity. Developmental Dynamics 244:1121–1132, 2015. © 2015 Wiley Periodicals, Inc.
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Positive selection on the K domain of the AGAMOUS protein in the Zingiberales suggests a mechanism for the evolution of androecial morphology
EvoDevo, 2015Co-Authors: Ana Maria Rocha De Almeida, Roxana Yockteng, Wagner Campos Otoni, Chelsea D. SpechtAbstract:The ABC model of flower development describes the molecular basis for specification of floral organ identity in model eudicots such as Arabidopsis and Antirrhinum. According to this model, expression of C-class genes is linked to stamen and gynoecium organ identity. The Zingiberales is an order of tropical monocots in which the evolution of floral morphology is characterized by a marked increase in petaloidy in the androecium. Petaloidy is a derived characteristic of the ginger families and seems to have arisen in the common ancestor of the ginger clade. We hypothesize that duplication of the C-class AGAMOUS (AG) gene followed by divergence of the duplicated AG copies during the diversification of the ginger clade lineages explains the evolution of petaloidy in the androecium. In order to address this hypothesis, we carried out phylogenetic analyses of the AG gene family across the Zingiberales and investigated patterns of gene expression within the androecium. Phylogenetic analysis supports a scenario in which Zingiberales-specific AG genes have undergone at least one round of duplication. Gene duplication was immediately followed by divergence of the retained copies. In particular, we detect positive selection in the third alpha-helix of the K domain of Zingiberales AGAMOUS copy 1 (ZinAG-1). A single fixed amino acid change is observed in ZinAG-1 within the ginger clade when compared to the banana grade. Expression analyses of AG and APETALA1/FRUITFULL (AP1/FUL) in Musa basjoo is similar to A- and C-class gene expressions in the Arabidopsis thaliana model, while Costus spicatus exhibits simultaneous expression of AG and AP1/FUL in most floral organs. We propose that this novel expression pattern could be correlated with the evolution of androecial petaloidy within the Zingiberales. Our results present an intricate story in which duplication of the AG lineage has lead to the retention of at least two diverged Zingiberales-specific copies, ZinAG-1 and Zingiberales AGAMOUS copy 2 (ZinAG-2). Positive selection on ZinAG-1 residues suggests a mechanism by which AG gene divergence may explain observed morphological changes in Zingiberales flowers. Expression data provides preliminary support for the proposed mechanism, although further studies are required to fully test this hypothesis.
W. John Kress - One of the best experts on this subject based on the ideXlab platform.
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Experimental assemblage of novel plant-herbivore interactions: ecological host shifts after 40 million years of isolation.
Biotropica, 2017Co-Authors: Carlos García-robledo, W. John Kress, Carol C. Horvitz, A. Nalleli Carvajal-acosta, Terry L. Erwin, Charles L. StainesAbstract:Geographic isolation is the first step in insect herbivore diet specialization. Such specialization is postulated to increase insect fitness, but may simultaneously reduce insect ability to colonize novel hosts. During the Paleocene-Eocene, plants from the order Zingiberales became isolated either in the Paleotropics or in the Neotropics. During the Cretaceous, rolled-leaf beetles diversified in the Neotropics concurrently with Neotropical Zingiberales. Using a community of Costa Rican rolled-leaf beetles and their Zingiberales host plants as study system, we explored if previous geographic isolation precludes insects to expand their diets to exotic hosts. We recorded interactions between rolled-leaf beetles and native Zingiberales by combining DNA barcodes and field records for 7450 beetles feeding on 3202 host plants. To determine phylogenetic patterns of diet expansions, we established 20 experimental plots in the field, in which we planted plots five exotic Zingiberales, recording beetles feeding on these exotic hosts. In the laboratory, using both native and exotic host plants, we reared a subset of insect species that had expanded their diets to the exotic plants. The original plant–herbivore community comprised 24 beetle species feeding on 35 native hosts, representing 103 plant–herbivore interactions. After exotic host plant introduction, 20 percent of the beetle species expanded their diets to exotic Zingiberales. Insects only established on exotic hosts that belong to the same plant family as their native hosts. Laboratory experiments show that beetles are able to complete development on these novel hosts. In conclusion, rolled-leaf beetles are preadapted to expand their diets to novel host plants even after millions of years of geographic isolation.
