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Jan-fang Cheng - One of the best experts on this subject based on the ideXlab platform.
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Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10 T )
Standards in genomic sciences, 2009Co-Authors: Alla Lapidus, Rüdiger Pukall, Kurt Labuttii, Alex Copeland, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-fang ChengAbstract:Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae, a rather isolated family within the actinobacterial suborder Micrococcineae. B. faecium is known for its rod-coccus growth cycle and the ability to degrade uric acid. It grows aerobically or weakly anaerobically. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from poultry deep litter. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the actinobacterial family Dermabacteraceae, and the 3,614,992 bp long single replicon genome with its 3129 protein-coding and 69 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6–10^T)
Standards in Genomic Sciences, 2009Co-Authors: Alla Lapidus, Rüdiger Pukall, Kurt Labuttii, Alex Copeland, Tijana Glavina Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-fang ChengAbstract:Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae , a rather isolated family within the actinobacterial suborder Micrococcineae . B. faecium is known for its rod-coccus growth cycle and the ability to degrade uric acid. It grows aerobically or weakly anaerobically. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from poultry deep litter. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the actinobacterial family Dermabacteraceae , and the 3,614,992 bp long single replicon genome with its 3129 protein-coding and 69 RNA genes is part of the G enomic E ncyclopedia of B acteria and A rchaea project.
Jin-woo Bae - One of the best experts on this subject based on the ideXlab platform.
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Genome Sequence of Brachybacterium squillarum M-6-3T, Isolated from Salt-Fermented Seafood
Journal of bacteriology, 2011Co-Authors: Seong-kyu Park, Seong Woon Roh, Tae Woong Whon, Jin-woo BaeAbstract:Brachybacterium squillarum M-6-3T was isolated from salt-fermented seafood in Korea and belongs to the Dermabacteraceae, a rather isolated family within the actinobacterial suborder Micrococcineae. Here, we present the draft genome sequence of the type strain Brachybacterium squillarum M-6-3T (3,191,479 bp), a Gram-positive bacterium with high (72.8%) G+C content.
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Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood.
International Journal of Systematic and Evolutionary Microbiology, 2011Co-Authors: Seong-kyu Park, Seong Woon Roh, Min-soo Kim, Mi-ja Jung, Young-do Nam, Eun-jin Park, Jin-woo BaeAbstract:members of the genus Brachybacterium and closely related to B. rhamnosum LMG 19848 T (98.5%), B. muris C3H-21 T (98.3%), B. nesterenkovii DSM 9573 T (98.1%), B. sacelli LMG 20345 T (97.9%), B. fresconis LMG 20336 T (97.6%), B. zhongshanense JB T (97.5%), B. paraconglomeratum LMG 19861 T (97.5%), B. faecium DSM 4810 T (97.4%), B. alimentarium CNRZ 925 T (97.4%), B. phenoliresistens phenol-A T (97.3%), B. conglomeratum IFO 15472 T (97.2%) and B. tyrofermentans CNRZ 926 T (96.9%). Based on neighbour-joining, maximum-parsimony and maximum-likelihood algorithms including all described members of the genus Brachybacterium and Devriesea agamarum IMP2 T as an outgroup, strain M-6-3 T was most closely related to B. rhamnosum DSM 10240 T , B. muris DSM
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Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood.
International journal of systematic and evolutionary microbiology, 2010Co-Authors: Seong-kyu Park, Seong Woon Roh, Min-soo Kim, Mi-ja Jung, Young-do Nam, Eun-jin Park, Jin-woo BaeAbstract:A Gram-positive bacterium, strain M-6-3(T), was isolated from salt-fermented seafood in Korea. The organism grew in 0-10 % (w/v) NaCl and at 25-37 °C, with optimal growth occurring in 5 % NaCl and at 28-30 °C. The peptidoglycan type was variation A4γ with meso-diaminopimelic acid as the diagnostic cell-wall diamino acid. The polar lipid profile of strain M-6-3(T) consisted of diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid and an unknown glycolipid. Strain M-6-3(T) contained MK-7 as the major component of the quinone system and anteiso-C(15 : 0) (62.1 %) as the predominant fatty acid. Based on 16S rRNA gene sequence similarity studies, strain M-6-3(T) was most closely related to Brachybacterium rhamnosum LMG 19848(T) (98.5 %). The G+C content of the genomic DNA was 71.5 mol% and the mean DNA-DNA hybridization value with reference strains was 14.32 ± 2.0 %. Based on phenotypic, genotypic and phylogenetic analyses, it is proposed that strain M-6-3(T) represents a novel species for which the name Brachybacterium squillarum sp. nov. is proposed; the type strain is M-6-3(T) ( = KACC 14221(T) = JCM 16464(T)).
Seong-kyu Park - One of the best experts on this subject based on the ideXlab platform.