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Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes
PloS one, 2013Co-Authors: Carlos García-robledo, Terry L. Erwin, Charles L. Staines, David L. Erickson, W. John KressAbstract:Plants and their associated insect herbivores, represent more than 50% of all known species on earth. The first step in understanding the mechanisms generating and maintaining this important component of biodiversity is to identify plant-herbivore associations. In this study we determined insect-host plant associations for an entire guild of insect herbivores using plant DNA extracted from insect gut contents. Over two years, in a tropical rain forest in Costa Rica (La Selva Biological Station), we recorded the full diet breadth of rolled-leaf beetles, a group of herbivores that feed on plants in the order Zingiberales. Field observations were used to determine the accuracy of diet identifications using a three-locus DNA barcode (rbcL, trnH-psbA and ITS2). Using extraction techniques for ancient DNA, we obtained high-quality sequences for two of these loci from gut contents (rbcL and ITS2). Sequences were then compared to a comprehensive DNA barcode library of the Zingiberales. The rbcL locus identified host plants to family (success/sequence = 58.8%) and genus (success/sequence = 47%). For all Zingiberales except Heliconiaceae, ITS2 successfully identified host plants to genus (success/sequence = 67.1%) and species (success/sequence = 61.6%). Kindt's sampling estimates suggest that by collecting ca. four individuals representing each plant-herbivore interaction, 99% of all host associations included in this study can be identified to genus. For plants that amplified ITS2, 99% of the hosts can be identified to species after collecting at least four individuals representing each interaction. Our study demonstrates that host plant identifications at the species-level using DNA barcodes are feasible, cost-effective, and reliable, and that reconstructing plant-herbivore networks with these methods will become the standard for a detailed understanding of these interactions.
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Phylogenetic Relationships and Evolution in the Strelitziaceae (Zingiberales)
Systematic Botany, 2012Co-Authors: Glynis V. Cron, Madelaine E. Bartlett, W. John Kress, Cary Pirone, Chelsea D. SpechtAbstract:Abstract Evolutionary trends and phylogenetic relationships in the Strelitziaceae (Zingiberales) were investigated using sequence data from ten plastid and two nuclear regions and a morphological dataset. The status of species of Strelitzia were evaluated in terms of the phylogenetic species concept. Relationships among the genera remain equivocal with two hypotheses emerging: (i) Strelitzia sister to a clade comprising Ravenala and Phenakospermum when indels are included, or (ii) Ravenala sister to the remainder of the Strelitziaceae when indels are excluded in/from the combined molecular and ‘total evidence’ analyses. Within Strelitzia, S. nicolai is sister to the rest of the genus, with S. alba sister to S. caudata. Strelitzia reginae is shown to be paraphyletic as S. juncea is nested within it, but more sampling at the population level is needed to confirm the taxonomic status of S. juncea. The highly localized and endangered Strelitzia alba is confirmed as a distinct species, as are S. caudata and S....
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The evolutionary and biogeographic origin and diversification of the tropical monocot order Zingiberales
Aliso, 2006Co-Authors: W. John Kress, Chelsea D. SpechtAbstract:Zingiberales are a primarily tropical lineage of monocots. The current pantropical distribution of the order suggests an historical Gondwanan distribution, however the evolutionary history of the group has never been analyzed in a temporal context to test if the order is old enough to attribute its current distribution to vicariance mediated by the break-up of the supercontinent. Based on a phylogeny derived from morphological and molecular characters, we develop a hypothesis for the spatial and temporal evolution of Zingiberales using Dispersal-Vicariance Analysis (DIVA) combined with a local molecular clock technique that enables the simultaneous analysis of multiple gene loci with multiple calibration points. We employ a pairwise relative rates test to assign four rate classes to 24 ingroup and 12 outgroup taxa using evidence from three gene regions (rbcL, atpB, 18S). Five nodes of ingroup and outgroup taxa were calibrated using fossils and previous monocot-wide age estimates. The results are compared with non-parametric rate smoothing and penalized likelihood estimates of temporal diversification. The divergence of Zingiberales from the remaining commelinid monocots is found to have occurred around 124 million years ago, with major family-level lineages becoming established in the late Cretaceous (80-110 mya) and crown lineages within each family beginning to diversify during the early to mid-Tertiary (29-64 mya). Ancestral Gondwanan vicariance combined with a potential Laurasian distribution and multiple secondary dispersal events within families during the Tertiary can explain the main biogeographic events leading to the current pantropical distribution of this tropical order.
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eLS - Zingiberales (Gingers and Bananas)
Encyclopedia of Life Sciences, 2002Co-Authors: Linda M. Prince, W. John KressAbstract:The Zingiberales is a group of plants including gingers, bananas, heliconias and prayer plants. This group is made up of eight families distributed in tropical areas of Africa, the Americas, Asia and the South Pacific. Members are generally herbaceous, play an important ecological role in their native habitats, and are a source of foods, spices, medicines and ornamentals. Keywords: spice; fruit; medicinal; taxonomy; tropical
Charles L. Staines - One of the best experts on this subject based on the ideXlab platform.
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Experimental assemblage of novel plant-herbivore interactions: ecological host shifts after 40 million years of isolation.
Biotropica, 2017Co-Authors: Carlos García-robledo, W. John Kress, Carol C. Horvitz, A. Nalleli Carvajal-acosta, Terry L. Erwin, Charles L. StainesAbstract:Geographic isolation is the first step in insect herbivore diet specialization. Such specialization is postulated to increase insect fitness, but may simultaneously reduce insect ability to colonize novel hosts. During the Paleocene-Eocene, plants from the order Zingiberales became isolated either in the Paleotropics or in the Neotropics. During the Cretaceous, rolled-leaf beetles diversified in the Neotropics concurrently with Neotropical Zingiberales. Using a community of Costa Rican rolled-leaf beetles and their Zingiberales host plants as study system, we explored if previous geographic isolation precludes insects to expand their diets to exotic hosts. We recorded interactions between rolled-leaf beetles and native Zingiberales by combining DNA barcodes and field records for 7450 beetles feeding on 3202 host plants. To determine phylogenetic patterns of diet expansions, we established 20 experimental plots in the field, in which we planted plots five exotic Zingiberales, recording beetles feeding on these exotic hosts. In the laboratory, using both native and exotic host plants, we reared a subset of insect species that had expanded their diets to the exotic plants. The original plant–herbivore community comprised 24 beetle species feeding on 35 native hosts, representing 103 plant–herbivore interactions. After exotic host plant introduction, 20 percent of the beetle species expanded their diets to exotic Zingiberales. Insects only established on exotic hosts that belong to the same plant family as their native hosts. Laboratory experiments show that beetles are able to complete development on these novel hosts. In conclusion, rolled-leaf beetles are preadapted to expand their diets to novel host plants even after millions of years of geographic isolation.
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Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes
2016Co-Authors: David L. Erickson, Charles L. Staines, Terry L. Erwin, John W KressAbstract:Plants and their associated insect herbivores, represent more than 50 % of all known species on earth. The first step in understanding the mechanisms generating and maintaining this important component of biodiversity is to identify plant-herbivore associations. In this study we determined insect-host plant associations for an entire guild of insect herbivores using plant DNA extracted from insect gut contents. Over two years, in a tropical rain forest in Costa Rica (La Selva Biological Station), we recorded the full diet breadth of rolled-leaf beetles, a group of herbivores that feed on plants in the order Zingiberales. Field observations were used to determine the accuracy of diet identifications using a three-locus DNA barcode (rbcL, trnH-psbA and ITS2). Using extraction techniques for ancient DNA, we obtained high-quality sequences for two of these loci from gut contents (rbcL and ITS2). Sequences were then compared to a comprehensive DNA barcode library of the Zingiberales. The rbcL locus identified host plants to family (success/sequence = 58.8%) and genus (success/ sequence = 47%). For all Zingiberales except Heliconiaceae, ITS2 successfully identified host plants to genus (success/ sequence = 67.1%) and species (success/sequence = 61.6%). Kindt’s sampling estimates suggest that by collecting ca. four individuals representing each plant-herbivore interaction, 99 % of all host associations included in this study can be identified to genus. For plants that amplified ITS2, 99 % of the hosts can be identified to species after collecting at least four individuals representing each interaction. Our study demonstrates that host plant identifications at the species-level usin