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Genome Sequence of Brachybacterium squillarum M-6-3T, Isolated from Salt-Fermented Seafood
Journal of bacteriology, 2011Co-Authors: Seong-kyu Park, Seong Woon Roh, Tae Woong Whon, Jin-woo BaeAbstract:Brachybacterium squillarum M-6-3T was isolated from salt-fermented seafood in Korea and belongs to the Dermabacteraceae, a rather isolated family within the actinobacterial suborder Micrococcineae. Here, we present the draft genome sequence of the type strain Brachybacterium squillarum M-6-3T (3,191,479 bp), a Gram-positive bacterium with high (72.8%) G+C content.
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Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood.
International Journal of Systematic and Evolutionary Microbiology, 2011Co-Authors: Seong-kyu Park, Seong Woon Roh, Min-soo Kim, Mi-ja Jung, Young-do Nam, Eun-jin Park, Jin-woo BaeAbstract:members of the genus Brachybacterium and closely related to B. rhamnosum LMG 19848 T (98.5%), B. muris C3H-21 T (98.3%), B. nesterenkovii DSM 9573 T (98.1%), B. sacelli LMG 20345 T (97.9%), B. fresconis LMG 20336 T (97.6%), B. zhongshanense JB T (97.5%), B. paraconglomeratum LMG 19861 T (97.5%), B. faecium DSM 4810 T (97.4%), B. alimentarium CNRZ 925 T (97.4%), B. phenoliresistens phenol-A T (97.3%), B. conglomeratum IFO 15472 T (97.2%) and B. tyrofermentans CNRZ 926 T (96.9%). Based on neighbour-joining, maximum-parsimony and maximum-likelihood algorithms including all described members of the genus Brachybacterium and Devriesea agamarum IMP2 T as an outgroup, strain M-6-3 T was most closely related to B. rhamnosum DSM 10240 T , B. muris DSM
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Brachybacterium squillarum sp. nov., isolated from salt-fermented seafood.
International journal of systematic and evolutionary microbiology, 2010Co-Authors: Seong-kyu Park, Seong Woon Roh, Min-soo Kim, Mi-ja Jung, Young-do Nam, Eun-jin Park, Jin-woo BaeAbstract:A Gram-positive bacterium, strain M-6-3(T), was isolated from salt-fermented seafood in Korea. The organism grew in 0-10 % (w/v) NaCl and at 25-37 °C, with optimal growth occurring in 5 % NaCl and at 28-30 °C. The peptidoglycan type was variation A4γ with meso-diaminopimelic acid as the diagnostic cell-wall diamino acid. The polar lipid profile of strain M-6-3(T) consisted of diphosphatidylglycerol, phosphatidylglycerol, an unidentified phospholipid and an unknown glycolipid. Strain M-6-3(T) contained MK-7 as the major component of the quinone system and anteiso-C(15 : 0) (62.1 %) as the predominant fatty acid. Based on 16S rRNA gene sequence similarity studies, strain M-6-3(T) was most closely related to Brachybacterium rhamnosum LMG 19848(T) (98.5 %). The G+C content of the genomic DNA was 71.5 mol% and the mean DNA-DNA hybridization value with reference strains was 14.32 ± 2.0 %. Based on phenotypic, genotypic and phylogenetic analyses, it is proposed that strain M-6-3(T) represents a novel species for which the name Brachybacterium squillarum sp. nov. is proposed; the type strain is M-6-3(T) ( = KACC 14221(T) = JCM 16464(T)).
Alla Lapidus - One of the best experts on this subject based on the ideXlab platform.
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Standards in Genomic Sciences (2009) 1:3-11 DOI:10.4056/sigs.492 Complete genome sequence of Brachybacterium faecium
2013Co-Authors: Type Strain T, Alla Lapidus, Rüdiger Pukall, Kurt Labuttii, Feng Chen, Susan Lucas, Alex Copel, Tijana Glavina, Del Rio, Hope TiceAbstract:Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae, a rather isolated family within the actinobacterial suborder Micrococcineae. B. faecium is known for its rod-coccus growth cycle and the ability to degrade uric acid. It grows aerobically or weakly anaerobically. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from poultry deep litter. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the actinobacterial family Dermabacteraceae, and the 3,614,992 bp long single replicon genome with its 3129 protein-coding and 69 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project
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Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10 T )
Standards in genomic sciences, 2009Co-Authors: Alla Lapidus, Rüdiger Pukall, Kurt Labuttii, Alex Copeland, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Tijana Glavina Del Rio, Jan-fang ChengAbstract:Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae, a rather isolated family within the actinobacterial suborder Micrococcineae. B. faecium is known for its rod-coccus growth cycle and the ability to degrade uric acid. It grows aerobically or weakly anaerobically. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from poultry deep litter. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the actinobacterial family Dermabacteraceae, and the 3,614,992 bp long single replicon genome with its 3129 protein-coding and 69 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
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Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6–10^T)
Standards in Genomic Sciences, 2009Co-Authors: Alla Lapidus, Rüdiger Pukall, Kurt Labuttii, Alex Copeland, Tijana Glavina Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-fang ChengAbstract:Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae , a rather isolated family within the actinobacterial suborder Micrococcineae . B. faecium is known for its rod-coccus growth cycle and the ability to degrade uric acid. It grows aerobically or weakly anaerobically. The strain described in this report is a free-living, nonmotile, Gram-positive bacterium, originally isolated from poultry deep litter. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the actinobacterial family Dermabacteraceae , and the 3,614,992 bp long single replicon genome with its 3129 protein-coding and 69 RNA genes is part of the G enomic E ncyclopedia of B acteria and A rchaea project.