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HERBIVORY IN GINGERS FROM LATEST CRETACEOUS TO PRESENT: IS THE ICHNOGENUS CEPHALOLEICHNITES (HISPINAE, COLEOPTERA)
2015Co-Authors: Rolled-leaf A Beetle, Charles L. StainesAbstract:IT IS suggested that rolled-leaf hispine beetles (Hispinae, Cole-optera) and plants from the order Zingiberales maintained a highly specialized plant-herbivore interaction for 60 My. The evidence supporting this old and conservative interaction are her-bivory marks found on leaves of the genus Zingiberopsis (Zin-giberaceae) from the latest Cretaceous and early Eocene. This fossil herbivory was described as the ichnotaxon Cephaloleich-nites strongii (Hispinae, Coleoptera), based on the assumption that this type of herbivory can be solely attributed to extant rolled-leaf beetles. This ichnotaxon has been a key element in several analyses on the origin, radiation and diversification of tropical insect herbivores. In this paper we report feeding patterns equiv-alent to those described in Zingiberopsis fossils but produced by larvae of Pyralidae and Choreutidae (Lepidoptera) and Anopsilus weevils (Curculionidae, Coleoptera) in four families of extant Zingiberales. We discuss the implications of C. strongii not being a rolled leaf beetle and how this may affect the current knowledge of the co-diversification of rolled-leaf beetles and their host plants from the order Zingiberales
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A new species of bromeliad-feeding Cephaloleia Chevrolat (Coleoptera, Chrysomelidae, Cassidinae) from Costa Rica: evidence from DNA barcodes, larval and adult morphology and insect diets.
ZooKeys, 2015Co-Authors: Carlos García-robledo, Charles L. Staines, W. J. KressAbstract:The Neotropical genus Cephaloleia Chevrolat (Coleoptera: Chrysomelidae: Cassidinae) includes 214 species distributed from the south of Mexico to Argentina. Cephaloleia beetles feed mostly on plants from the order Zingiberales. The interactions between Cephaloleia beetles and their Zingiberales host plants is proposed as one of the oldest and most conservative associations. Here we describe a new species of Cephaloleia (Cephaloleia kuprewiczae sp. n.) that feeds on two species of bromeliads (Pitcairnia arcuata and Pitcairnia brittoniana, Bromeliaceae: Pitcairnioideae). Cephaloleia kuprewiczae was previously described as Cephaloleia histrionica. This study includes evidence from DNA barcodes (COI), larval and adult morphology and insect diets that separates Cephaloleia kuprewiczae from Cephaloleia histrionica as a new species.
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Tropical Plant–Herbivore Networks: Reconstructing Species Interactions Using DNA Barcodes
PloS one, 2013Co-Authors: Carlos García-robledo, Terry L. Erwin, Charles L. Staines, David L. Erickson, W. John KressAbstract:Plants and their associated insect herbivores, represent more than 50% of all known species on earth. The first step in understanding the mechanisms generating and maintaining this important component of biodiversity is to identify plant-herbivore associations. In this study we determined insect-host plant associations for an entire guild of insect herbivores using plant DNA extracted from insect gut contents. Over two years, in a tropical rain forest in Costa Rica (La Selva Biological Station), we recorded the full diet breadth of rolled-leaf beetles, a group of herbivores that feed on plants in the order Zingiberales. Field observations were used to determine the accuracy of diet identifications using a three-locus DNA barcode (rbcL, trnH-psbA and ITS2). Using extraction techniques for ancient DNA, we obtained high-quality sequences for two of these loci from gut contents (rbcL and ITS2). Sequences were then compared to a comprehensive DNA barcode library of the Zingiberales. The rbcL locus identified host plants to family (success/sequence = 58.8%) and genus (success/sequence = 47%). For all Zingiberales except Heliconiaceae, ITS2 successfully identified host plants to genus (success/sequence = 67.1%) and species (success/sequence = 61.6%). Kindt's sampling estimates suggest that by collecting ca. four individuals representing each plant-herbivore interaction, 99% of all host associations included in this study can be identified to genus. For plants that amplified ITS2, 99% of the hosts can be identified to species after collecting at least four individuals representing each interaction. Our study demonstrates that host plant identifications at the species-level using DNA barcodes are feasible, cost-effective, and reliable, and that reconstructing plant-herbivore networks with these methods will become the standard for a detailed understanding of these interactions.