Andrea Cherkouk - One of the best experts on this subject based on the ideXlab platform.
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Comparative analysis of uranium bioassociation with halophilic bacteria and archaea.
PloS one, 2018Co-Authors: Miriam Bader, Katharina Müller, Harald Foerstendorf, Matthias Schmidt, Karen Simmons, Juliet S. Swanson, Donald T. Reed, Thorsten Stumpf, Andrea CherkoukAbstract:Rock salt represents a potential host rock formation for the final disposal of radioactive waste. The interactions between indigenous microorganisms and radionuclides, e.g. uranium, need to be investigated to better predict the influence of microorganisms on the safety assessment of the repository. Hence, the association process of uranium with two microorganisms isolated from rock salt was comparatively studied. Brachybacterium sp. G1, which was isolated from the German salt dome Gorleben, and Halobacterium noricense DSM15987T, were selected as examples of a moderately halophilic bacterium and an extremely halophilic archaeon, respectively. The microorganisms exhibited completely different association behaviors with uranium. While a pure biosorption process took place with Brachybacterium sp. G1 cells, a multistage association process occurred with the archaeon. In addition to batch experiments, in situ attenuated total reflection Fourier-transform infrared spectroscopy was applied to characterize the U(VI) interaction process. Biosorption was identified as the dominating process for Brachybacterium sp. G1 with this method. Carboxylic functionalities are the dominant interacting groups for the bacterium, whereas phosphoryl groups are also involved in U(VI) association by the archaeon H. noricense.
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Tentative assignment of infrared bands observed in difference spectra of in situ ATR FT-IR with H. noricense DSM15987T ([U(VI)] = 40 μM, [NaCl] = 3 M, pCH+ 6) [11] and Brachybacterium sp. G1 ([U(VI) = 40 μM, [NaCl] = 1.7 M, pCH+ 6).
2018Co-Authors: Miriam Bader, Katharina Müller, Harald Foerstendorf, Matthias Schmidt, Karen Simmons, Juliet S. Swanson, Donald T. Reed, Thorsten Stumpf, Andrea CherkoukAbstract:Tentative assignment of infrared bands observed in difference spectra of in situ ATR FT-IR with H. noricense DSM15987T ([U(VI)] = 40 μM, [NaCl] = 3 M, pCH+ 6) [11] and Brachybacterium sp. G1 ([U(VI) = 40 μM, [NaCl] = 1.7 M, pCH+ 6).
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Comparative analysis of uranium bioassociation with halophilic bacteria and archaea - Fig 4
2018Co-Authors: Miriam Bader, Katharina Müller, Harald Foerstendorf, Matthias Schmidt, Karen Simmons, Juliet S. Swanson, Donald T. Reed, Thorsten Stumpf, Andrea CherkoukAbstract:Bioassociation studies with Brachybacterium sp. G1 and uranium (pCH+ 6, 1.7 M NaCl). a) Time-dependent association with different dry biomass and uranium concentrations, b) comparison to H. noricense (3 M NaCl, 0.5 mg/mL DBM) [11] at 40 μM, c) dry biomass dependent study [U(VI)] = 20 μM).
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Comparative analysis of uranium bioassociation with halophilic bacteria and archaea - Fig 5
2018Co-Authors: Miriam Bader, Katharina Müller, Harald Foerstendorf, Matthias Schmidt, Karen Simmons, Juliet S. Swanson, Donald T. Reed, Thorsten Stumpf, Andrea CherkoukAbstract:Micrographs of Brachybacterium sp. G1 incubated with and without uranium (20 μM U, pCH+ 6, 1.7 M NaCl) a) Fluorescence microscopy images of live/dead stained cells (green fluorescence–alive, red fluorescence– dead), b) Electron microscopy images (secondary electrons), c) Mapping of organic elements (orange, C, N, O) and uranium (blue). Scale bar on SEM images is 5 μm. SEM images are enlarged in SI (S2 Fig).
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Comparative analysis of uranium bioassociation with halophilic bacteria and archaea - Fig 6
2018Co-Authors: Miriam Bader, Katharina Müller, Harald Foerstendorf, Matthias Schmidt, Karen Simmons, Juliet S. Swanson, Donald T. Reed, Thorsten Stumpf, Andrea CherkoukAbstract:a) In situ ATR FT-IR difference spectra of U(VI) sorption on Brachybacterium sp. G1 cells ([U(VI)] = 40 μM, pCH+ 6, 1.7 M NaCl). The “Equilibration” spectrum confirms a stable bacterial film on the ATR crystal. “U(VI)—sorption” spectra were recorded at different times after induction of U(VI) association. “Flushing” shows the reversibility. b) For comparison the spectrum of U(VI) bioassociation on H. noricense cells after 120 min ([U(VI)] = 40 μM, pCH+ 6, 3 M NaCl) [11].